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Conserved domains on  [gi|134302830|ref|YP_001111377|]
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Nonstructural protein [Rice gall dwarf virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pns11_12 pfam17464
Non-structural protein 11 and 12; This is a domain of unknown function found in Phytoreovirus. ...
 2-204 1.62e-88

Non-structural protein 11 and 12; This is a domain of unknown function found in Phytoreovirus. Family members include the Rice dwarf virus Pns11 and Pns12. Rice dwarf virus (RDV) is an icosahedral, double-layered particle. The viral genome consists of 12 segmented dsRNAs that encode seven structural (P1, P2, P3, P5, P7, P8 and P9) and five non-structural (Pns4, Pns6, Pns10, Pns11 and Pns12) proteins. Pns11 is known to bind nucleic acids and Pns12 is a phosphorylated protein. The non-structural proteins Pns6, Pns11 and Pns12 of RDV are the major constituents of the matrix of viral inclusions in which the assembly of progeny virions and the synthesis of viral RNA are thought to occur.


:

Pssm-ID: 340179  Cd Length: 205  Bit Score: 259.00  E-value: 1.62e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134302830    2 TSNEENPVGVQTLKPNNDAKRVFEM--RKIPSSNVMRVEYTKQSKYRTCVCPSALHFAEECPSNDVLFSVGAHRNMLCVA 79
Cdd:pfam17464   1 MSAEENFVGMQTLAPDKDAKATFEAldRKIPANNVLKVEYMKNAKYRTCICPSALHFADDCPCEDVIFAVGAHRNMACAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134302830   80 KAFDQTKPRGMQRGNRRNNVAKVMTLNELMPKDDSNDRKKAKTSKDRKVEKSSRGRASSSRSRGRGGFSRNGRDRRETDS 159
Cdd:pfam17464  81 KAFDDGKPIGMQRGNLKNKSAKRFDLNEFLPKDDPGDRKKAEAGKDKKTEKASRDRADKSPSKGKGGFKKGGKDRREEDK 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 134302830  160 QDEYSEDNSYKSEEESTEDETAPLTKKDMLKMMSMFQSGAKSKRR 204
Cdd:pfam17464 161 QDEYSEDNSYKSEEDLSEDEDAPLTKKDMLKMMSMFQNGAKSKRK 205
 
Name Accession Description Interval E-value
Pns11_12 pfam17464
Non-structural protein 11 and 12; This is a domain of unknown function found in Phytoreovirus. ...
 2-204 1.62e-88

Non-structural protein 11 and 12; This is a domain of unknown function found in Phytoreovirus. Family members include the Rice dwarf virus Pns11 and Pns12. Rice dwarf virus (RDV) is an icosahedral, double-layered particle. The viral genome consists of 12 segmented dsRNAs that encode seven structural (P1, P2, P3, P5, P7, P8 and P9) and five non-structural (Pns4, Pns6, Pns10, Pns11 and Pns12) proteins. Pns11 is known to bind nucleic acids and Pns12 is a phosphorylated protein. The non-structural proteins Pns6, Pns11 and Pns12 of RDV are the major constituents of the matrix of viral inclusions in which the assembly of progeny virions and the synthesis of viral RNA are thought to occur.


Pssm-ID: 340179  Cd Length: 205  Bit Score: 259.00  E-value: 1.62e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134302830    2 TSNEENPVGVQTLKPNNDAKRVFEM--RKIPSSNVMRVEYTKQSKYRTCVCPSALHFAEECPSNDVLFSVGAHRNMLCVA 79
Cdd:pfam17464   1 MSAEENFVGMQTLAPDKDAKATFEAldRKIPANNVLKVEYMKNAKYRTCICPSALHFADDCPCEDVIFAVGAHRNMACAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134302830   80 KAFDQTKPRGMQRGNRRNNVAKVMTLNELMPKDDSNDRKKAKTSKDRKVEKSSRGRASSSRSRGRGGFSRNGRDRRETDS 159
Cdd:pfam17464  81 KAFDDGKPIGMQRGNLKNKSAKRFDLNEFLPKDDPGDRKKAEAGKDKKTEKASRDRADKSPSKGKGGFKKGGKDRREEDK 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 134302830  160 QDEYSEDNSYKSEEESTEDETAPLTKKDMLKMMSMFQSGAKSKRR 204
Cdd:pfam17464 161 QDEYSEDNSYKSEEDLSEDEDAPLTKKDMLKMMSMFQNGAKSKRK 205
 
Name Accession Description Interval E-value
Pns11_12 pfam17464
Non-structural protein 11 and 12; This is a domain of unknown function found in Phytoreovirus. ...
 2-204 1.62e-88

Non-structural protein 11 and 12; This is a domain of unknown function found in Phytoreovirus. Family members include the Rice dwarf virus Pns11 and Pns12. Rice dwarf virus (RDV) is an icosahedral, double-layered particle. The viral genome consists of 12 segmented dsRNAs that encode seven structural (P1, P2, P3, P5, P7, P8 and P9) and five non-structural (Pns4, Pns6, Pns10, Pns11 and Pns12) proteins. Pns11 is known to bind nucleic acids and Pns12 is a phosphorylated protein. The non-structural proteins Pns6, Pns11 and Pns12 of RDV are the major constituents of the matrix of viral inclusions in which the assembly of progeny virions and the synthesis of viral RNA are thought to occur.


Pssm-ID: 340179  Cd Length: 205  Bit Score: 259.00  E-value: 1.62e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134302830    2 TSNEENPVGVQTLKPNNDAKRVFEM--RKIPSSNVMRVEYTKQSKYRTCVCPSALHFAEECPSNDVLFSVGAHRNMLCVA 79
Cdd:pfam17464   1 MSAEENFVGMQTLAPDKDAKATFEAldRKIPANNVLKVEYMKNAKYRTCICPSALHFADDCPCEDVIFAVGAHRNMACAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134302830   80 KAFDQTKPRGMQRGNRRNNVAKVMTLNELMPKDDSNDRKKAKTSKDRKVEKSSRGRASSSRSRGRGGFSRNGRDRRETDS 159
Cdd:pfam17464  81 KAFDDGKPIGMQRGNLKNKSAKRFDLNEFLPKDDPGDRKKAEAGKDKKTEKASRDRADKSPSKGKGGFKKGGKDRREEDK 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 134302830  160 QDEYSEDNSYKSEEESTEDETAPLTKKDMLKMMSMFQSGAKSKRR 204
Cdd:pfam17464 161 QDEYSEDNSYKSEEDLSEDEDAPLTKKDMLKMMSMFQNGAKSKRK 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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