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Conserved domains on  [gi|1338958651|gb|AUX92493|]
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allantoinase PuuE [Mixta gaviniae]

Protein Classification

allantoinase PuuE( domain architecture ID 11496495)

allantoinase PuuE can hydrolyze allantoin ((2,5-dioxoimidazolidin-4-yl)urea), one of the most important nitrogen carrier for some plants, soil animals, and microorganisms, to allantoate

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
uraD_N-term-dom TIGR03212
putative urate catabolism protein; This model represents a protein that is predominantly found ...
16-316 0e+00

putative urate catabolism protein; This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.


:

Pssm-ID: 211797  Cd Length: 297  Bit Score: 558.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  16 YPRDLRGYAGKPPHAAWPGEARIAVQFVLNYEEGAENNVLHGDAGSEQFLSDIIGAASYP-DRHMSMDSLYEYGSRAGFW 94
Cdd:TIGR03212   1 YPRDLIGYGRNPPDARWPGGARIAVQFVLNYEEGGENCVLHGDAASEAFLSEIVGAAPWPgQRHMSMESLYEYGSRAGFW 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  95 RIHNEFQKRGLPLTVFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPTGWY 174
Cdd:TIGR03212  81 RLLRLFTERGLPLTVFGVAMALARNPEAVAAMKEAGWEIASHGLRWIDYQDMDEAQEREHIAEAIRLHTEVTGERPLGWY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 175 TGRDSPNTRRLVVEQGGFSYDSDYYGDDLPFWtqvtcQDGTVRPHLIIPYTLETNDMRFATPQGFNTAEQFYTYLKDSFD 254
Cdd:TIGR03212 161 TGRTSPNTRRLVAEEGGFLYDSDSYADDLPYW-----DDGAGRPQLIVPYTLDANDMRFATPQGFNTGEQFFTYLKDAFD 235
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1338958651 255 VLYEEGESAPKMLSVGMHCRLLGRPGRFRALTRFLDYIQQHEKVWICTRQQIADHWIKHHPA 316
Cdd:TIGR03212 236 VLYAEGEGAPKMMSIGLHCRLVGRPGRIAALQRFLDYVQSHDKVWVARRIDIARHWHATHPY 297
 
Name Accession Description Interval E-value
uraD_N-term-dom TIGR03212
putative urate catabolism protein; This model represents a protein that is predominantly found ...
16-316 0e+00

putative urate catabolism protein; This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.


Pssm-ID: 211797  Cd Length: 297  Bit Score: 558.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  16 YPRDLRGYAGKPPHAAWPGEARIAVQFVLNYEEGAENNVLHGDAGSEQFLSDIIGAASYP-DRHMSMDSLYEYGSRAGFW 94
Cdd:TIGR03212   1 YPRDLIGYGRNPPDARWPGGARIAVQFVLNYEEGGENCVLHGDAASEAFLSEIVGAAPWPgQRHMSMESLYEYGSRAGFW 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  95 RIHNEFQKRGLPLTVFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPTGWY 174
Cdd:TIGR03212  81 RLLRLFTERGLPLTVFGVAMALARNPEAVAAMKEAGWEIASHGLRWIDYQDMDEAQEREHIAEAIRLHTEVTGERPLGWY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 175 TGRDSPNTRRLVVEQGGFSYDSDYYGDDLPFWtqvtcQDGTVRPHLIIPYTLETNDMRFATPQGFNTAEQFYTYLKDSFD 254
Cdd:TIGR03212 161 TGRTSPNTRRLVAEEGGFLYDSDSYADDLPYW-----DDGAGRPQLIVPYTLDANDMRFATPQGFNTGEQFFTYLKDAFD 235
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1338958651 255 VLYEEGESAPKMLSVGMHCRLLGRPGRFRALTRFLDYIQQHEKVWICTRQQIADHWIKHHPA 316
Cdd:TIGR03212 236 VLYAEGEGAPKMMSIGLHCRLVGRPGRIAALQRFLDYVQSHDKVWVARRIDIARHWHATHPY 297
CE4_PuuE_SpCDA1 cd10977
Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase ...
32-309 1.95e-173

Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and similar proteins; Allantoinase (EC 3.5.2.5) can hydrolyze allantoin((2,5-dioxoimidazolidin-4-yl)urea), one of the most important nitrogen carrier for some plants, soil animals, and microorganisms, to allantoate. DAL1 gene from Saccharomyces cerevisiae encodes an allantoinase. However, some organisms possess allantoinase activity but lack DAL1 allantoinase. In those organisms, a defective allantoinase gene, named puuE (purine utilization E), encodes an allantoinase that specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. PuuE allantoinase is related to polysaccharide deacetylase (DCA), one member of the carbohydrate esterase 4 (CE4) superfamily, that removes N-linked or O-linked acetyl groups of cell wall polysaccharides, and lacks sequence similarity with the known DAL1 allantoinase that belongs to the amidohydrolase superfamily. PuuE allantoinase functions as a homotetramer. Its monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCAs. It appears to be metal-independent and acts on a small substrate molecule, which is distinct from the common features of DCAs that are normally metal ion dependent and recognize multimeric substrates. This family also includes a chitin deacetylase 1 (SpCDA1) encoded by the Schizosaccharomyces pombe cda1 gene. Although the general function of chitin deacetylase (CDA) is the synthesis of chitosan from chitin, a polymer of N-acetyl glucosamine, to build up the proper ascospore wall, the actual function of SpCDA1 might involve allantoin hydrolysis. It is likely orthologous to PuuE allantoinase, whereas it is more distantly related to the CDAs found in other fungi, such as Saccharomyces cerevisiae and Mucor rouxii. Those CDAs are similar with rizobial NodB protein and are not included in this family.


Pssm-ID: 200599 [Multi-domain]  Cd Length: 273  Bit Score: 481.44  E-value: 1.95e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  32 WPGEARIAVQFVLNYEEGAENNVLHGDAGSEQFLSDIIGAASYPDRHMSMDSLYEYGSRAGFWRIHNEFQKRGLPLTVFG 111
Cdd:cd10977     1 WPGGARVAVSFVLNYEEGGERSILHGDGASESFLSEIVGAPLPGVRDLSMESLYEYGSRAGVWRILRLFDRRDVPLTVFA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 112 VAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPTGWYTGRDSPNTRRLVVEQGG 191
Cdd:cd10977    81 VAMALERNPAVARAMVAAGHEIASHGWRWIDYQGMDEAEEREHIRRAIAIIERLTGERPLGWYTGRASPNTRRLVVEEGG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 192 FSYDSDYYGDDLPFWTqvtcqDGTVRPHLIIPYTLETNDMRFATPQGFNTAEQFYTYLKDSFDVLYEEGESAPKMLSVGM 271
Cdd:cd10977   161 FLYDSDSYDDDLPYWV-----DVEGKPHLVVPYTLDTNDMRFATAQGFNTADDFFTYLKDAFDVLYEEGAEAPKMMSIGL 235
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1338958651 272 HCRLLGRPGRFRALTRFLDYIQQHEKVWICTRQQIADH 309
Cdd:cd10977   236 HCRLIGRPGRFAGLERFLEHVKSHDGVWVARREDIARH 273
CDA1 COG0726
Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family [Carbohydrate transport and ...
87-227 2.41e-27

Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family [Carbohydrate transport and metabolism, Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440490 [Multi-domain]  Cd Length: 195  Bit Score: 105.51  E-value: 2.41e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  87 YGSRAGFWRIHNEFQKRGLPLTVFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLF 166
Cdd:COG0726    28 DGPREGTPRLLDLLKKYGVKATFFVVGSAVERHPELVREIAAAGHEIGNHTYTHPDLTKLSEEEERAEIARAKEALEELT 107
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1338958651 167 GKAPTGWYT--GRDSPNTRRLVVEQgGFSY--DSDYYGDDLPFWTQVTCQD---GTVRPHLIIPYTLE 227
Cdd:COG0726   108 GKRPRGFRPpyGRYSPETLDLLAEL-GYRYilWDSVDSDDWPYPSADAIVDrvlKYLKPGSIRPGTVE 174
Polysacc_deac_1 pfam01522
Polysaccharide deacetylase; This domain is found in polysaccharide deacetylase. This family of ...
85-194 1.05e-11

Polysaccharide deacetylase; This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan.


Pssm-ID: 426305 [Multi-domain]  Cd Length: 124  Bit Score: 61.09  E-value: 1.05e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  85 YEYGSRAGFWRIHNEFQKRGLPLTVFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMD 164
Cdd:pfam01522  13 FDDGPSENTPAILDVLKKYGVKATFFVIGGNVERYPDLVKRMVEAGHEIGNHTWSHPNLTGLSPEEIRKEIERAQDALEK 92
                          90       100       110
                  ....*....|....*....|....*....|.
gi 1338958651 165 LFGKAPTGW-YTGRDSPNTRRLVVEQGGFSY 194
Cdd:pfam01522  93 ATGKRPRLFrPPYGSYNDTVLEVAKKLGYTA 123
 
Name Accession Description Interval E-value
uraD_N-term-dom TIGR03212
putative urate catabolism protein; This model represents a protein that is predominantly found ...
16-316 0e+00

putative urate catabolism protein; This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.


Pssm-ID: 211797  Cd Length: 297  Bit Score: 558.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  16 YPRDLRGYAGKPPHAAWPGEARIAVQFVLNYEEGAENNVLHGDAGSEQFLSDIIGAASYP-DRHMSMDSLYEYGSRAGFW 94
Cdd:TIGR03212   1 YPRDLIGYGRNPPDARWPGGARIAVQFVLNYEEGGENCVLHGDAASEAFLSEIVGAAPWPgQRHMSMESLYEYGSRAGFW 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  95 RIHNEFQKRGLPLTVFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPTGWY 174
Cdd:TIGR03212  81 RLLRLFTERGLPLTVFGVAMALARNPEAVAAMKEAGWEIASHGLRWIDYQDMDEAQEREHIAEAIRLHTEVTGERPLGWY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 175 TGRDSPNTRRLVVEQGGFSYDSDYYGDDLPFWtqvtcQDGTVRPHLIIPYTLETNDMRFATPQGFNTAEQFYTYLKDSFD 254
Cdd:TIGR03212 161 TGRTSPNTRRLVAEEGGFLYDSDSYADDLPYW-----DDGAGRPQLIVPYTLDANDMRFATPQGFNTGEQFFTYLKDAFD 235
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1338958651 255 VLYEEGESAPKMLSVGMHCRLLGRPGRFRALTRFLDYIQQHEKVWICTRQQIADHWIKHHPA 316
Cdd:TIGR03212 236 VLYAEGEGAPKMMSIGLHCRLVGRPGRIAALQRFLDYVQSHDKVWVARRIDIARHWHATHPY 297
CE4_PuuE_SpCDA1 cd10977
Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase ...
32-309 1.95e-173

Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and similar proteins; Allantoinase (EC 3.5.2.5) can hydrolyze allantoin((2,5-dioxoimidazolidin-4-yl)urea), one of the most important nitrogen carrier for some plants, soil animals, and microorganisms, to allantoate. DAL1 gene from Saccharomyces cerevisiae encodes an allantoinase. However, some organisms possess allantoinase activity but lack DAL1 allantoinase. In those organisms, a defective allantoinase gene, named puuE (purine utilization E), encodes an allantoinase that specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. PuuE allantoinase is related to polysaccharide deacetylase (DCA), one member of the carbohydrate esterase 4 (CE4) superfamily, that removes N-linked or O-linked acetyl groups of cell wall polysaccharides, and lacks sequence similarity with the known DAL1 allantoinase that belongs to the amidohydrolase superfamily. PuuE allantoinase functions as a homotetramer. Its monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCAs. It appears to be metal-independent and acts on a small substrate molecule, which is distinct from the common features of DCAs that are normally metal ion dependent and recognize multimeric substrates. This family also includes a chitin deacetylase 1 (SpCDA1) encoded by the Schizosaccharomyces pombe cda1 gene. Although the general function of chitin deacetylase (CDA) is the synthesis of chitosan from chitin, a polymer of N-acetyl glucosamine, to build up the proper ascospore wall, the actual function of SpCDA1 might involve allantoin hydrolysis. It is likely orthologous to PuuE allantoinase, whereas it is more distantly related to the CDAs found in other fungi, such as Saccharomyces cerevisiae and Mucor rouxii. Those CDAs are similar with rizobial NodB protein and are not included in this family.


Pssm-ID: 200599 [Multi-domain]  Cd Length: 273  Bit Score: 481.44  E-value: 1.95e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  32 WPGEARIAVQFVLNYEEGAENNVLHGDAGSEQFLSDIIGAASYPDRHMSMDSLYEYGSRAGFWRIHNEFQKRGLPLTVFG 111
Cdd:cd10977     1 WPGGARVAVSFVLNYEEGGERSILHGDGASESFLSEIVGAPLPGVRDLSMESLYEYGSRAGVWRILRLFDRRDVPLTVFA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 112 VAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPTGWYTGRDSPNTRRLVVEQGG 191
Cdd:cd10977    81 VAMALERNPAVARAMVAAGHEIASHGWRWIDYQGMDEAEEREHIRRAIAIIERLTGERPLGWYTGRASPNTRRLVVEEGG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 192 FSYDSDYYGDDLPFWTqvtcqDGTVRPHLIIPYTLETNDMRFATPQGFNTAEQFYTYLKDSFDVLYEEGESAPKMLSVGM 271
Cdd:cd10977   161 FLYDSDSYDDDLPYWV-----DVEGKPHLVVPYTLDTNDMRFATAQGFNTADDFFTYLKDAFDVLYEEGAEAPKMMSIGL 235
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1338958651 272 HCRLLGRPGRFRALTRFLDYIQQHEKVWICTRQQIADH 309
Cdd:cd10977   236 HCRLIGRPGRFAGLERFLEHVKSHDGVWVARREDIARH 273
CE4_SpCDA1 cd10980
Putative catalytic domain of Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and ...
32-315 8.55e-111

Putative catalytic domain of Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and similar proteins; This family is represented by Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), encoded by the cda1 gene. The general function of chitin deacetylase (CDA) is the synthesis of chitosan from chitin, a polymer of N-acetyl glucosamine, to build up the proper ascospore wall. The actual function of SpCDA1 might be involved in allantoin hydrolysis. It is likely an ortholog to bacterial PuuE allantoinase, whereas it is more distantly related to the CDAs found in other fungi, such as Saccharomyces cerevisiae and Mucor rouxii. Those CDAs are similar with rizobial NodB protein and are not included in this family.


Pssm-ID: 200602 [Multi-domain]  Cd Length: 297  Bit Score: 323.73  E-value: 8.55e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  32 WPGEARIAVQFVLNYEEGAENNVLHGDAGSEQFLSDIiGAASYP---DRHMSMDSLYEYGSRAGFWRIHNEFQKRGLPLT 108
Cdd:cd10980     1 WPNNAKIAVSFVLNYEEGSERSPLNGDEITETFLTEL-GPGPFPnrgVRDVSIESLYEYGSRCGFWRILRLFKKHGVKFT 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 109 VFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDL--FGKAPTGWYTGRDSPNTRRLV 186
Cdd:cd10980    80 CFAVGQALEKNPAVAGAMEEGGHEVASHGWRWIDYSGWPVEEEYENIKKAVQAIKKTtpSGRAPRGWYYGRASLRSRSLV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 187 V----EQG-GFSYDSDYYGDDLPFWTQVTCQDGTVRPH--LIIPYTLETNDMRFATPQGFNTAEQFYTYLKDSFDVLYEE 259
Cdd:cd10980   160 AqvykELGlPLLWYSDAYNDDLPYWVPYPGGSKPEDDKglLIVPYTLDTNDYKNAGYQGFINSDDFYTYLRDAFDVLYEE 239
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1338958651 260 G-ESAPKMLSVGMHCRLLGRPGRFRALTRFLDYIQQHEKVWICTRQQIADHWIKHHP 315
Cdd:cd10980   240 GlEGAPKMMTIGLHCRITGRPGRFAGLRKFMEYITSKEGVWVATREEIAQAWSEKFP 296
CE4_PuuE_HpPgdA_like cd10916
Catalytic domain of bacterial PuuE allantoinases, Helicobacter pylori peptidoglycan ...
39-309 2.00e-69

Catalytic domain of bacterial PuuE allantoinases, Helicobacter pylori peptidoglycan deacetylase (HpPgdA), and similar proteins; This family is a member of the very large and functionally diverse carbohydrate esterase 4 (CE4) superfamily. It contains bacterial PuuE (purine utilization E) allantoinases, a peptidoglycan deacetylase from Helicobacter pylori (HpPgdA), Escherichia coli ArnD, and many uncharacterized homologs from all three kingdoms of life. PuuE allantoinase appears to be metal-independent and specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. Different from PuuE allantoinase, HpPgdA has the ability to bind a metal ion at the active site and is responsible for a peptidoglycan modification that counteracts the host immune response. Both PuuE allantoinase and HpPgdA function as a homotetramer. The monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of polysaccharide deacetylase (DCA)-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. However, in contrast with the typical DCAs, PuuE allantoinase and HpPgdA might not exhibit a solvent-accessible polysaccharide binding groove and only recognize a small substrate molecule. ArnD catalyzes the deformylation of 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol.


Pssm-ID: 213021 [Multi-domain]  Cd Length: 247  Bit Score: 216.41  E-value: 2.00e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  39 AVQFVLNYEEGAENNVLHGDAGSeqflsdiigaasypdrhMSMDSLYEYGSRAGFWRIHNEFQKRGLPLTVFGVAMALAR 118
Cdd:cd10916     1 AVSVTVDVEGWAGGAASHGAPMA-----------------PAAYSWGRYGLRVGIPRLLDLLDRHGVRATFFVPGRVAER 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 119 HPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPTGWYTGR--DSPNTRRLVVEQgGFSYDS 196
Cdd:cd10916    64 FPDAVRAIVAAGHEIAAHGYAHEDVLALSREQEREVLLRSLELLEELTGQRPTGWRSPGltFSPDTLELLAEL-GYLYDG 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 197 DYYGDDLPFWTQvtcQDGTVRPHLIIPYTLETNDMRFATPQGFnTAEQFYTYLKDSFDVLYEEGesapKMLSVGMHCRLL 276
Cdd:cd10916   143 DTYDDDLPYYWR---DATGGGPILELPYTTVLNDLRFFMGGGG-LPRAFYENWKEQFDVLYARG----RYLSLTLHPRVI 214
                         250       260       270
                  ....*....|....*....|....*....|...
gi 1338958651 277 GRPGRFRALTRFLDYIQQHEKVWICTRQQIADH 309
Cdd:cd10916   215 GRPARAAALDRFLRYVKSHPDVWFATHDEIARH 247
CE4_PuuE_like cd10979
Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar ...
32-313 1.08e-53

Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases; The family includes a group of uncharacterized prokaryotic polysaccharide deacetylases (DCAs) that show high sequence similarity to the catalytic domain of bacterial PuuE (purine utilization E) allantoinases. PuuE allantoinase specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. It functions as a homotetramer. Its monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCA-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. PuuE allantoinase appears to be metal-independent and acts on a small substrate molecule, which is distinct from the common feature of DCAs which are normally metal ion dependent and recognize multimeric substrates.


Pssm-ID: 200601 [Multi-domain]  Cd Length: 281  Bit Score: 177.05  E-value: 1.08e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  32 WPGEARIAVQFVLNYEEGAEnnvlhgDAGSEQFLSDiiGAASYPD-RHMSmdsLYEYGSRAGFWRIHNEFQKRGLPLTVF 110
Cdd:cd10979    14 WPGGARVAVWVAVNVEHFPL------DPPMPPILPA--PATPYPDvLNYS---WRDYGNRVGIWRLLDALDELGIPPTVA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 111 GVAMALARHPEIVQAISEANYDVVSHGWRWIHYQS-MDAKTERQHIQQAVDVLMDLFGKAPTGWYT-GR-DSPNTRRLVV 187
Cdd:cd10979    83 LNAAVADRYPELIEAIRERGWEFIAHGISNSTLHAgLDEAQEREVIAESLDRIEKATGQRPRGWLSpGLsETENTPDLLA 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 188 EQGgFSYDSDYYGDDLPFWTQvtcqdgTVRPHLI-IPYTLETNDmRFATPQGFNTAEQFYTYLKDSFDVLYEEGESAPKM 266
Cdd:cd10979   163 EAG-IEYLCDWVNDDQPYWLR------TPAGPLLsLPYTLELND-IPIYLVRGHSADEFADRIIDQFDQLYAEGAESGRV 234
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1338958651 267 LSVGMHCRLLGRPGRFRALTRFLDYIQQHEKVWICTRQQIADHWIKH 313
Cdd:cd10979   235 MAIALHPYIVGQPHRIRALEEALEYIAAHPDVWFATGGEIADWFLAQ 281
CE4_Sll1306_like cd10978
Putative catalytic domain of Synechocystis sp. Sll1306 protein and other bacterial homologs; ...
32-307 4.22e-50

Putative catalytic domain of Synechocystis sp. Sll1306 protein and other bacterial homologs; The family contains Synechocystis sp. Sll1306 protein and uncharacterized bacterial polysaccharide deacetylases. Although their biological function remains unknown, they show very high sequence homology to the catalytic domain of bacterial PuuE (purine utilization E) allantoinases. PuuE allantoinase specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. It functions as a homotetramer. Its monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of polysaccharide deacetylase-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. PuuE allantoinase appears to be metal-independent and acts on a small substrate molecule, which is distinct from the common feature of polysaccharide deacetylases that are normally metal ion dependent and recognize multimeric substrates.


Pssm-ID: 200600 [Multi-domain]  Cd Length: 271  Bit Score: 167.63  E-value: 4.22e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  32 WPGEARIAVQFVLNYEEGAENNVLHGDAGSEQFLSDiigaasYPDrhMSMDSLYEYGSRAGFWRIHNEFQKRGLPLTVFG 111
Cdd:cd10978     2 WPNGARLVISISMQFEAGGQPIKGEGPFPPEDPPKG------YPD--LPTNTWYQYGYKEGIPRMLDLWDKHGIKVTSHM 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 112 VAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPTGW--YTGRDSPNTRRLVVEQ 189
Cdd:cd10978    74 VGRAVEKHPDLAKEIVQRGHEAAAHGRDWQNQFSMSREQERAFIQDGVDSIQKVTGQRPVGYnaFWLRGSPNTLDILQEL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 190 GgFSYDSDYYGDDLPFWTQVTCQDGTVrphliIPYTLETNDMRFATPQGFnTAEQFYTYLKDSFDVLYEEGESAPKMLSV 269
Cdd:cd10978   154 G-FVYHIDDVSRDEPFIIPVNGKDFVV-----VPYTLRNNDIVRFEGRAY-SSDAYLQELKDEFDQLYEEAAHRRRMMSI 226
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1338958651 270 GMHCRLLGRPGRFRALTRFLDYIQQHEKVWICTRQQIA 307
Cdd:cd10978   227 SLHDRISGTPQRVRVLDEFLTYAKSHPGVTFMRKDDIA 264
CE4_HpPgdA_like cd10938
Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar ...
50-310 7.26e-36

Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins; This family is represented by a peptidoglycan deacetylase (HP0310, HpPgdA) from the gram-negative pathogen Helicobacter pylori. HpPgdA has the ability to bind a metal ion at the active site and is responsible for a peptidoglycan modification that counteracts the host immune response. It functions as a homotetramer. The monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of polysaccharide deacetylase (DCA)-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. In contrast to typical NodB-like DCAs, HpPgdA does not exhibit a solvent-accessible polysaccharide binding groove, suggesting that the enzyme binds a small molecule at the active site.


Pssm-ID: 200563 [Multi-domain]  Cd Length: 258  Bit Score: 129.98  E-value: 7.26e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  50 AENNVLHGDAGSEQFLSDIigaasypdrhmsmdSLYEYGSRAGFWRIHNEFQKRGLPLTVFGVAMALARHPEIVQAISEA 129
Cdd:cd10938    10 AESGWLGSGGGAADRPTDL--------------SRGEYGARVGVPRLLDLLDRYDVKATFFVPGHTAETFPEAVEAILAA 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 130 NYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPTGWYT--GRDSPNTRRLVVEQGgFSYDSDYYGDDLPFWT 207
Cdd:cd10938    76 GHEIGHHGYLHENPTGLTPEEERELLERGLELLEKLTGKRPVGYRSpsWEFSPNTLDLLLEHG-FLYDSSLMGDDRPYYY 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 208 QvtcQDGTVRPHLIIPYTLETND---MRF----ATPQGFNTAEQFYTYLKDSFDVLYEEGesapKMLSVGMHCRLLGRPG 280
Cdd:cd10938   155 V---RRGEETGLVEIPVHWELDDfpyFAFnrspPGPPGIAPPRDVLDNWKDEFDGAYEEG----GVFTLTLHPQVIGRPS 227
                         250       260       270
                  ....*....|....*....|....*....|
gi 1338958651 281 RFRALTRFLDYIQQHEKVWICTRQQIADHW 310
Cdd:cd10938   228 RIAMLERLIEHIKAHGGVWFATGEEIADYW 257
CDA1 COG0726
Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family [Carbohydrate transport and ...
87-227 2.41e-27

Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family [Carbohydrate transport and metabolism, Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440490 [Multi-domain]  Cd Length: 195  Bit Score: 105.51  E-value: 2.41e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  87 YGSRAGFWRIHNEFQKRGLPLTVFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLF 166
Cdd:COG0726    28 DGPREGTPRLLDLLKKYGVKATFFVVGSAVERHPELVREIAAAGHEIGNHTYTHPDLTKLSEEEERAEIARAKEALEELT 107
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1338958651 167 GKAPTGWYT--GRDSPNTRRLVVEQgGFSY--DSDYYGDDLPFWTQVTCQD---GTVRPHLIIPYTLE 227
Cdd:COG0726   108 GKRPRGFRPpyGRYSPETLDLLAEL-GYRYilWDSVDSDDWPYPSADAIVDrvlKYLKPGSIRPGTVE 174
Polysacc_deac_1 pfam01522
Polysaccharide deacetylase; This domain is found in polysaccharide deacetylase. This family of ...
85-194 1.05e-11

Polysaccharide deacetylase; This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan.


Pssm-ID: 426305 [Multi-domain]  Cd Length: 124  Bit Score: 61.09  E-value: 1.05e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  85 YEYGSRAGFWRIHNEFQKRGLPLTVFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMD 164
Cdd:pfam01522  13 FDDGPSENTPAILDVLKKYGVKATFFVIGGNVERYPDLVKRMVEAGHEIGNHTWSHPNLTGLSPEEIRKEIERAQDALEK 92
                          90       100       110
                  ....*....|....*....|....*....|.
gi 1338958651 165 LFGKAPTGW-YTGRDSPNTRRLVVEQGGFSY 194
Cdd:pfam01522  93 ATGKRPRLFrPPYGSYNDTVLEVAKKLGYTA 123
CE4_ArnD cd10939
Catalytic domain of Escherichia coli 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol ...
118-230 6.58e-08

Catalytic domain of Escherichia coli 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD and other bacterial homologs; This family is represented by Escherichia coli 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD (EC 3.5.1.n3). ArnD plays an important role in the biosynthesis of undecaprenyl phosphate alpha-4-amino-4-deoxy-L-arabinose (alpha-L-Ara4N). It catalyzes the deformylation of 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol. The ArnD-dependent deformylation likely occurs on the inner leaflet of the inner membrane. This family also includes many uncharacterized bacterial polysaccharide deacetylases. All family members show high sequence homology to the catalytic domain of bacterial PuuE (purine utilization E) allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA), and are classified within the larger carbohydrate esterase 4 (CE4) superfamily.


Pssm-ID: 200564 [Multi-domain]  Cd Length: 290  Bit Score: 53.06  E-value: 6.58e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 118 RHPEIVQAISEANYDVVSHGWRWIHYQS----MDAKTERQHIQQAVDVLMDLFGKAPT-----GWYTgrdspNTRRL-VV 187
Cdd:cd10939    87 RLADIIRQVAKAGHEVGIHAWDHVKWQDrldaMSAAEIKREFDKGVALFEKIFGRPPStsaapGWQA-----NDRSLeIK 161
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1338958651 188 EQGGFSYDSDYYGDDlPFWTQVtcqDGTVRPHLIIPYTLETND 230
Cdd:cd10939   162 DEFGFRYASDCRGGH-PFYPLL---AGKPLGTLQIPTTLPTLD 200
CE4_CDA_like cd10919
Putative catalytic domain of chitin deacetylase-like proteins from insects and similar ...
179-312 8.50e-07

Putative catalytic domain of chitin deacetylase-like proteins from insects and similar proteins; Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues. CDAs have been isolated and characterized from various bacterial and fungal species and belong to the larger carbohydrate esterase family 4 (CE4). This family includes many CDA-like proteins, mainly from insects, which contain a putative CDA-like catalytic domain similar to the catalytic NodB homology domain of CE4 esterases. Some family members have an additional chitin binding domain (ChBD), or an additional low-density lipoprotein receptor class A domain (LDLa), or both. Due to the lack of some catalytically relevant residues, several insect CDA-like proteins are devoid of enzymatic activity and may simply bind to chitin and thus influence the mechanical or permeability properties of chitin-containing structures such as the cuticle or the peritrophic membrane. This family also includes many uncharacterized hypothetical proteins from bacteria, exhibiting high sequence similarity to insect CDA-like proteins.


Pssm-ID: 200545 [Multi-domain]  Cd Length: 273  Bit Score: 49.67  E-value: 8.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 179 SPNTRRlVVEQGGFSYDSDYYGDDLPFWTQVT-------------------CQDGTVRP-------HLIIPYTLETNDMR 232
Cdd:cd10919   114 NPNTRE-VLEENGFLYDSSIPEPYTPSGTNRLwpytldygipqdcnlvpgsCSPTERYPglwevplYTLQDGNDTTGDSY 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651 233 FATPQGFN-TAEQFYTYLKDSFDVLYEeGESAPkmLSVGMHCRLL--GRPGRFRALTRFLDYIQQHEKVWICTRQQIADh 309
Cdd:cd10919   193 YCTPDDGPlNGDSFYALLKYNFDRHYN-GNRAP--FGIYLHAAWLspPYSERRAALEKFLDYALSKPDVWFVTNSQLLD- 268

                  ...
gi 1338958651 310 WIK 312
Cdd:cd10919   269 WMQ 271
CE4_PuuE_HpPgdA_like_2 cd10941
Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar ...
85-196 2.87e-06

Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA); This family contains many uncharacterized prokaryotic polysaccharide deacetylases (DCAs) that show high sequence similarity to the catalytic domain of bacterial PuuE allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA). PuuE allantoinase appears to be metal-independent and specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. Different from PuuE allantoinase, HpPgdA has the ability to bind a metal ion at the active site and is responsible for a peptidoglycan modification that counteracts the host immune response. Both PuuE allantoinase and HpPgdA function as homotetramers. The monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCA-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. In contrast to typical NodB-like DCAs, PuuE allantoinase and HpPgdA do not exhibit a solvent-accessible polysaccharide binding groove and might only bind a small molecule at the active site.


Pssm-ID: 200566 [Multi-domain]  Cd Length: 258  Bit Score: 47.67  E-value: 2.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  85 YEYGSRAGFWRIHNEFQKRGLPLTVFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMD 164
Cdd:cd10941    26 QERRLEEGLDRLLDLLDKHGVKATFFVLGEVAERYPDLIRRIAEAGHEIASHGYAHERVDRLTPEEFREDLRRSKKILED 105
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1338958651 165 LFGKAPTGWYTGRDSPNTRRL-VVEQGGFSYDS 196
Cdd:cd10941   106 ITGQKVVGFRAPNFSITPWALdILAEAGYLYDS 138
CE4_SF cd10585
Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily; The carbohydrate ...
87-199 6.01e-06

Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily; The carbohydrate esterase 4 (CE4) superfamily mainly includes chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan, respectively. Members in this superfamily contain a NodB homology domain that adopts a deformed (beta/alpha)8 barrel fold, which encompasses a mononuclear metalloenzyme employing a conserved His-His-Asp zinc-binding triad, closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. The NodB homology domain of CE4 superfamily is remotely related to the 7-stranded beta/alpha barrel catalytic domain of the superfamily consisting of family 38 glycoside hydrolases (GH38), family 57 heat stable retaining glycoside hydrolases (GH57), lactam utilization protein LamB/YcsF family proteins, and YdjC-family proteins.


Pssm-ID: 213020 [Multi-domain]  Cd Length: 142  Bit Score: 45.13  E-value: 6.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  87 YGSRAGFWRIHNEFQKRGLPLTVF--------GVAMALARHPEIVQAISEANYDVVSHGWRWI--HYQSMDAKTERQHIQ 156
Cdd:cd10585    13 EGSPAALQRLLDLLEGYGIPATLFvipgnanpDKLMKSPLNWDLLRELLAYGHEIGLHGYTHPdlAYGNLSPEEVLEDLL 92
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1338958651 157 QAVDVLMDLFGKAPTGWYTGR-DSPNTRRLVVEQGGFSYDSDYY 199
Cdd:cd10585    93 RARRILEEAGGQPPKGFRAPGgNLSETVKALKELGDIQYDSDLA 136
CE4_CDA_like_1 cd10974
Putative catalytic domain of chitin deacetylase-like proteins with additional chitin-binding ...
239-313 1.14e-05

Putative catalytic domain of chitin deacetylase-like proteins with additional chitin-binding peritrophin-A domain (ChBD) and/or a low-density lipoprotein receptor class A domain (LDLa); Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues. CDAs have been isolated and characterized from various bacterial and fungal species and belong to the larger carbohydrate esterase 4 (CE4) superfamily. This family includes many CDA-like proteins mainly from insects, which contain a putative CDA-like catalytic domain similar to the catalytic NodB homology domain of CE4 esterases. In addition to the CDA-like domain, family members contain two additional domains, a chitin-binding peritrophin-A domain (ChBD) and a low-density lipoprotein receptor class A domain (LDLa), or have the ChBD domain but do not have the LDLa domain.


Pssm-ID: 200596  Cd Length: 269  Bit Score: 46.18  E-value: 1.14e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1338958651 239 FNTAEQFYTYLKDSFDVLYEeGESAPKMLSvgMHCRLLG-RPGRFRALTRFLDYIQQHEKVWICTRQQIADhWIKH 313
Cdd:cd10974   197 ILSGDQVYEWLQHNFERHYL-TNRAPYGLY--FHTNWLKtKNELLRALQKFLDEILQLPDVYFVTMTQAIQ-WMQN 268
CE4_BsPdaB_like cd10949
Putative catalytic NodB homology domain of Bacillus subtilis putative polysaccharide ...
118-171 1.51e-05

Putative catalytic NodB homology domain of Bacillus subtilis putative polysaccharide deacetylase PdaB, and its bacterial homologs; The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. This family is represented by the putative polysaccharide deacetylase PdaB encoded by the pdaB gene on sporulation of Bacillus subtilis. Although its biochemical properties remain to be determined, the PdaB (YbaN) protein is essential for maintaining spores after the late stage of sporulation and is highly conserved in spore-forming bacteria. The glycans of the spore cortex may be candidate PdaB substrates. Based on sequence similarity, the family members are classified as carbohydrate esterase 4 (CE4) superfamily members. However, the classical His-His-Asp zinc-binding motif of CE4 esterases is missing in this family.


Pssm-ID: 200573 [Multi-domain]  Cd Length: 192  Bit Score: 45.10  E-value: 1.51e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1338958651 118 RHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPT 171
Cdd:cd10949    45 RHPELVKRIVADGHEIGSHGYRYKNYSDYEDEEIKKDLLRAQQAIEKVTGVKPT 98
CE4_NodB_like_6s_7s cd10917
Catalytic NodB homology domain of rhizobial NodB-like proteins; This family belongs to the ...
95-190 2.29e-05

Catalytic NodB homology domain of rhizobial NodB-like proteins; This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.


Pssm-ID: 213022 [Multi-domain]  Cd Length: 171  Bit Score: 44.15  E-value: 2.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  95 RIHNEFQKRGLPLTVFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPTgWY 174
Cdd:cd10917    18 KILDILAEYGVKATFFVVGENVEKHPDLVRRIVAEGHEIGNHTYSHPDLTKLSPEEIRAEIERTQDAIEEATGVRPR-LF 96
                          90
                  ....*....|....*....
gi 1338958651 175 ---TGRDSPNTRRLVVEQG 190
Cdd:cd10917    97 rppYGAYNPEVLAAAAELG 115
CE4_CDA_like_2 cd10975
Putative catalytic domain of chitin deacetylase-like proteins; Chitin deacetylases (CDAs, EC 3. ...
240-312 3.25e-05

Putative catalytic domain of chitin deacetylase-like proteins; Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues. CDAs have been isolated and characterized from various bacterial and fungal species and belong to the larger carbohydrate esterase 4 (CE4) superfamily. This family includes many midgut-specific CDA-like proteins mainly from insects, such as Tribolium castaneum CDAs (TcCDA6-9). These proteins contain a putative CDA-like catalytic domain similar to the catalytic NodB homology domain of CE4 esterases. In addition to the CDA-like domain, some family members have an additional chitin-binding peritrophin-A domain (ChBD).


Pssm-ID: 200597  Cd Length: 268  Bit Score: 44.62  E-value: 3.25e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1338958651 240 NTAEQFYTYLKDSFDVLYEeGESAPkmLSVGMHCRLLGR-PGRFRALTRFLDYIQQHEKVWICTRQQIADhWIK 312
Cdd:cd10975   197 GTADEVYDWLLSNFERHYN-TNRAP--FGLYLHASWFEFtPNRLEGFKKFLDELLSLDDVYLVTISQAIE-WMR 266
CE4_BsYlxY_like cd10950
Putative catalytic NodB homology domain of uncharacterized protein YlxY from Bacillus subtilis ...
118-174 4.55e-04

Putative catalytic NodB homology domain of uncharacterized protein YlxY from Bacillus subtilis and its bacterial homologs; The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. This family is represented by Bacillus subtilis putative polysaccharide deacetylase BsYlxY, encoded by the ylxY gene, which is a member of the carbohydrate esterase 4 (CE4) superfamily. Although its biological function still remains unknown, BsYlxY shows high sequence homology to the catalytic domain of Bacillus subtilis pdaB gene encoding a putative polysaccharide deacetylase (BsPdaB), which is essential for the maintenance of spores after the late stage of sporulation and is highly conserved in spore-forming bacteria. However, disruption of the ylxY gene in B. subtilis did not cause any sporulation defect. Moreover, the Asp residue in the classical His-His-Asp zinc-binding motif of CE4 esterases is mutated to a Val residue in this family. Other catalytically relevant residues of CE4 esterases are also not conserved, which suggest that members of this family may be inactive.


Pssm-ID: 200574 [Multi-domain]  Cd Length: 188  Bit Score: 40.34  E-value: 4.55e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1338958651 118 RHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDVLMDLFGKAPTgWY 174
Cdd:cd10950    46 KNPDLVRKIAKDGHEIGNHGYSHPDPSQLSYEQNREEIRKTNEIIEEITGEKPK-LF 101
CE4_NodB_like_3 cd10959
Catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases; This ...
82-190 6.61e-04

Catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases; This family includes many uncharacterized bacterial polysaccharide deacetylases. Although their biological function still remains unknown, members in this family show high sequence homology to the catalytic NodB homology domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Like SpPgdA, this family is a member of the carbohydrate esterase 4 (CE4) superfamily.


Pssm-ID: 200582 [Multi-domain]  Cd Length: 187  Bit Score: 39.90  E-value: 6.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1338958651  82 DSLYEYGSRAGFwrihnefqkrglpltvFGVAMALARHPEIVQAISEANYDVVSHGWRWIHYQSMDAKTERQHIQQAVDV 161
Cdd:cd10959    21 DLLARHGAKATF----------------FVVGERAERHPDLIRRIVDEGHEIGNHGYRHRHPWLRSPWKAIRDLRRAARI 84
                          90       100       110
                  ....*....|....*....|....*....|..
gi 1338958651 162 LMDLFGKAPTgWYT---GRDSPNTRRLVVEQG 190
Cdd:cd10959    85 IEQLTGRPPR-YYRppwGHLNLATLLAARRLG 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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