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Conserved domains on  [gi|133855739|gb|ABO40077|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Arminda latifrons]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-353 6.26e-136

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 398.75  E-value: 6.26e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHL 80
Cdd:MTH00165 219 SSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHL 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  81 LAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLIF 160
Cdd:MTH00165 299 LTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIF 378

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 161 ILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIVLPFYLKFLT 240
Cdd:MTH00165 379 FLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLT 458

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 241 IIVVVLGSYFGYFISNLIFSSGLFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGYFSSKSLDYSWGELFGGQGLYSL 320
Cdd:MTH00165 459 LFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNF 538

                        330       340       350
                 ....*....|....*....|....*....|...
gi 133855739 321 FIYMINYIQGLYDSNFKIYLLTFIFWMFLLFMM 353
Cdd:MTH00165 539 LKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLL 571
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-353 6.26e-136

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 398.75  E-value: 6.26e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHL 80
Cdd:MTH00165 219 SSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHL 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  81 LAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLIF 160
Cdd:MTH00165 299 LTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIF 378

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 161 ILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIVLPFYLKFLT 240
Cdd:MTH00165 379 FLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLT 458

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 241 IIVVVLGSYFGYFISNLIFSSGLFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGYFSSKSLDYSWGELFGGQGLYSL 320
Cdd:MTH00165 459 LFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNF 538

                        330       340       350
                 ....*....|....*....|....*....|...
gi 133855739 321 FIYMINYIQGLYDSNFKIYLLTFIFWMFLLFMM 353
Cdd:MTH00165 539 LKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLL 571
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-254 2.55e-49

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 174.57  E-value: 2.55e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSL-GWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFH 79
Cdd:COG1009  250 AATMVKAGVYLLARLSPLFALSPVwLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFH 329

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-MVCLSWINCL 158
Cdd:COG1009  330 LLTHAFFKALLFLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPL 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 159 IFILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWL---------IFPIPYT 229
Cdd:COG1009  409 LLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELH 488

                        250       260
                 ....*....|....*....|....*
gi 133855739 230 IVLPFYLKFLTIIVVVLGSYFGYFI 254
Cdd:COG1009  489 LAHGLLLNALPLLLSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-254 8.12e-42

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 153.98  E-value: 8.12e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739    3 TLVTAGVYLLIRFSPMLN-VYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHLL 81
Cdd:TIGR01974 254 TMVTAGVYLVARTSPLFElSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLM 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   82 AHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLIFI 161
Cdd:TIGR01974 334 THAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFV 413

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  162 LYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIV---------- 231
Cdd:TIGR01974 414 AGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehh 493

                         250       260
                  ....*....|....*....|....
gi 133855739  232 -LPFYLKFLTIIVVVLGSYFGYFI 254
Cdd:TIGR01974 494 hVPALEIWSPTAVAILGILLAYLL 517
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 173-353 1.12e-41

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 143.85  E-value: 1.12e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  173 YSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIVLPFYLKFLTIIVVVLGSYFGY 252
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  253 FISNLIFSSGLFSLNMlNYVSFAGSMWFMPFLSTNFISYLPLKFGYFSSKSLDYSWGELFGGQGLYSLFIYMINYIQGLY 332
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170       180
                  ....*....|....*....|.
gi 133855739  333 DSNFKIYLLTFIFWMFLLFMM 353
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLLLLLL 180
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-353 6.26e-136

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 398.75  E-value: 6.26e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHL 80
Cdd:MTH00165 219 SSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHL 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  81 LAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLIF 160
Cdd:MTH00165 299 LTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIF 378

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 161 ILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIVLPFYLKFLT 240
Cdd:MTH00165 379 FLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLT 458

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 241 IIVVVLGSYFGYFISNLIFSSGLFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGYFSSKSLDYSWGELFGGQGLYSL 320
Cdd:MTH00165 459 LFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNF 538

                        330       340       350
                 ....*....|....*....|....*....|...
gi 133855739 321 FIYMINYIQGLYDSNFKIYLLTFIFWMFLLFMM 353
Cdd:MTH00165 539 LKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLL 571
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-353 2.48e-89

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 278.96  E-value: 2.48e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNvySLGWF---LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAF 77
Cdd:MTH00207 218 SSTLVTAGVFLLIRFYPFLS--STYWFnpaLLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLAL 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  78 FHLLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINC 157
Cdd:MTH00207 296 FHLITHALFKALLFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNS 375

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 158 LIFILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIVLPFYLK 237
Cdd:MTH00207 376 LMILMIFLATALTAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYK 455

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 238 FLTIIVVVLGSYFGYFISNLIFSSGLFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGYFSSKSLDYSWGELFGGQGL 317
Cdd:MTH00207 456 LLPLLVVTLGALLAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGT 535

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 133855739 318 YSLFIYMINYIQGLYDSNFKIYL-LTFIFWMFLLFMM 353
Cdd:MTH00207 536 FKMFSRSSNNVMKLQKNIPNNYLmMSFVLLTIIIIMT 572
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-353 4.21e-89

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 278.26  E-value: 4.21e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLG-WFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFH 79
Cdd:MTH00151 215 SSTLVTAGVFLLIRFFPFLSSSSGFsSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFH 294

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLI 159
Cdd:MTH00151 295 LYTHALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLM 374

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 160 FILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIVLPFYLKFL 239
Cdd:MTH00151 375 VLLMFVGVGLTALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLL 454

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 240 TIIVVVLGSYFGYFisnlIFSSGLFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGYFSSKSLDYSWGELFGGQGLYS 319
Cdd:MTH00151 455 IGFVILLGLFLSFG----FWDSGFSSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFK 530

                        330       340       350
                 ....*....|....*....|....*....|....
gi 133855739 320 LFIYMINYIQGLYDSNFKIYLLTFIFWMFLLFMM 353
Cdd:MTH00151 531 ANKSFSVLNESWPVKWFNFFIGLILLLVLFLVVI 564
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-352 3.09e-85

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 268.05  E-value: 3.09e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLN-VYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFH 79
Cdd:MTH00209 214 SSTLVTAGVYLLIRFFPSLFsSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFH 293

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLI 159
Cdd:MTH00209 294 LITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMT 373

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 160 FILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIVLPFYLKFL 239
Cdd:MTH00209 374 LILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLL 453

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 240 TIIVVVLGSYFGYFISNLIFssglFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGYFSSKSLDYSWGELFGGQGLYS 319
Cdd:MTH00209 454 PIMLILFGVLLMYMVLKKNF----FLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFK 529

                        330       340       350
                 ....*....|....*....|....*....|...
gi 133855739 320 LFIYMINYIQGLYDSNFKIYLLTFIFWMFLLFM 352
Cdd:MTH00209 530 VLKKSSKLSQIIQNNSLKLFVTFMMLILLGVIL 562
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-353 1.78e-67

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 222.52  E-value: 1.78e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSL-GWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFH 79
Cdd:MTH00211 243 SSTMVVAGVFLLIRLSPLFQNNQLiLGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLH 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLI 159
Cdd:MTH00211 323 ICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWA 402

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 160 FILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIV-LPFYLKF 238
Cdd:MTH00211 403 LLLTLLATSLTAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKL 482

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 239 LTIIVVVLGSYFGYFISNLIFSSglfslNMLNYVSFAGSMWFMPFLSTNFISYLPLKFG-YFSSKSLDYSWGELFGGQGL 317
Cdd:MTH00211 483 MPLLVTIVGLLLGLELVNLTHKQ-----LKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGqTLSTHLMDLGWYEKLGPKGL 557

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 133855739 318 YSLFIYMINYIQGLYDSNFKIYLLTFIFWMFLLFMM 353
Cdd:MTH00211 558 GVNQKKLIKLVTSPQQGLIKSYLALLLLSLLLILLL 593
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-353 1.89e-64

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 214.64  E-value: 1.89e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGWFL-LLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFH 79
Cdd:MTH00004 248 SSTMVVAGIFLLIRTHPLLQNNQTALTIcLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLH 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLI 159
Cdd:MTH00004 328 ISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWA 407

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 160 FILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPI-PYTIVLPFYLKF 238
Cdd:MTH00004 408 LLLTLLATSFTAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKL 487

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 239 LTIIVVVLGSYFGYFISNLifSSGLFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGY-FSSKSLDYSWGELFGGQGL 317
Cdd:MTH00004 488 AALIVTILGILLALELSNM--TTTLTPPKQNTLHNFSNQLAFFNPLTHRLLPMTLLKSSQkIATHLIDLSWLEKMGPKGL 565

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 133855739 318 YSLFIYMINYIQGLYDSNFKIYLLTFIFWMFLLFMM 353
Cdd:MTH00004 566 ANLQLTASKTLTTLQKGLIKNYLTSFALTILLLLLL 601
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-351 9.96e-63

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 210.60  E-value: 9.96e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSlgWFL---LLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAF 77
Cdd:MTH00208 275 SSTMVVAGVFLLIRTSPLISNSP--WFLslcLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLAL 352

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  78 FHLLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINC 157
Cdd:MTH00208 353 FHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNL 432

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 158 LIFILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPyTIVLPFYLK 237
Cdd:MTH00208 433 LSIILALIATLLTAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILK 511

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 238 FLTIIVVVLGSyfgYFISNLIFSSGLFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGYFSSKSLDYSWGELFGGQGL 317
Cdd:MTH00208 512 SLPLIVTIIGA---AFSFSFLLSLSSNPINSNFFSFLSNQWFFVNISHSIIISFSFFTSLFGSTRTLDRGWSENIGPQGI 588

                        330       340       350
                 ....*....|....*....|....*....|....
gi 133855739 318 YSLFIYMINYIQGLYDSNFKIYLLTFIFWMFLLF 351
Cdd:MTH00208 589 GNTSSTLSKSYQLTQTGYIKQYLLSSTLLFLLIL 622
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-353 9.45e-61

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 204.76  E-value: 9.45e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPML-NVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFH 79
Cdd:MTH00066 246 SSTMVVAGIFLLIRFHPLLeNNQTALTICLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFH 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLI 159
Cdd:MTH00066 326 ICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWA 405

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 160 FILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPI-PYTIVLPFYLKF 238
Cdd:MTH00066 406 LILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKL 485

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 239 LTIIVVVLGSYFGYFISNLIFSsglfSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGY-FSSKSLDYSWGELFGGQGL 317
Cdd:MTH00066 486 AALLVTLLGLLIALDLAKITSK----TTPKTKMHSFSNLLAFFPTIIHRLSPKTNLNSGQnIATHLTDMTWYEKSGPKGL 561

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 133855739 318 YSLFIYMINYIQGLYDSNFKIYLLTFIFWMFLLFMM 353
Cdd:MTH00066 562 TNQQLPPIKTITNIQTGLIKTYLTLFLITLLLMLIL 597
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-353 1.88e-54

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 188.14  E-value: 1.88e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGWFLLL-IGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFH 79
Cdd:MTH00108 249 SSTMVVAGVFLLIRFHPLMENNKTIQTLTLcLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLH 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLI 159
Cdd:MTH00108 329 ICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWA 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 160 FILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFP--IPyTIVLPFYLK 237
Cdd:MTH00108 409 LLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIP-QMTMPLYLK 487

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 238 FLTIIVVVLGSYFGYFISNLifSSGLFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGYFSSKSL-DYSWGELFGGQG 316
Cdd:MTH00108 488 LTALAVTILGFILALELNLL--TNNLKFKYPSNTFKFSNMLGYFPTIMHRLPPYMNLTMSQKLASMLlDLIWLEKILPKT 565

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 133855739 317 LYSLFIYMINYI---QGLydsnFKIYLLTFIFWMFLLFMM 353
Cdd:MTH00108 566 ISLIQMKASTTIsnqKGL----IKLYFLSFLITLTLSLLL 601
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-182 2.39e-51

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 180.03  E-value: 2.39e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPML--NVYSLGWFLLLIGCMTMFMA--GLGANfefDLKSIIALSTLSQLGLMMSILAMGYPKLA 76
Cdd:MTH00137 254 SSTMVVAGIFLLIRLSPLMenNQTALTTCLCLGALTTLFTAtcALTQN---DIKKIVAFSTSSQLGLMMVTIGLNQPQLA 330

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  77 FFHLLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWIN 156
Cdd:MTH00137 331 FLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLN 410

                        170       180
                 ....*....|....*....|....*..
gi 133855739 157 CLIFILYFFSTGLTASYSFRL-FYYSM 182
Cdd:MTH00137 411 AWALTLTLIATSFTAVYSLRVvFFVSM 437
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-254 2.55e-49

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 174.57  E-value: 2.55e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSL-GWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFH 79
Cdd:COG1009  250 AATMVKAGVYLLARLSPLFALSPVwLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFH 329

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-MVCLSWINCL 158
Cdd:COG1009  330 LLTHAFFKALLFLGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPL 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 159 IFILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWL---------IFPIPYT 229
Cdd:COG1009  409 LLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELH 488

                        250       260
                 ....*....|....*....|....*
gi 133855739 230 IVLPFYLKFLTIIVVVLGSYFGYFI 254
Cdd:COG1009  489 LAHGLLLNALPLLLSLLGIALGYLL 513
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-351 1.85e-44

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 161.40  E-value: 1.85e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGWFLL-LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFH 79
Cdd:MTH00020 249 AATMVTAGVFLLIRSSPLFEQAPLALIIVtIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFH 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSwiNCLI 159
Cdd:MTH00020 329 LMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQ--YYLI 406

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 160 FILYF--FSTGLTASYSFRLFYYSMIGD-NNYYSSFSFDDKG-YYISFGMISLLFVAVFGGSFLSWLIFPIPYTI--VLP 233
Cdd:MTH00020 407 FAYWLgcFSALLTAFYSIRLIYLTFLSNtNLKKAVFFHLHEGdWNLLLPLGILALGSIFVGYLAKEMIWSFQITLppIVP 486

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 234 FYLKFLTIIVVVLG---SYFGYFISNLIFSSGLFSLNMLNYvSFAGSMWFMPFLSTNFISYLPLKFGYF-SSKSLDYSWG 309
Cdd:MTH00020 487 LSIKLLPVFLSLGGiglVIILYFYSSKTFRVPFSFIGRNSY-TFLGSAWQFNYILNYFLIKKIWKGGHLiSYRTIDKGVL 565

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 133855739 310 ELFGGQGLYSLFIYMINYIQGLY-DSNFKIYLLTFIFWMFLLF 351
Cdd:MTH00020 566 ELVGPKGISNFLIILTQGLSSLQsGLVFNYALVILIGVAIFIW 608
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-349 2.62e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 158.25  E-value: 2.62e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGWFLL-LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFH 79
Cdd:MTH00210 250 AATMVTAGVFLIIRSGPLFEGSPLALTIVtILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFH 329

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLI 159
Cdd:MTH00210 330 LMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFA 409

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 160 FILYFFSTGLTASYSFRLFYYSMIGDNN--YYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIVLPFYLK 237
Cdd:MTH00210 410 YWLGSFSALLTAFYSIRLIYLTFITNTNskKEVFIGVHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIK 489

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 238 FLTIIVVVLGSYFGYFISNL------IFSSGLFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGYF-SSKSLDYSWGE 310
Cdd:MTH00210 490 MIPLLFSLLGALLAFVIYNSmvflikISRRGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHLiTYRIIDRGLLE 569

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 133855739 311 LFGGQGLYSLFIYMINYIQGLYDSNFKIYLLTFIFWMFL 349
Cdd:MTH00210 570 IIGPRGISKVLIKLTQKISNLQSGMVFNYALIMIIFTTL 608
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-254 8.12e-42

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 153.98  E-value: 8.12e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739    3 TLVTAGVYLLIRFSPMLN-VYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHLL 81
Cdd:TIGR01974 254 TMVTAGVYLVARTSPLFElSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLM 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   82 AHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLIFI 161
Cdd:TIGR01974 334 THAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFV 413

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  162 LYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIV---------- 231
Cdd:TIGR01974 414 AGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehh 493

                         250       260
                  ....*....|....*....|....
gi 133855739  232 -LPFYLKFLTIIVVVLGSYFGYFI 254
Cdd:TIGR01974 494 hVPALEIWSPTAVAILGILLAYLL 517
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 173-353 1.12e-41

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 143.85  E-value: 1.12e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  173 YSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIFPIPYTIVLPFYLKFLTIIVVVLGSYFGY 252
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  253 FISNLIFSSGLFSLNMlNYVSFAGSMWFMPFLSTNFISYLPLKFGYFSSKSLDYSWGELFGGQGLYSLFIYMINYIQGLY 332
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170       180
                  ....*....|....*....|.
gi 133855739  333 DSNFKIYLLTFIFWMFLLFMM 353
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLLLLLL 180
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 3-254 1.40e-40

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 150.69  E-value: 1.40e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   3 TLVTAGVYLLIRFSPMLN-VYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMsiLAMG---YPkLAFF 78
Cdd:PRK06590 258 TMVTAGVYLVARMSPLFElSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMF--LALGvgaYA-AAIF 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  79 HLLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEmVCLSWINCL 158
Cdd:PRK06590 335 HLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHIN 413

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 159 IFILYFFSTGLTASYSFRLFYYSMIGDNnyyssfsfDDKGY-------YISFGMISLLFVAVFGG-----SFLSWLIFPI 226
Cdd:PRK06590 414 LFVAGLVGAFLTAFYSFRLIFLVFHGKE--------KEKIHhphespaVMTLPLIVLAVLSVFAGalivpPFLGVLPLTT 485

                        250       260       270
                 ....*....|....*....|....*....|...
gi 133855739 227 PYTIV-----LPFYLKFLTIIVVVLGSYFGYFI 254
Cdd:PRK06590 486 ELAHGeaehhLPVWVALLPLVVALAGIALAWLL 518
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
3-185 3.26e-33

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 130.14  E-value: 3.26e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   3 TLVTAGVYLLIRFSPMLN-VYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHLL 81
Cdd:PRK07376 268 TMVAAGVFLVARMYPVFEqFPAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLM 347

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  82 AHALFKALLFMCAGSMIHNLND--------SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLS 153
Cdd:PRK07376 348 THAYFKAMLFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA 427

                        170       180       190
                 ....*....|....*....|....*....|..
gi 133855739 154 wiNCLIFILYFFSTGLTASYSFRLFYYSMIGD 185
Cdd:PRK07376 428 --NPALWFVGFLTAGMTAFYMFRMYFLTFEGE 457
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-344 2.08e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 121.99  E-value: 2.08e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGWFLLLI-GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAM-GYPKLAFF 78
Cdd:MTH00032 264 AATMVTAGVFLMIRSFPLFEKAPLTLLIITIfGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLF 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  79 HLLAHALFKALLFMCAGSMIHNLN-DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCL----- 152
Cdd:MTH00032 344 HLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTYSgrnmg 423

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 153 -------------------------------SWINCLIFILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYI 201
Cdd:MTH00032 424 ipfgssllkiqgdigikkddrgsiggpegypSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIV 503

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 202 SFGMISLLFVAVFGGSFLSWLIFPI-----------PYTIVLPFYLKFLTIIVVVLGSYFGYFISNLIFSSGLFSLNMLN 270
Cdd:MTH00032 504 DKRVLTVLSLLCFGAIFVGYLIQDIligdiehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLS 583

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 133855739 271 YVSFAGSMWFMPFLSTNFISYLPLKFGYFSS-KSLDYSWGELFGGQGLYSLFIYMINYIQGLYDSNFKIYLLTFI 344
Cdd:MTH00032 584 IYSFLGGAWQGDHLINKLVAIPLFSFGHWGIyKTLDRGWLELFGPQGISTIALRVSQFISNLQSGVISRYALVLL 658
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-166 3.95e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.56  E-value: 3.95e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739    1 SSTLVTAGVYLLIRFSPMLNVYSLGW--FLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYP---KL 75
Cdd:pfam00361 121 AATLVKAGGYGLIRRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQA 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   76 AFFHLLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWI 155
Cdd:pfam00361 201 AIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASW 280

                         170
                  ....*....|.
gi 133855739  156 NCLIFILYFFS 166
Cdd:pfam00361 281 IFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 3-178 8.23e-27

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 111.52  E-value: 8.23e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   3 TLVTAGVYLLIRFSPMLNVY-SLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHLL 81
Cdd:CHL00025 268 TMVAAGIFLVARLLPLFIVIpYIMNLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLI 347

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  82 AHALFKALLFMCAGSMIHNL--------NDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMvclS 153
Cdd:CHL00025 348 THAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---S 424

                        170       180
                 ....*....|....*....|....*.
gi 133855739 154 WINCLIF-ILYFFSTGLTASYSFRLF 178
Cdd:CHL00025 425 WLYSPIFaIIAWSTAGLTAFYMFRIY 450
PRK12650 PRK12650
DUF4040 family protein;
4-148 4.18e-25

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 106.67  E-value: 4.18e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   4 LVTAGVYLLIRFSPML-NVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYP---KLAFFH 79
Cdd:PRK12650 250 VVKAGIYLLLRFSPVFhDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVVH 329

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 133855739  80 LLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK12650 330 TLAHALFKSSLFMLIGVVDHQAG-TRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-180 8.67e-25

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 104.07  E-value: 8.67e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFS----PMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKL- 75
Cdd:COG0651  244 SGLLTKVGVYAILRVLtllfGADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGl 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  76 --AFFHLLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVcLS 153
Cdd:COG0651  324 agALFHLLNHALAKALLFLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LE 401

                        170       180
                 ....*....|....*....|....*..
gi 133855739 154 WINCLIFILYFFSTGLTASYSFRLFYY 180
Cdd:COG0651  402 AGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-348 1.45e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 101.53  E-value: 1.45e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHL 80
Cdd:MTH00095 203 SSTLVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHL 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  81 LAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLIF 160
Cdd:MTH00095 283 LSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFS 362

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 161 ILYFFSTGLTASYSFRLFYYSMIGDNNYYSSFSFDDKGYYISFGMIsllfvaVFGGSFLSWLIFPIPYTIVLPFYLKFLT 240
Cdd:MTH00095 363 LMFFFSVFLTFGYSYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLV------FFSVFFLWWLNFNLLNLPSLFLYLDFYV 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 241 IIVVVLgsyFGYFISNLIFSSGLFSLNMLNYVSFAGSMWFMPFLSTNFISYLPLKFGYFssksldyswgelfgGQGLYSL 320
Cdd:MTH00095 437 PLFYLF---MIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYK--------------GFNFFSS 499

                        330       340
                 ....*....|....*....|....*...
gi 133855739 321 FIYMINYIQGLYDSNFKIYLLTFIFWMF 348
Cdd:MTH00095 500 FSFFFFSYMKSFKYNSLLILLFLIFLFL 527
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-180 4.13e-22

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 96.87  E-value: 4.13e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFS------PMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPK 74
Cdd:PRK08375 241 SGLVTKVAVYALIRIYftvfggDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPL 320

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  75 L---AFFHLLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEMV 150
Cdd:PRK08375 321 AlaaGLLHLLHHALMKGALFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAV 399

                        170       180       190
                 ....*....|....*....|....*....|
gi 133855739 151 CLSWINCLIFILyfFSTGLTASYSFRLFYY 180
Cdd:PRK08375 400 EAGQWLVLAVLL--ASSLLALLYFLRIWYR 427
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-148 4.19e-22

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 97.68  E-value: 4.19e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLgWF--LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYP---KL 75
Cdd:PRK12647 234 SATMVKAGIYLLARLNPVLGGTPL-WQtiLPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSElaiKA 312

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 133855739  76 AFFHLLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK12647 313 AVLFLVAHSLYKGALFMVAGIIDHETG-TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 4-179 1.60e-21

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 96.15  E-value: 1.60e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   4 LVTAGVYLLIRFSPMLNVySLGWFLLLI--GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHL- 80
Cdd:PRK12644 245 MVKAGIYLVARLAPGFAD-VPVWRPTVLvlGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLa 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  81 --LAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMV----CLSW 154
Cdd:PRK12644 324 mlLAHALFKAALFLVVGIIDHSTG-TRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGP 402

                        170       180
                 ....*....|....*....|....*
gi 133855739 155 INCLIFILYFFSTGLTASYSFRLFY 179
Cdd:PRK12644 403 AGPVVLAGIVLGSILTVAYSLRFLW 427
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-176 3.36e-21

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 94.87  E-value: 3.36e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLgWFLL--LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPK---L 75
Cdd:PRK12648 246 SATMVKAGVFLLARLWPVLAGTEE-WFWIvgGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLaavA 324

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  76 AFFHLLAHALFKALLFMCAGSMIHNlNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILEMVC 151
Cdd:PRK12648 325 AIFHIINHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHL 403

                        170       180
                 ....*....|....*....|....*
gi 133855739 152 LSWINCLIFILYFFSTGLTASYSFR 176
Cdd:PRK12648 404 LGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 1-150 3.74e-20

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 91.91  E-value: 3.74e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVySLGWFLL--LIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKL--- 75
Cdd:PRK12645 249 SATMVKAGIYLVARFTPIFAG-SQVWFWTvtLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyq 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  76 -------------AFFHLLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 142
Cdd:PRK12645 328 gddskiyaaaitaAIFHLINHATFKGSLFMIVGIVDHETG-TRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLS 406


                 ....*...
gi 133855739 143 KDLILEMV 150
Cdd:PRK12645 407 KEMFFESM 414
PRK12646 PRK12646
DUF4040 family protein;
1-148 2.52e-19

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 89.43  E-value: 2.52e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSL-GWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMG-------- 71
Cdd:PRK12646 249 SATMVKAGIFLLFRFTPLLGLSNMyIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqq 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  72 ------YPKLAF---FHLLAHALFKALLFMCAGSMIHNlNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 142
Cdd:PRK12646 329 daiasiYVFVLFaalFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLS 407


                 ....*.
gi 133855739 143 KDLILE 148
Cdd:PRK12646 408 KEMFLD 413
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-148 1.20e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 84.11  E-value: 1.20e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNvYSLGWFLLL--IGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSIlaMGY-----P 73
Cdd:PRK12649 253 SATMVKAGVYLVARIHPIFS-GTEAWFILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYttyheP 329

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 133855739  74 KLAF----FHLLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK12649 330 GLGVaaatFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 2-171 3.93e-17

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 82.65  E-value: 3.93e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   2 STLVTAGVYLLIRFSPMLNVYSLGW-FLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHL 80
Cdd:PRK07390 260 SVVVATGAWVLIKLQPVLALSPVALtVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLL 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  81 LAHALFKALLFMCAGSMIHNlNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILEMVCLSW-INCLI 159
Cdd:PRK07390 340 LTHAIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWaVSPWL 415

                        170
                 ....*....|..
gi 133855739 160 FILYFFSTGLTA 171
Cdd:PRK07390 416 VGVLLLVNALTA 427
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-184 8.37e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 81.30  E-value: 8.37e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   7 AGVYLLIR-----FSPMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMM-----SILAMGYPKL- 75
Cdd:PRK08376 264 AGLYALARvlfsiYGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglgvGLAALGDPAMa 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  76 ---------AFFHLLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLI 146
Cdd:PRK08376 344 sygeialagGIYHIVNHALYKALLFLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 133855739 147 LEMVCLswINCLIFILYFFSTGLTASYSFRLFYYSMIG 184
Cdd:PRK08376 423 YESSAL--FNPILGVIAMIGSVLTLASFVKVFHTAFFG 458
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-179 8.01e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 78.47  E-value: 8.01e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRF---------SPMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMG 71
Cdd:PRK12667 262 SGLVVNVGAYAIIRFlytifgispSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIG 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  72 YP---KLAFFHLLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK12667 342 TQlglAAALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFN 420

                        170       180       190
                 ....*....|....*....|....*....|.
gi 133855739 149 MVCLSWINCLIFILYFFSTgLTASYSFRLFY 179
Cdd:PRK12667 421 ALLESGFYLPALVLLIASA-ISLVGYFRAWY 450
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 1-177 1.16e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 74.80  E-value: 1.16e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVY----SLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYP--- 73
Cdd:PRK08377 245 SAFVVKAGLYAMARILYLMQNAngwsSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagv 324

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  74 KLAFFHLLAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeMVCLS 153
Cdd:PRK08377 325 DAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLS 402

                        170       180
                 ....*....|....*....|....
gi 133855739 154 WINCLIFILYFFSTGLTASYSFRL 177
Cdd:PRK08377 403 AGYTWPVALVLGASVVEAVYYFRL 426
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-269 6.64e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 72.60  E-value: 6.64e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHL 80
Cdd:MTH00063 196 SSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQL 275

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  81 LAHALFKALLFMCAGSMIHNLNDSQDIR-----FMGSIVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDLILEMVCLSWI 155
Cdd:MTH00063 276 VSHGVSKCLLFMLVGDVMSGSGGSQSSNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVF 350

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739 156 NCLIFILYFFSTGLTASYSFRLFyysMIGDNNYYSSFSFDDKGYYISFGMisllfvaVFGGSFLSWLIFPI-----PYTI 230
Cdd:MTH00063 351 NVSLLLVVILCVFLSYLYSFRLC---LILFGVKSSLSSGVRFLFFNSGLM-------VFLWLFINYYVFLLldevvYLGV 420

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 133855739 231 VLPFYLKFLTIIVVVLGSYFGYFISNLIFSSGLFSLNML 269
Cdd:MTH00063 421 FISLVLLLVQLLGLLVGVLFYDSNLFSNWSSSLFGCDNL 459
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-148 1.38e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 71.52  E-value: 1.38e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   5 VTAGVYLLIRFSPMlnVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLmmsILAMgyPKLAFFHLLAHA 84
Cdd:PRK07234 227 VKAGVFPLVRCALD--VPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGF---ILAA--PLVGGLYALAHG 299

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 133855739  85 LFKALLFMCAGSmIHNLNDSQDIRFMGSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK07234 300 LVKSTLFLCAGA-LPSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-153 5.61e-13

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 69.92  E-value: 5.61e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFS-PMLNVYSLGW--FLLLIGCMTMFMAGLGANFEFDLKSIIALST-------LSQLGLMMSILAM 70
Cdd:PRK06521 249 SGVMLKVAIYGILRVVfDLLGAPGWWWgvLVLALGAISAVLGVLYALAEHDLKRLLAYSTienigiiFVGLGLAMVFIAY 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  71 GYPKLA-------FFHLLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 143
Cdd:PRK06521 329 GMPLLAalaltaaLYHLLNHALFKSLLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSE 407

                        170
                 ....*....|
gi 133855739 144 DLILEMVCLS 153
Cdd:PRK06521 408 WLLLQSLLSS 417
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-148 1.66e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 68.60  E-value: 1.66e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFspMLNVYS----LGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMM----------- 65
Cdd:PRK08667 244 SGVMLKVAVYGLVRF--LMDVLSpelwWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILmgiglyvifgv 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  66 ---SILAMGYPKLAFFHLLAHALFKALLFMCAGSMIHNLNDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 142
Cdd:PRK08667 322 yglDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFAS 400


                 ....*.
gi 133855739 143 KDLILE 148
Cdd:PRK08667 401 ELLLYE 406
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
2-96 1.13e-11

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 65.88  E-value: 1.13e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   2 STLVTAGV-----YLLIRFSPML-NVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKL 75
Cdd:PRK08168 234 SALLHAGVvnlggFVLIRFAPLLeQAPPARWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYEL 313

                         90       100
                 ....*....|....*....|.
gi 133855739  76 AFFHLLAHALFKALLFMCAGS 96
Cdd:PRK08168 314 ALLHLVAHSLYKAHAFLSASE 334
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 5-179 4.94e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 63.86  E-value: 4.94e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   5 VTAGVYLLIRFSPMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYP---KLAFFHLL 81
Cdd:PRK08668 252 VLPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVF 331

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  82 AHALFKALLFMCAGSMIHNLNDSQdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLIFI 161
Cdd:PRK08668 332 NHALFKGLFFLIFAAVIYRTGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFM 410

                        170
                 ....*....|....*...
gi 133855739 162 LYFFSTGLTAsYSFRLFY 179
Cdd:PRK08668 411 AFFGSIGSFL-YVFRPLA 427
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
8-147 5.49e-11

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 63.76  E-value: 5.49e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   8 GVYLLIRFSPmlnvyslGWFLLL-IGC-MTMFMAGLgANFEFDLKSIIALSTLSQLGLMMSILAMGYPKL---AFFHLLA 82
Cdd:PRK12668 229 AVYALARAFP-------GTELLIyIGAaMAVYGVFF-ALLENDLRRLLSYHIVSQVGYMVAGIGIGTALAingAVAHAFN 300

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 133855739  83 HALFKALLFMCAGSMIHNLNDSqDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK12668 301 HILYKGLLFMSAGAVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 1-140 7.77e-11

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 63.31  E-value: 7.77e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGW--FLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMM-------SILAMG 71
Cdd:PRK08042 219 STVVMKIGLLGILTLSLLGGNAPLWWgvALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILlglgagvTGIALE 298

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 133855739  72 YPKL-------AFFHLLAHALFKALLFMCAGSMIHNlNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 140
Cdd:PRK08042 299 QPALialglvgGLYHLLNHSLFKSVLFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 8-184 1.37e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.41  E-value: 1.37e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   8 GVYLLIRFS-PMLN--VYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYP---KLAFFHLL 81
Cdd:COG1008  255 GGYGLLRFAlPLFPeaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPlglQGAVLQMV 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  82 AHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWIncLIFI 161
Cdd:COG1008  335 SHGLITAALFLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNP--WLAI 411

                        170       180
                 ....*....|....*....|...
gi 133855739 162 LYFFSTGLTASYSFRLFYYSMIG 184
Cdd:COG1008  412 LAALGLILTAAYLLWMYQRVFFG 434
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 4-147 2.16e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 61.53  E-value: 2.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   4 LVTAGVYLLIRFSPMLNVY--SLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGY--PKLAF-- 77
Cdd:PRK06525 249 MVKVGVYIFARAIQSMGPIphVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlgSRLALeg 328

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 133855739  78 --FHLLAHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK06525 329 siAYIFNHAFAKSLFFLVAGALSYSCG-TRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 21-179 2.03e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 58.67  E-value: 2.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  21 VYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPK---LAFFHLLAHALFKALLFMCAGSm 97
Cdd:PRK06589 276 IFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKalgAAILHLVSHSFAKICLFYSMGS- 354

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  98 IHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLS---WINCLIFILYFFSTGLTASYS 174
Cdd:PRK06589 355 IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYL 434


                 ....*
gi 133855739 175 FRLFY 179
Cdd:PRK06589 435 LKILS 439
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-148 2.56e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 58.42  E-value: 2.56e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   4 LVTAGVYLLIRFSPMLNVYSLGW---FLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKL---AF 77
Cdd:PRK07691 251 LTKVGVYAIARTFTLFFSHDTSFthyLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGmigAI 330

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 133855739  78 FHLLAHALFKALLFMCAGSMIHnLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK07691 331 YYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
8-187 7.78e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.80  E-value: 7.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   8 GVYLLIRFSPMLNVYS---LGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKL---AFFHLL 81
Cdd:PRK12663 252 GIYALIRVFTLLFPQErelLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLV 331

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  82 AHALFKALLFMCAGSMIHnLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE--MVCLSWINCLI 159
Cdd:PRK12663 332 HDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgaLDNGAYILLAL 410

                        170       180
                 ....*....|....*....|....*....
gi 133855739 160 FILyffsTGLTASYS-FRLFYYSMIGDNN 187
Cdd:PRK12663 411 MLI----TSLITMYSlFRIFFLAYWGDKD 435
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 8-147 1.45e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.90  E-value: 1.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   8 GVYLLIRFS-PMLNVYS--LGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLG-LMMSILAMGYPKL--AFFHLL 81
Cdd:PRK05846 257 GAYGLLRFSlPLFPDASheFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMI 336

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 133855739  82 AHALFKALLFMCAGSMIHNLNdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK05846 337 SHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 4-102 4.05e-07

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 51.57  E-value: 4.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   4 LVTAGVYLLIRFSPMLNVYSLGWFLLLIGCMTMFMaGLGANF-EFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHLLA 82
Cdd:PRK08601 245 LVNAGGIMLTRFSPLFHDDIAQILLLIFASISVLI-GTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLIL 323

                         90       100
                 ....*....|....*....|
gi 133855739  83 HALFKALLFMCAGSMIHNLN 102
Cdd:PRK08601 324 HGLFKATLFLQSGSAVPRFN 343
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-148 9.78e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 50.35  E-value: 9.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   4 LVTAGVYLLIRFSPML-NVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPK---LAFFH 79
Cdd:PRK12665 251 LTKVGVYAIIRTHTLLfPGGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAglsGAIYY 330

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 133855739  80 LLAHALFKALLFMCAGsMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK12665 331 VAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-147 4.62e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.21  E-value: 4.62e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   1 SSTLVTAGVYLLIRFSPMLNVYSLGW----FLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLA 76
Cdd:PRK08676 245 SGTVLNIGIYGILRLSALLRQSGAAEqfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLAL 324

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 133855739  77 F---FHLLAHALFKALLFMCAGsMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK08676 325 FwmlFHMLAHSLVKSGLFFSAG-ILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFIL 397
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 48-147 1.18e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 46.85  E-value: 1.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  48 DLKSIIALSTLSQLGLMMSILAMGYPkLAFF----HLLAHALFKALLFMCAGSMIHNLnDSQDIRFMGSIVNFMPLTSVC 123
Cdd:PRK06458 304 DIKRLFAYSSIEHMGLIAFALGIGGP-LGIFaallHMLNHSLTKSAIFFASGNVLQKY-GTRDINVIRGLLKVSPLTGWG 381

                         90       100
                 ....*....|....*....|....
gi 133855739 124 FNVSSLSLCGMPFLAGFYSKDLIL 147
Cdd:PRK06458 382 LMLGALAIAGMPPFGVFISEFLIL 405
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
3-148 4.74e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 45.02  E-value: 4.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   3 TLVTAGVYLLIRFSPMLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYP---KLAFFH 79
Cdd:PRK06277 244 VLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPlgiVAGIFH 323

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 133855739  80 LLAHALFKALLFMCAGSmIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:PRK06277 324 AINHVIYKSALFLGAGI-VSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-143 5.96e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 44.72  E-value: 5.96e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739   7 AGVYLLIR-FSPMLNVYSLGWFLLL--IGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYP---KLAFFHL 80
Cdd:COG1007  248 AAFAALLRlLVEAFPGLAADWQLLLavLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPlgvSAALFYL 327

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 133855739  81 LAHALFKALLFMCAGSMIHNLNDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 143
Cdd:COG1007  328 LAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-143 8.38e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.26  E-value: 8.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  27 FLLLIGCMTMFmAGLGANFEFDLKSIIALSTLSQLG---LMMSILAMGYPKLAFFHLLAHALFKALLFMCAGSMIHNLnD 103
Cdd:PRK12662 282 FMILAALAIVF-GSVLAILSKDIKRIFAYSSISHIGyiiLAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHF-G 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 133855739 104 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 143
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 28-148 3.36e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 39.04  E-value: 3.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  28 LLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGyPKLAFFHLLAHALFKALLFMcagsmIHNLNDSQDI 107
Cdd:MTH00112 154 LLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL-----TLNTTSTKTL 227

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 133855739 108 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 148
Cdd:MTH00112 228 KDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQ 268
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 18-224 5.21e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 38.27  E-value: 5.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  18 MLNVYSLGWFLLLIGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILAMGYPKLAFFHLLAHALFKALLFMCAGSM 97
Cdd:MTH00160 136 LLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFN 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133855739  98 IHNLNDSQDIRFMGSIVNFMpltsvcFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCLIFILYFFSTgLTASYSFRL 177
Cdd:MTH00160 216 IFFLNQLFNSNNKSKKIKFL------LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSL-ITLYFYLRI 288

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 133855739 178 FYYSMIGdNNYYSSFSFDDKGYYISFGMISLLFVAVFGGSFLSWLIF 224
Cdd:MTH00160 289 SYSSLML-NYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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