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Conserved domains on  [gi|1337314231|gb|AUW37883|]
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hypothetical protein AL542_18555 [Grimontia hollisae]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
WH2 super family cl41728
Wiskott-Aldrich Syndrome Homology (WASP) region 2 (WH2 motif), and similar proteins; This ...
261-290 3.80e-06

Wiskott-Aldrich Syndrome Homology (WASP) region 2 (WH2 motif), and similar proteins; This family contains the Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 (WH2) as well as thymosin-beta (Tbeta; also called beta-thymosin or betaT) domains that are small, widespread intrinsically disordered actin-binding peptides displaying significant sequence variability and different regulations of actin self-assembly in motile and morphogenetic processes. These WH2/betaT peptides are identified by a central consensus actin-binding motif LKKT/V flanked by variable N-terminal and C-terminal extensions; the betaT shares a more extended and conserved C-terminal half than WH2. These single or repeated domains are found in actin-binding proteins (ABPs) such as the hematopoietic-specific protein WASP, its ubiquitously expressed ortholog neural-WASP (N-WASP), WASP-interacting protein (WAS/WASL-interacting protein family members 1 and 2), and WASP-family verprolin homologous protein (WAVE/SCAR) isoforms: WAVE1, WAVE2, and WAVE3. Also included are the WH2 domains found in inverted formin FH2 domain-containing protein (INF2), Cordon bleu (Cobl) protein, vasodilator-stimulated phosphoprotein (VASP) homology protein and actobindin (found in amoebae). These ABPs are commonly multidomain proteins that contain signaling domains and structurally conserved actin-binding motifs, the most important being the WH2 domain motif through which they bind actin in order to direct the location, rate, and timing for actin assembly in the cell into different structures, such as filopodia, lamellipodia, stress fibers, and focal adhesions. The WH2 domain motif is one of the most abundant actin-binding motifs in Wiskott-Aldrich syndrome proteins (WASPs) where they activate Arp2/3-dependent actin nucleation and branching in response to signals mediated by Rho-family GTPases. The thymosin beta (Tbeta) domains in metazoans act in cells as major actin-sequestering peptides; their complex with monomeric ATP-actin (G-ATP-actin) cannot polymerize at either filament (F-actin) end.


The actual alignment was detected with superfamily member cd22062:

Pssm-ID: 425359  Cd Length: 31  Bit Score: 43.53  E-value: 3.80e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 1337314231 261 SEGGRNALLSEISKFSKDRLRKTGSTESIN 290
Cdd:cd22062     1 SPPGRGALLSSIQGFSKGGLKKTVTVDRSA 30
Drf_FH1 pfam06346
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs) ...
156-177 2.80e-03

Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues.


:

Pssm-ID: 461881 [Multi-domain]  Cd Length: 157  Bit Score: 38.70  E-value: 2.80e-03
                          10        20
                  ....*....|....*....|...
gi 1337314231 156 PGDIPPAPPLP-SAVIPAPPELP 177
Cdd:pfam06346  30 GGGPPPPPPLPgSAAIPPPPPLP 52
 
Name Accession Description Interval E-value
WH2_DdVASP-like cd22062
Wiskott Aldrich syndrome homology region 2 (WH2 motif) found in Dictyostelium discoideum ...
261-290 3.80e-06

Wiskott Aldrich syndrome homology region 2 (WH2 motif) found in Dictyostelium discoideum Vasodilator-stimulated phosphoprotein (VASP) and similar proteins; This family contains the Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 (WH2) found in Dictyostelium discoideum vasodilator-stimulated phosphoprotein (VASP) and similar proteins. VASP belongs to the Ena/VASP protein family whose members act as actin polymerases that drive the processive elongation of filament barbed ends in membrane protrusions or at the surface of bacterial pathogens. These actin-associated proteins are involved in a range of processes dependent on cytoskeleton remodeling and cell polarity such as lamellipodial and filopodial dynamics in migrating cells. VASP plays a crucial role in filopodia formation, cell-substratum adhesion, and proper chemotaxis. It nucleates and bundles actin filaments via oligomers that use their WH2 domains to effect both the tethering of actin filaments and their processive elongation in sites of active actin assembly.


Pssm-ID: 409205  Cd Length: 31  Bit Score: 43.53  E-value: 3.80e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 1337314231 261 SEGGRNALLSEISKFSKDRLRKTGSTESIN 290
Cdd:cd22062     1 SPPGRGALLSSIQGFSKGGLKKTVTVDRSA 30
Drf_FH1 pfam06346
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs) ...
156-177 2.80e-03

Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues.


Pssm-ID: 461881 [Multi-domain]  Cd Length: 157  Bit Score: 38.70  E-value: 2.80e-03
                          10        20
                  ....*....|....*....|...
gi 1337314231 156 PGDIPPAPPLP-SAVIPAPPELP 177
Cdd:pfam06346  30 GGGPPPPPPLPgSAAIPPPPPLP 52
 
Name Accession Description Interval E-value
WH2_DdVASP-like cd22062
Wiskott Aldrich syndrome homology region 2 (WH2 motif) found in Dictyostelium discoideum ...
261-290 3.80e-06

Wiskott Aldrich syndrome homology region 2 (WH2 motif) found in Dictyostelium discoideum Vasodilator-stimulated phosphoprotein (VASP) and similar proteins; This family contains the Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 (WH2) found in Dictyostelium discoideum vasodilator-stimulated phosphoprotein (VASP) and similar proteins. VASP belongs to the Ena/VASP protein family whose members act as actin polymerases that drive the processive elongation of filament barbed ends in membrane protrusions or at the surface of bacterial pathogens. These actin-associated proteins are involved in a range of processes dependent on cytoskeleton remodeling and cell polarity such as lamellipodial and filopodial dynamics in migrating cells. VASP plays a crucial role in filopodia formation, cell-substratum adhesion, and proper chemotaxis. It nucleates and bundles actin filaments via oligomers that use their WH2 domains to effect both the tethering of actin filaments and their processive elongation in sites of active actin assembly.


Pssm-ID: 409205  Cd Length: 31  Bit Score: 43.53  E-value: 3.80e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 1337314231 261 SEGGRNALLSEISKFSKDRLRKTGSTESIN 290
Cdd:cd22062     1 SPPGRGALLSSIQGFSKGGLKKTVTVDRSA 30
Drf_FH1 pfam06346
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs) ...
156-177 2.80e-03

Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues.


Pssm-ID: 461881 [Multi-domain]  Cd Length: 157  Bit Score: 38.70  E-value: 2.80e-03
                          10        20
                  ....*....|....*....|...
gi 1337314231 156 PGDIPPAPPLP-SAVIPAPPELP 177
Cdd:pfam06346  30 GGGPPPPPPLPgSAAIPPPPPLP 52
Drf_FH1 pfam06346
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs) ...
156-177 3.58e-03

Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues.


Pssm-ID: 461881 [Multi-domain]  Cd Length: 157  Bit Score: 38.31  E-value: 3.58e-03
                          10        20
                  ....*....|....*....|....*
gi 1337314231 156 PG--DIPPAPPLP-SAVIPAPPELP 177
Cdd:pfam06346  52 PGgtSIPPPPPLPgAASIPPPPPLP 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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