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Conserved domains on  [gi|1333176734|ref|XP_023519354|]
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small glutamine-rich tetratricopeptide repeat-containing protein beta [Cucurbita pepo subsp. pepo]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11554692)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
123-226 6.83e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.96  E-value: 6.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 123 EALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGD 202
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP--DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84

                          90       100
                  ....*....|....*....|....
gi 1333176734 203 VFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:COG0457    85 ALQALGRYEEALEDYDKALELDPD 108
TRX_Fd_family cd02980
Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX ...
 38-105 1.50e-14

Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.


:

Pssm-ID: 239278 [Multi-domain]  Cd Length: 77  Bit Score: 66.50  E-value: 1.50e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333176734  38 IRVCTNRTCRRQGSFQTLETLSALAPP-----TITVNPSGCLGKCGAGPNVAVLPDGFVVGHCaTPARAAEVI 105
Cdd:cd02980     3 ILVCTGTACGLRGAEELLEALEKELGIrggdgRVTVERVGCLGACGLAPVVVVYPDGVWYGRV-TPEDVEEIV 74
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
123-226 6.83e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.96  E-value: 6.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 123 EALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGD 202
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP--DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84

                          90       100
                  ....*....|....*....|....
gi 1333176734 203 VFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:COG0457    85 ALQALGRYEEALEDYDKALELDPD 108
TRX_Fd_family cd02980
Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX ...
 38-105 1.50e-14

Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.


Pssm-ID: 239278 [Multi-domain]  Cd Length: 77  Bit Score: 66.50  E-value: 1.50e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333176734  38 IRVCTNRTCRRQGSFQTLETLSALAPP-----TITVNPSGCLGKCGAGPNVAVLPDGFVVGHCaTPARAAEVI 105
Cdd:cd02980     3 ILVCTGTACGLRGAEELLEALEKELGIrggdgRVTVERVGCLGACGLAPVVVVYPDGVWYGRV-TPEDVEEIV 74
COG3411 COG3411
2Fe-2S ferredoxin [Energy production and conversion]; 2Fe-2S ferredoxin is part of the Pathway ...
 38-105 8.61e-11

2Fe-2S ferredoxin [Energy production and conversion]; 2Fe-2S ferredoxin is part of the Pathway/BioSystem: 2Fe2S


Pssm-ID: 442637  Cd Length: 96  Bit Score: 57.21  E-value: 8.61e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333176734  38 IRVCTNrTCRRQGSFQTLETL-SALA----PPTITVNPSGCLGKCGAGPNVAVLPDGFVVGHCaTPARAAEVI 105
Cdd:COG3411     8 VLVCTG-SCGAAGAEEVLDALkEELKerglDGDVRVTKTGCLGRCEQGPVVVVYPEGVWYGNV-TPEDVPEIV 78
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 137-244 6.28e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.32  E-value: 6.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 137 DGNFSQADLLLSKAIELKP-CGGIhiiFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEm 215
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPnNAEL---YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK- 90

                          90       100       110
                  ....*....|....*....|....*....|
gi 1333176734 216 sysTALEIDPSIRRSKS-FKARVAKLQEKL 244
Cdd:PLN03088   91 ---AALEKGASLAPGDSrFTKLIKECDEKI 117
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 116-225 2.84e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 44.97  E-value: 2.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 116 LGVSKSLEALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPE 195
Cdd:TIGR00990 323 LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400

                          90       100       110
                  ....*....|....*....|....*....|
gi 1333176734 196 AYICQGDVFLSMDHFDSAEMSYSTALEIDP 225
Cdd:TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 194-226 1.47e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 1.47e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1333176734  194 PEAYICQGDVFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
2Fe-2S_thioredx pfam01257
Thioredoxin-like [2Fe-2S] ferredoxin;
38-108 5.51e-03

Thioredoxin-like [2Fe-2S] ferredoxin;


Pssm-ID: 460139  Cd Length: 145  Bit Score: 36.30  E-value: 5.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734  38 IRVCTNRTCRRQGSFQTLETL-SALAP----PT----ITVNPSGCLGKCGAGPnvAVLPDGFVVGHCaTPARAAEVIMQL 108
Cdd:pfam01257  68 IQVCTGTPCHLRGSDEILEALeKKLGIkpgeTTpdgkFTLEEVECLGACDNAP--VMQINDDYYGDL-TPEKVDEILEEL 144
TPR_12 pfam13424
Tetratricopeptide repeat;
169-226 8.89e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 34.29  E-value: 8.89e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1333176734 169 VRLALGNHAGALEDANEALRVA-----PRYPEAYICQ---GDVFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:pfam13424  12 VLRRLGRYDEALELLEKALEIArrllgPDHPLTATTLlnlGRLYLELGRYEEALELLERALALAEK 77
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
123-226 6.83e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.96  E-value: 6.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 123 EALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGD 202
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP--DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84

                          90       100
                  ....*....|....*....|....
gi 1333176734 203 VFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:COG0457    85 ALQALGRYEEALEDYDKALELDPD 108
TRX_Fd_family cd02980
Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX ...
 38-105 1.50e-14

Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.


Pssm-ID: 239278 [Multi-domain]  Cd Length: 77  Bit Score: 66.50  E-value: 1.50e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333176734  38 IRVCTNRTCRRQGSFQTLETLSALAPP-----TITVNPSGCLGKCGAGPNVAVLPDGFVVGHCaTPARAAEVI 105
Cdd:cd02980     3 ILVCTGTACGLRGAEELLEALEKELGIrggdgRVTVERVGCLGACGLAPVVVVYPDGVWYGRV-TPEDVEEIV 74
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
123-243 2.71e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 2.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 123 EALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGD 202
Cdd:COG0457    41 DAEALYNLGLAYLRLGRYEEALADYEQALELDP--DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGL 118

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1333176734 203 VFLSMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEK 243
Cdd:COG0457   119 ALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
123-226 3.39e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.78  E-value: 3.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 123 EALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGD 202
Cdd:COG4785    72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDP--DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149

                          90       100
                  ....*....|....*....|....
gi 1333176734 203 VFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:COG4785   150 ALYYLGRYELAIADLEKALELDPN 173
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 124-225 2.55e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.82  E-value: 2.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 124 ALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDV 203
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDP--DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100
                  ....*....|....*....|..
gi 1333176734 204 FLSMDHFDSAEMSYSTALEIDP 225
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDP 103
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 122-225 6.35e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.20  E-value: 6.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 122 LEALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQG 201
Cdd:COG5010    52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDP--NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLA 129

                          90       100
                  ....*....|....*....|....
gi 1333176734 202 DVFLSMDHFDSAEMSYSTALEIDP 225
Cdd:COG5010   130 ALLLSLGQDDEAKAALQRALGTSP 153
COG3411 COG3411
2Fe-2S ferredoxin [Energy production and conversion]; 2Fe-2S ferredoxin is part of the Pathway ...
 38-105 8.61e-11

2Fe-2S ferredoxin [Energy production and conversion]; 2Fe-2S ferredoxin is part of the Pathway/BioSystem: 2Fe2S


Pssm-ID: 442637  Cd Length: 96  Bit Score: 57.21  E-value: 8.61e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333176734  38 IRVCTNrTCRRQGSFQTLETL-SALA----PPTITVNPSGCLGKCGAGPNVAVLPDGFVVGHCaTPARAAEVI 105
Cdd:COG3411     8 VLVCTG-SCGAAGAEEVLDALkEELKerglDGDVRVTKTGCLGRCEQGPVVVVYPEGVWYGNV-TPEDVPEIV 78
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
124-222 5.90e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.71  E-value: 5.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 124 ALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDV 203
Cdd:COG0457    76 AEALNNLGLALQALGRYEEALEDYDKALELDP--DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153

                          90
                  ....*....|....*....
gi 1333176734 204 FLSMDHFDSAEMSYSTALE 222
Cdd:COG0457   154 LEKLGRYEEALELLEKLEA 172
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 124-225 2.02e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 2.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 124 ALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDV 203
Cdd:COG4783    38 PEAFALLGEILLQLGDLDEAIVLLHEALELDP--DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115

                          90       100
                  ....*....|....*....|..
gi 1333176734 204 FLSMDHFDSAEMSYSTALEIDP 225
Cdd:COG4783   116 YRALGRPDEAIAALEKALELDP 137
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 123-226 6.22e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.77  E-value: 6.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 123 EALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGD 202
Cdd:COG3914   111 NAEALFNLGNLLLALGRLEEALAALRRALALNP--DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGN 188

                          90       100
                  ....*....|....*....|....
gi 1333176734 203 VFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:COG3914   189 ALQDLGRLEEAIAAYRRALELDPD 212
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
136-229 1.86e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.55  E-value: 1.86e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 136 EDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEdANEALRVAPRYPEAYICQGDVFLSMDHFDSAEM 215
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDP--DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|....
gi 1333176734 216 SYSTALEIDPSIRR 229
Cdd:COG3063    81 YLERALELDPSALR 94
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
169-250 1.95e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.55  E-value: 1.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 169 VRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEmSYSTALEIDPSIRRSKSFKARVAKLQEKLNAVR 248
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                  ..
gi 1333176734 249 TQ 250
Cdd:COG3063    80 AY 81
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 168-248 6.69e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 6.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 168 IVRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEKLNAV 247
Cdd:COG5010    62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141


                  .
gi 1333176734 248 R 248
Cdd:COG5010   142 K 142
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 126-240 2.13e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.46  E-value: 2.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 126 ALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFL 205
Cdd:COG4235    19 GWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1333176734 206 SMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKL 240
Cdd:COG4235    97 QQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 126-245 2.23e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 2.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 126 ALWKRAECEVEDGNFSQADLLLSKAIELKPcGGIHIIFKdRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFL 205
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGP-ENAHAYCE-LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1333176734 206 SMDHFDSAEMSYSTALEIDPsirRSKSFKARVAKLQEKLN 245
Cdd:COG2956   190 EQGDYEEAIAALERALEQDP---DYLPALPRLAELYEKLG 226
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 169-243 9.51e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.92  E-value: 9.51e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1333176734 169 VRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEK 243
Cdd:COG4235    26 AYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 123-245 1.03e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 1.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 123 EALALWKRAECEVEDGNFSQADLLLSKAIELKP-CGGIHIIfkdRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQG 201
Cdd:COG2956   143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPdCARALLL---LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1333176734 202 DVFLSMDHFDSAEMSYSTALEIDPSIrrskSFKARVAKLQEKLN 245
Cdd:COG2956   220 ELYEKLGDPEEALELLRKALELDPSD----DLLLALADLLERKE 259
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 123-246 1.83e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 1.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 123 EALALWKRAECEVEDGNFSQADLLLSKAIELKPcggihiiFKDRSIVRLA-----LGNHAGALEDANEALRVAPRYPEAY 197
Cdd:COG2956    75 RAEALLELAQDYLKAGLLDRAEELLEKLLELDP-------DDAEALRLLAeiyeqEGDWEKAIEVLERLLKLGPENAHAY 147

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1333176734 198 ICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEKLNA 246
Cdd:COG2956   148 CELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 165-226 4.49e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 4.49e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1333176734 165 DRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD 70
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 137-244 6.28e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.32  E-value: 6.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 137 DGNFSQADLLLSKAIELKP-CGGIhiiFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEm 215
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPnNAEL---YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK- 90

                          90       100       110
                  ....*....|....*....|....*....|
gi 1333176734 216 sysTALEIDPSIRRSKS-FKARVAKLQEKL 244
Cdd:PLN03088   91 ---AALEKGASLAPGDSrFTKLIKECDEKI 117
NuoE COG1905
NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) [Energy production and conversion]; ...
 38-105 1.34e-05

NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 24 kD subunit (chain E) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441509  Cd Length: 159  Bit Score: 43.98  E-value: 1.34e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1333176734  38 IRVCTNRTCRRQGSFQTLETLSAL---------APPTITVNPSGCLGKCGAGPNVAVlpDGFVVGHcATPARAAEVI 105
Cdd:COG1905    81 IRVCTGTACHLRGAEELLEALEEKlgikpgettADGKFTLEEVECLGACGLAPVMMV--NDDVYGR-LTPEKVDEIL 154
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 116-225 2.84e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 44.97  E-value: 2.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 116 LGVSKSLEALALWKRAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPE 195
Cdd:TIGR00990 323 LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400

                          90       100       110
                  ....*....|....*....|....*....|
gi 1333176734 196 AYICQGDVFLSMDHFDSAEMSYSTALEIDP 225
Cdd:TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430
TRX_Fd_NuoE cd03064
TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E ...
 38-108 3.32e-05

TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] cluster and also binds the NADH substrate and FMN.


Pssm-ID: 239362 [Multi-domain]  Cd Length: 80  Bit Score: 41.35  E-value: 3.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734  38 IRVCTNRTCRRQGSFQTLETLSAL---------APPTITVNPSGCLGKCGAGPNVAVlpDGFVVGHcATPARAAEVIMQL 108
Cdd:cd03064     4 IRVCTGTACHLRGAEALLEALEKKlgikpgettPDGRFTLEEVECLGACDLAPVMMI--NDDVYGR-LTPEKVDAILEAL 80
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 171-225 3.43e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.60  E-value: 3.43e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1333176734 171 LALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDP 225
Cdd:COG3914    89 QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNP 143
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 111-225 3.56e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 44.59  E-value: 3.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 111 GVSDSLGVSKSLE--ALALWKRAECEVEDGNFSQADLLLSKAIELKPCG-GIHIIFKDRSIVRLALGNHAGALEDANEAL 187
Cdd:TIGR00990 279 GLEDSNELDEETGngQLQLGLKSPESKADESYEEAARAFEKALDLGKLGeKEAIALNLRGTFKCLKGKHLEALADLSKSI 358

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1333176734 188 RVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDP 225
Cdd:TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 120-226 1.38e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 1.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 120 KSLEA-LALwkrAECEVEDGNFSQADLLLSKAIELKPcgGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYI 198
Cdd:TIGR02917 157 RSLYAkLGL---AQLALAENRFDEARALIDEVLTADP--GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231

                          90       100
                  ....*....|....*....|....*...
gi 1333176734 199 CQGDVFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKAPN 259
TRX_Fd_NuoE_W_FDH_beta cd03082
TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E ...
 38-105 1.47e-04

TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependent oxidation of formate.


Pssm-ID: 239380 [Multi-domain]  Cd Length: 72  Bit Score: 39.31  E-value: 1.47e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333176734  38 IRVCTNRTCRRQGSFQTLETLSA-LAPPTITVNPSGCLGKCGAGPNVavlpdgfVVGHC----ATPARAAEVI 105
Cdd:cd03082     4 VRVCDSLSCAMAGAEELLAALEAgLGPEGVRVVRAPCVGRCERAPAA-------LVGQRpvdgATPAAVAAAV 69
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 171-225 2.45e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 2.45e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1333176734 171 LALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDP 225
Cdd:COG2956    19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP 73
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 124-246 3.91e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 3.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 124 ALALwkrAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSivRLALGNHAGALEDANEALRVAPRYPEAYICQGDV 203
Cdd:TIGR02917 570 ALAL---AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRA--QLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1333176734 204 FLSMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEKLNA 246
Cdd:TIGR02917 645 YAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 179-225 7.80e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 7.80e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1333176734 179 ALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDP 225
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP 48
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 124-225 1.40e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.94  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 124 ALALWKRAECEVEDGNFSQADLLLSKAIELKPcggihiifkDRSIVRLALGNHAGALEDANEALRV-------APRYPEA 196
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDP---------ETVEAHLALGNLYRRRGEYDRAIRIhqkllerDPDRAEA 78

                          90       100
                  ....*....|....*....|....*....
gi 1333176734 197 YICQGDVFLSMDHFDSAEMSYSTALEIDP 225
Cdd:COG2956    79 LLELAQDYLKAGLLDRAEELLEKLLELDP 107
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 194-226 1.47e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 1.47e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1333176734  194 PEAYICQGDVFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
130-203 3.38e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 37.59  E-value: 3.38e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1333176734 130 RAECEVEDGNFSQADLLLSKAIELKPCGGIhiIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEA----YICQGDV 203
Cdd:COG4785   113 RGLAYLLLGDYDAALEDFDRALELDPDYAY--AYLNRGIALYYLGRYELAIADLEKALELDPNDPERalwlYLAERKL 188
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 123-226 4.34e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.14  E-value: 4.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734 123 EALALwkRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFkdRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGD 202
Cdd:TIGR02917 194 DALLL--KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLA--LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL 269

                          90       100
                  ....*....|....*....|....
gi 1333176734 203 VFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:TIGR02917 270 VDFQKKNYEDARETLQDALKSAPE 293
2Fe-2S_thioredx pfam01257
Thioredoxin-like [2Fe-2S] ferredoxin;
38-108 5.51e-03

Thioredoxin-like [2Fe-2S] ferredoxin;


Pssm-ID: 460139  Cd Length: 145  Bit Score: 36.30  E-value: 5.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333176734  38 IRVCTNRTCRRQGSFQTLETL-SALAP----PT----ITVNPSGCLGKCGAGPnvAVLPDGFVVGHCaTPARAAEVIMQL 108
Cdd:pfam01257  68 IQVCTGTPCHLRGSDEILEALeKKLGIkpgeTTpdgkFTLEEVECLGACDNAP--VMQINDDYYGDL-TPEKVDEILEEL 144
TPR_12 pfam13424
Tetratricopeptide repeat;
169-226 8.89e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 34.29  E-value: 8.89e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1333176734 169 VRLALGNHAGALEDANEALRVA-----PRYPEAYICQ---GDVFLSMDHFDSAEMSYSTALEIDPS 226
Cdd:pfam13424  12 VLRRLGRYDEALELLEKALEIArrllgPDHPLTATTLlnlGRLYLELGRYEEALELLERALALAEK 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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