|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
134-522 |
4.57e-109 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 344.53 E-value: 4.57e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 134 ISSALSLCCSQRNLRGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCWEMTDACQVFDEMPVRNVVSWTAMIAGFAQEWQV 213
Cdd:PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRC 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 214 DMCLELFQQMKrMALRPNEFTFATILSACTGSGALGVGRSLHCQTFKMGFDSHVHIANALISMYCKCGALNFAVYLFEAM 293
Cdd:PLN03077 472 FEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 294 EvKDTVSWNSMIAGYAQHGLSLQAIDLFEAMRKQQqVEADGITFLGVLSSCRHGGLVEEGRYYFNLM-VELSLKPELDHY 372
Cdd:PLN03077 551 E-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGLEYFHSMeEKYSITPNLKHY 628
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 373 SCVIDLLGRAGLLKEAQNFIEKMPISPNSIVWGSLLSACRLHGNVWIGLKAAESRLLLQPDCASTHLQLANLYARAGYLD 452
Cdd:PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 453 DAARLRKMMKDKGLKTSPGYSWIEIQNKVYRFKAEDKSNPVMIEIFGVMDGMVNHMRSVGCVPEVDDELE 522
Cdd:PLN03077 709 EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD 778
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
195-242 |
7.43e-12 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 60.07 E-value: 7.43e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1333139595 195 RNVVSWTAMIAGFAQEWQVDMCLELFQQMKRMALRPNEFTFATILSAC 242
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
363-456 |
4.97e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 39.59 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 363 LSLKPE-LDHYSCVIDLLGRAGLLKEAQNFIEK-MPISPNSI-VWGSLLSACRLHGNVWIGLKAAESRLLLQPDCASTHL 439
Cdd:COG3914 105 LALNPDnAEALFNLGNLLLALGRLEEALAALRRaLALNPDFAeAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184
|
90
....*....|....*..
gi 1333139595 440 QLANLYARAGYLDDAAR 456
Cdd:COG3914 185 NLGNALQDLGRLEEAIA 201
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
299-327 |
7.02e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 34.35 E-value: 7.02e-03
10 20
....*....|....*....|....*....
gi 1333139595 299 VSWNSMIAGYAQHGLSLQAIDLFEAMRKQ 327
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKER 29
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
134-522 |
4.57e-109 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 344.53 E-value: 4.57e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 134 ISSALSLCCSQRNLRGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCWEMTDACQVFDEMPVRNVVSWTAMIAGFAQEWQV 213
Cdd:PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRC 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 214 DMCLELFQQMKrMALRPNEFTFATILSACTGSGALGVGRSLHCQTFKMGFDSHVHIANALISMYCKCGALNFAVYLFEAM 293
Cdd:PLN03077 472 FEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 294 EvKDTVSWNSMIAGYAQHGLSLQAIDLFEAMRKQQqVEADGITFLGVLSSCRHGGLVEEGRYYFNLM-VELSLKPELDHY 372
Cdd:PLN03077 551 E-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGLEYFHSMeEKYSITPNLKHY 628
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 373 SCVIDLLGRAGLLKEAQNFIEKMPISPNSIVWGSLLSACRLHGNVWIGLKAAESRLLLQPDCASTHLQLANLYARAGYLD 452
Cdd:PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 453 DAARLRKMMKDKGLKTSPGYSWIEIQNKVYRFKAEDKSNPVMIEIFGVMDGMVNHMRSVGCVPEVDDELE 522
Cdd:PLN03077 709 EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD 778
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
148-526 |
1.18e-90 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 292.16 E-value: 1.18e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 148 RGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCWEMTDACQVFDEMPVRNVVSWTAMIAGFAQEWQVDMCLELFQQMKRMA 227
Cdd:PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 228 LRPNEFTFATILSACTGSGALGVGRSLHCQTFKMGFDSHVHIANALISMYCKCGALNFAVYLFEAMEVKDTVSWNSMIAG 307
Cdd:PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 308 YAQHGLSLQAIDLFEAMrKQQQVEADGITFLGVLSSCRHGGLVEEGRYYFNLMVE-LSLKPELDHYSCVIDLLGRAGLLK 386
Cdd:PLN03081 401 YGNHGRGTKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEnHRIKPRAMHYACMIELLGREGLLD 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 387 EAQNFIEKMPISPNSIVWGSLLSACRLHGNVWIGLKAAESRLLLQPDCASTHLQLANLYARAGYLDDAARLRKMMKDKGL 466
Cdd:PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 467 KTSPGYSWIEIQNKVYRFKAEDKSNPVMIEIFGVMDGMVNHMRSVGCVPEvddelENALL 526
Cdd:PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE-----ENELL 614
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
138-464 |
1.29e-40 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 156.93 E-value: 1.29e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 138 LSLCCSQRNLRGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCWEMTDACQVFDEMPVRNVVSWTAMIAGFAQEWQVDMCL 217
Cdd:PLN03077 93 FRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 218 ELFQQMKRMALRPNEFTFATILSACTGSGALGVGRSLHCQTFKMGFDSHVHIANALISMYCKCGALNFAVYLFEAMEVKD 297
Cdd:PLN03077 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 298 TVSWNSMIAGYAQHGLSLQAIDLFEAMRkQQQVEADGITFLGVLSSCRHGGLVEEGRYYFNLMVELSLKPELDHYSCVID 377
Cdd:PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 378 LLGRAGLLKEAQNFIEKMP----------------------------------ISPNSIVWGSLLSACRLHGNVWIGLK- 422
Cdd:PLN03077 332 MYLSLGSWGEAEKVFSRMEtkdavswtamisgyeknglpdkaletyalmeqdnVSPDEITIASVLSACACLGDLDVGVKl 411
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1333139595 423 ---AAESRLLLQPDCASThlqLANLYARAGYLDDAARLRKMMKDK 464
Cdd:PLN03077 412 helAERKGLISYVVVANA---LIEMYSKCKCIDKALEVFHNIPEK 453
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
138-467 |
4.50e-12 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 68.75 E-value: 4.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 138 LSLCCSQRNLRGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCWEMTDACQVFDEMPVR----NVVSWTAMIAGFAQEWQV 213
Cdd:PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAgveaNVHTFGALIDGCARAGQV 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 214 DMCLELFQQMKRMALRPNEFTFATILSACTGSGAlgVGRSlhcqtfkmgFDshvhianALISMyckcGAlnfavylfEAM 293
Cdd:PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA--VDRA---------FD-------VLAEM----KA--------ETH 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 294 EVK-DTVSWNSMIAGYAQHGLSLQAIDLFEAMRKqQQVEADGITFLGVLSSCRHGGLVEEGRYYFNLMVELSLKPELDHY 372
Cdd:PLN03218 574 PIDpDHITVGALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 373 SCVIDLLGRAGLLKEAQNFIEKMPIS---PNSIVWGSLLSACRLHGN------VWIGLKAAEsrllLQPDCAS-----TH 438
Cdd:PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQgikLGTVSYSSLMGACSNAKNwkkaleLYEDIKSIK----LRPTVSTmnaliTA 728
|
330 340 350
....*....|....*....|....*....|
gi 1333139595 439 LQLANLYARA-GYLDDaarlrkmMKDKGLK 467
Cdd:PLN03218 729 LCEGNQLPKAlEVLSE-------MKRLGLC 751
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
195-242 |
7.43e-12 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 60.07 E-value: 7.43e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1333139595 195 RNVVSWTAMIAGFAQEWQVDMCLELFQQMKRMALRPNEFTFATILSAC 242
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
414-476 |
2.02e-10 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 56.40 E-value: 2.02e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1333139595 414 HGNVWIGLKAAESRLLLQPDCASTHLQLANLYARAGYLDDAARLRKMMKDKGLKTSPGYSWIE 476
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
296-344 |
8.46e-06 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 43.12 E-value: 8.46e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1333139595 296 KDTVSWNSMIAGYAQHGLSLQAIDLFEAMRKqQQVEADGITFLGVLSSC 344
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKK-RGVKPNVYTYTILINGL 48
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
299-326 |
3.64e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 40.53 E-value: 3.64e-05
10 20
....*....|....*....|....*...
gi 1333139595 299 VSWNSMIAGYAQHGLSLQAIDLFEAMRK 326
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKE 28
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
198-226 |
9.52e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 39.37 E-value: 9.52e-05
10 20
....*....|....*....|....*....
gi 1333139595 198 VSWTAMIAGFAQEWQVDMCLELFQQMKRM 226
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEK 29
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
174-304 |
2.35e-04 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 44.10 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 174 SLYGKC-----WEmtDACQVFDE---MPVRNVVS-WTAMIAGFAQEWQVDMCLELFQQMKRMALRPNEFTFATILSACTG 244
Cdd:PLN03218 689 SLMGACsnaknWK--KALELYEDiksIKLRPTVStMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1333139595 245 SGALGVGRSLHCQTFKMGFDSHVHIANALISM----YCKCGALNFAVYLFEAMEVKDTVSWNSM 304
Cdd:PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLclrrFEKACALGEPVVSFDSGRPQIENKWTSW 830
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
188-244 |
4.84e-04 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 38.49 E-value: 4.84e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1333139595 188 VFDEMPVR----NVVSWTAMIAGFAQEWQVDMCLELFQQMKRMALRPNEFTFATILSACTG 244
Cdd:pfam13812 2 ILREMVRDgiqlNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
271-310 |
1.25e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.96 E-value: 1.25e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1333139595 271 NALISMYCKCGALNFAVYLFEAMEVK----DTVSWNSMIAGYAQ 310
Cdd:pfam13041 7 NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
332-470 |
2.61e-03 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 40.63 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 332 ADGITFLGVLSSCRHGGLVEEGRYYFNLMVELSLKPELDHYSCVIDLLGRAGLLKE---AQNFIEKMPISPNSIVWGSLL 408
Cdd:PLN03218 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKafgAYGIMRSKNVKPDRVVFNALI 549
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1333139595 409 SACRLHG------NVWIGLKaAESRLLLqPDcastHLQLANLY---ARAGYLDDAARLRKMMKDKGLKTSP 470
Cdd:PLN03218 550 SACGQSGavdrafDVLAEMK-AETHPID-PD----HITVGALMkacANAGQVDRAKEVYQMIHEYNIKGTP 614
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
363-456 |
4.97e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 39.59 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333139595 363 LSLKPE-LDHYSCVIDLLGRAGLLKEAQNFIEK-MPISPNSI-VWGSLLSACRLHGNVWIGLKAAESRLLLQPDCASTHL 439
Cdd:COG3914 105 LALNPDnAEALFNLGNLLLALGRLEEALAALRRaLALNPDFAeAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184
|
90
....*....|....*..
gi 1333139595 440 QLANLYARAGYLDDAAR 456
Cdd:COG3914 185 NLGNALQDLGRLEEAIA 201
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
299-327 |
7.02e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 34.35 E-value: 7.02e-03
10 20
....*....|....*....|....*....
gi 1333139595 299 VSWNSMIAGYAQHGLSLQAIDLFEAMRKQ 327
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKER 29
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
171-209 |
7.44e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 34.65 E-value: 7.44e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1333139595 171 SLVSLYGKCWEMTDACQVFDEMPVR----NVVSWTAMIAGFAQ 209
Cdd:pfam13041 8 TLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
|
|
| |
