NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1331215854|ref|YP_009454604|]
View 

NADH dehydrogenase subunit 3 (mitochondrion) [Caryanda elegans]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 6.08e-43

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 136.44  E-value: 6.08e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   3 ILFTSISISFIVPMIVMLLATTLSKKLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1331215854  83 TSNIIVWMTSSMFFIIVLLGGLYYEWNQGALKW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 6.08e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 136.44  E-value: 6.08e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   3 ILFTSISISFIVPMIVMLLATTLSKKLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1331215854  83 TSNIIVWMTSSMFFIIVLLGGLYYEWNQGALKW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 1.24e-26

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 94.41  E-value: 1.24e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKtSNIIVWMTSSMFFIIVLLGGLYYEWNQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 1331215854 112 ALK 114
Cdd:pfam00507  92 ALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-115 2.12e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 87.10  E-value: 2.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLATTLSKKL---INDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPI 77
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLgpkRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1331215854  78 VIIMKTSNIIVWMtSSMFFIIVLLGGLYYEWNQGALKW 115
Cdd:COG0838    81 AVVFRELGWFGLI-EMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 6.08e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 136.44  E-value: 6.08e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   3 ILFTSISISFIVPMIVMLLATTLSKKLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMK 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1331215854  83 TSNIIVWMTSSMFFIIVLLGGLYYEWNQGALKW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 2.58e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 134.99  E-value: 2.58e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLATTLSKKLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1331215854  81 MKTSNIIVWMTSSMFFIIVLLGGLYYEWNQGALKWAE 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 1.32e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 125.49  E-value: 1.32e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLATTLSKKLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1331215854  81 MKTSNIIVWMTSSMFFIIVLLGGLYYEWNQGALKWAE 117
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 3.58e-33

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 111.87  E-value: 3.58e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLATTLSKKLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1331215854  81 MKTSNIIVWMTSSMFFIIVLLGGLYYEWNQGALKWA 116
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-117 3.25e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 109.26  E-value: 3.25e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLAttlskKLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00106    4 MLTLLTNTLLASLLVLIAFWLP-----QLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1331215854  81 MKTSNIIVWMTSSMFFIIVLLGGLYYEWNQGALKWAE 117
Cdd:MTH00106   79 SQTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 4-116 7.58e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 100.73  E-value: 7.58e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   4 LFTSISISFIVPMIVMLLATTLSKKLiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKT 83
Cdd:MTH00113    3 LISMLTISLALSTILTTLNFWLTQTK-PDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINL 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1331215854  84 SNIIVWMTSSMFFIIVLLGGLYYEWNQGALKWA 116
Cdd:MTH00113   82 TTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 16-117 9.51e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 100.38  E-value: 9.51e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854  16 MIVMLLATTLSKKLI----------NDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSN 85
Cdd:MTH00136    5 TTILTITIALSLILAivsfwlpqmtPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPS 84

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1331215854  86 IIVWMTSSMFFIIVLLGGLYYEWNQGALKWAE 117
Cdd:MTH00136   85 PLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-117 2.96e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 99.30  E-value: 2.96e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854  16 MIVMLLATTLSKKLIN----------DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPI---VIIMK 82
Cdd:MTH00069    3 MLMLLISTILSLILITisfwlplnnpDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNT 82

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1331215854  83 TSNIIVWmtsSMFFIIVLLGGLYYEWNQGALKWAE 117
Cdd:MTH00069   83 PTNTLFW---STLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 8.34e-28

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 98.13  E-value: 8.34e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLATTLSKKLInDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1331215854  81 MKTSNIIVWMTSSMFFIIVLLGGLYYEWNQGALKWAE 117
Cdd:MTH00042   80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 1.24e-26

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 94.41  E-value: 1.24e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKtSNIIVWMTSSMFFIIVLLGGLYYEWNQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 1331215854 112 ALK 114
Cdd:pfam00507  92 ALE 94
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 1.18e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 92.65  E-value: 1.18e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLATTLSKkLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPK-VNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1331215854  81 MKTSNiiVWMTSSMFFIIVLLGGLYYEWNQGALKW 115
Cdd:MTH00203   80 NQLSS--LSLLLAFLFLILLTLGLIYEWLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-115 2.12e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 87.10  E-value: 2.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLATTLSKKL---INDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPI 77
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLgpkRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1331215854  78 VIIMKTSNIIVWMtSSMFFIIVLLGGLYYEWNQGALKW 115
Cdd:COG0838    81 AVVFRELGWFGLI-EMLVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 17-116 4.30e-21

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 81.06  E-value: 4.30e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854  17 IVMLLATTLSKKLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILP-IVIIMKTSNIIVWmtSSMF 95
Cdd:PRK06602   23 ILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPwAVSFREIGWLGFV--EAMI 100

                          90       100
                  ....*....|....*....|.
gi 1331215854  96 FIIVLLGGLYYEWNQGALKWA 116
Cdd:PRK06602  101 FILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 4-115 6.27e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 72.79  E-value: 6.27e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   4 LFTSISISFIVPMIVMLLATTLSKKlINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKT 83
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGVK-QPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQ 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1331215854  84 SNIIVWMTSSMFFIIVLLgGLYYEWNQGALKW 115
Cdd:MTH00018   82 IAPFGFWTMVGFLFILTL-GLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-115 9.22e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 70.12  E-value: 9.22e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLATTLSKKlINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00055    5 FLGIFILLLFSIGLSTVISGASYIVGVK-QPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1331215854  81 MKTSNIIVWMTSSMFFIIVLLgGLYYEWNQGALKW 115
Cdd:MTH00055   84 YNQIGLFGFWVMYLFLIILTI-GLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 5-115 3.54e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 66.11  E-value: 3.54e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   5 FTSISISFIVPMIVMLLATTLSKKLINDR--------EKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILP 76
Cdd:MTH00030    5 FKTIFFSTLLGVGIILLLVSISFTLGNSRigltkpdsEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFP 84

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1331215854  77 IVIIMKTSNIIVWMTSSMFFIIVLLgGLYYEWNQGALKW 115
Cdd:MTH00030   85 WSIVFNQLNLFSFWIVYTFLIVLAI-GLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-115 6.90e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 52.30  E-value: 6.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLIL--FTSISISFIVPMIVMLLATTLSKKLINDR---EKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALIL 75
Cdd:CHL00022    1 MFLLyeYDIFWAFLIISSLIPILAFLISGLLAPISkgpEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1331215854  76 PIVIIMKTSNIIVWMtSSMFFIIVLLGGLYYEWNQGALKW 115
Cdd:CHL00022   81 PWAMSFDVLGVSAFI-EALIFVLILIVGLVYAWRKGALEW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
1-115 7.29e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 50.05  E-value: 7.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVpmivmLLATTLSKKLIN---DREKSSPFECGFDP-KSSARMpfSLRFFLIAVIFLIFDVEIALILP 76
Cdd:PRK08489   15 VLLVLTFVAFFLTT-----RLARFISRKLAQkntEKLKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFP 87

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1331215854  77 IVIIMKTSNIIVwMTSSMFFIIVLLGGLYYEWNQGALKW 115
Cdd:PRK08489   88 WAVDFKLLGLFG-LIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
2-115 8.71e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 49.74  E-value: 8.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   2 LILFTSISISFIVPmIVMLLATTLSKKLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIM 81
Cdd:PRK07756   10 MIVLIFLLLGILLP-VVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY 88

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1331215854  82 KTSNIIVwMTSSMFFIIVLLGGLYYEWNQGALKW 115
Cdd:PRK07756   89 DKLGLFA-LIEMLIFVVMLLVGLAYAWKKKVLQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 2.68e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.57  E-value: 2.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLATTLSKKLiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVII 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1331215854  81 MKTSNIIVWMtssmfFIIVLLGGLYYEWNQGALKW 115
Cdd:MTH00092   80 DFSSLISFFM-----LMIFIFFGFYMEWWYGKLIW 109
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 32-115 1.22e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 41.20  E-value: 1.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854  32 DREKSSPFECGFDPKSSARMP--FSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIIVWMTSSMFFIIVLLGGLYyEWN 109
Cdd:PRK07928   34 NRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFMLTVFVAYAY-VWR 112


                  ....*.
gi 1331215854 110 QGALKW 115
Cdd:PRK07928  113 RGGLEW 118
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 1-115 7.92e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.11  E-value: 7.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854   1 MLILFTSISISFIVPMIVMLLATTL--SKKLINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIV 78
Cdd:MTH00060    1 MLVLLFVFFVFFLLFLVIYFFHSGLwnNKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1331215854  79 IimkTSNIIVWMTSSMFFIIVLLGGLYYEWNQGALKW 115
Cdd:MTH00060   81 F---QGLLFYNFWYYYFFLLLLFLGFVVELFSGYVRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-115 1.73e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 35.94  E-value: 1.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331215854  32 DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIVIIMKTSNIIVWMtSSMFFIIVLLGGLYYEWNQG 111
Cdd:PRK06432   60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFI-ETLIFLAMPLFAVYYAFKMG 138


                  ....
gi 1331215854 112 ALKW 115
Cdd:PRK06432  139 YMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH