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Conserved domains on  [gi|1329975753|gb|AUQ23458|]
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reticulon 4 receptor-like protein, partial [Guyanancistrus longispinis]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
53-251 7.09e-16

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.90  E-value: 7.09e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753  53 QRVFLQNNRITELRVGSFGFRT-QVLWLFSNNITWIEAgAFSELRDLEELDLGDNPhLRRLeGGAFRGLEKLQSLHMHRC 131
Cdd:COG4886   139 KELDLSNNQLTDLPEPLGNLTNlKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQ-ITDL-PEPLGNLTNLEELDLSGN 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 132 RLAALPHDIfHKLYSLQYLYLQENQLHFLQDdlFADLINLSQLFLHGNRIRTLSENVfrGLVNLDRLLLHDNRIRQVNRR 211
Cdd:COG4886   216 QLTDLPEPL-ANLTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPPLA--NLTNLKTLDLSNNQLTDLKLK 290

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1329975753 212 AFRDLGRLTMLFLFNNSLAELPGQAMRDVESIQFLRLNNN 251
Cdd:COG4886   291 ELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLL 330
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
53-251 7.09e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.90  E-value: 7.09e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753  53 QRVFLQNNRITELRVGSFGFRT-QVLWLFSNNITWIEAgAFSELRDLEELDLGDNPhLRRLeGGAFRGLEKLQSLHMHRC 131
Cdd:COG4886   139 KELDLSNNQLTDLPEPLGNLTNlKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQ-ITDL-PEPLGNLTNLEELDLSGN 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 132 RLAALPHDIfHKLYSLQYLYLQENQLHFLQDdlFADLINLSQLFLHGNRIRTLSENVfrGLVNLDRLLLHDNRIRQVNRR 211
Cdd:COG4886   216 QLTDLPEPL-ANLTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPPLA--NLTNLKTLDLSNNQLTDLKLK 290

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1329975753 212 AFRDLGRLTMLFLFNNSLAELPGQAMRDVESIQFLRLNNN 251
Cdd:COG4886   291 ELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLL 330
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 55-233 2.56e-11

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 61.73  E-value: 2.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753  55 VFLQNNRITELRVGSFGFRTQVLWLFSNNITWIEagAFSELRDLEELDLGDNpHLRRLEGgaFRGLEKLQSLHMHRCRLA 134
Cdd:cd21340     7 LYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIE--NLEFLTNLTHLYLQNN-QIEKIEN--LENLVNLKKLYLGGNRIS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 135 ALPHdiFHKLYSLQYLYLqENQ-------LHFLQDDLFADLINLSQLFLHGNRIRTLSEnvFRGLVNLDRLLLHDNRIRQ 207
Cdd:cd21340    82 VVEG--LENLTNLEELHI-ENQrlppgekLTFDPRSLAALSNSLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISD 156

                         170       180
                  ....*....|....*....|....*...
gi 1329975753 208 VNR--RAFRDLGRLTMLFLFNNSLAELP 233
Cdd:cd21340   157 LEEllDLLSSWPSLRELDLTGNPVCKKP 184
LRR_8 pfam13855
Leucine rich repeat;
146-205 5.70e-11

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 56.76  E-value: 5.70e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 146 SLQYLYLQENQLHFLQDDLFADLINLSQLFLHGNRIRTLSENVFRGLVNLDRLLLHDNRI 205
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 71-233 6.14e-03

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 37.93  E-value: 6.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753   71 GFRTQVLWlFSNNItwIEAGAFSELRDLEELDLGDNPHLRRLEGgAFRGLEKLQSLHMHRC-RLAALPHDIfhklySLQY 149
Cdd:PLN03210   635 GLRNIDLR-GSKNL--KEIPDLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCeNLEILPTGI-----NLKS 705

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753  150 LY-LQENQLHFLQddLFADL-INLSQLFLHGNRIRTLSENVfrGLVNLDRLLLHDNRIRQVNRRAFRDLGRLTM------ 221
Cdd:PLN03210   706 LYrLNLSGCSRLK--SFPDIsTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMlspslt 781

                          170
                   ....*....|....
gi 1329975753  222 -LFLFNN-SLAELP 233
Cdd:PLN03210   782 rLFLSDIpSLVELP 795
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
53-251 7.09e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.90  E-value: 7.09e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753  53 QRVFLQNNRITELRVGSFGFRT-QVLWLFSNNITWIEAgAFSELRDLEELDLGDNPhLRRLeGGAFRGLEKLQSLHMHRC 131
Cdd:COG4886   139 KELDLSNNQLTDLPEPLGNLTNlKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQ-ITDL-PEPLGNLTNLEELDLSGN 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 132 RLAALPHDIfHKLYSLQYLYLQENQLHFLQDdlFADLINLSQLFLHGNRIRTLSENVfrGLVNLDRLLLHDNRIRQVNRR 211
Cdd:COG4886   216 QLTDLPEPL-ANLTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPPLA--NLTNLKTLDLSNNQLTDLKLK 290

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1329975753 212 AFRDLGRLTMLFLFNNSLAELPGQAMRDVESIQFLRLNNN 251
Cdd:COG4886   291 ELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLL 330
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
77-251 1.08e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 64.57  E-value: 1.08e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753  77 LWLFSNNITWIEAGAFSELRDLEELDLGDNPHLRRLEGGAFRGLEKLQSLHMHRCRLaalphdiFHKLYSLQYLYLQENQ 156
Cdd:COG4886    52 LLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQ 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 157 LHFLQDDLfADLINLSQLFLHGNRIRTLSEnVFRGLVNLDRLLLHDNRIRQVNrRAFRDLGRLTMLFLFNNSLAELPgQA 236
Cdd:COG4886   125 LTDLPEEL-ANLTNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLTDLP-EELGNLTNLKELDLSNNQITDLP-EP 200

                         170
                  ....*....|....*
gi 1329975753 237 MRDVESIQFLRLNNN 251
Cdd:COG4886   201 LGNLTNLEELDLSGN 215
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 55-233 2.56e-11

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 61.73  E-value: 2.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753  55 VFLQNNRITELRVGSFGFRTQVLWLFSNNITWIEagAFSELRDLEELDLGDNpHLRRLEGgaFRGLEKLQSLHMHRCRLA 134
Cdd:cd21340     7 LYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIE--NLEFLTNLTHLYLQNN-QIEKIEN--LENLVNLKKLYLGGNRIS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 135 ALPHdiFHKLYSLQYLYLqENQ-------LHFLQDDLFADLINLSQLFLHGNRIRTLSEnvFRGLVNLDRLLLHDNRIRQ 207
Cdd:cd21340    82 VVEG--LENLTNLEELHI-ENQrlppgekLTFDPRSLAALSNSLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISD 156

                         170       180
                  ....*....|....*....|....*...
gi 1329975753 208 VNR--RAFRDLGRLTMLFLFNNSLAELP 233
Cdd:cd21340   157 LEEllDLLSSWPSLRELDLTGNPVCKKP 184
LRR_8 pfam13855
Leucine rich repeat;
146-205 5.70e-11

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 56.76  E-value: 5.70e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 146 SLQYLYLQENQLHFLQDDLFADLINLSQLFLHGNRIRTLSENVFRGLVNLDRLLLHDNRI 205
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
170-229 2.00e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 52.53  E-value: 2.00e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 170 NLSQLFLHGNRIRTLSENVFRGLVNLDRLLLHDNRIRQVNRRAFRDLGRLTMLFLFNNSL 229
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
122-181 1.34e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 50.22  E-value: 1.34e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 122 KLQSLHMHRCRLAALPHDIFHKLYSLQYLYLQENQLHFLQDDLFADLINLSQLFLHGNRI 181
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 120-208 1.04e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 51.33  E-value: 1.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 120 LEKLQSLHMHRCRLAALphDIFHKLYSLQYLYLQENQLHFLQDdlFADLINLSQLFLHGNRIRTLsENvFRGLVNLDRLL 199
Cdd:cd21340     1 LKRITHLYLNDKNITKI--DNLSLCKNLKVLYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKI-EN-LENLVNLKKLY 74


                  ....*....
gi 1329975753 200 LHDNRIRQV 208
Cdd:cd21340    75 LGGNRISVV 83
LRR_8 pfam13855
Leucine rich repeat;
81-133 3.25e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 46.36  E-value: 3.25e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1329975753  81 SNNITWIEAGAFSELRDLEELDLGDNpHLRRLEGGAFRGLEKLQSLHMHRCRL 133
Cdd:pfam13855  10 NNRLTSLDDGAFKGLSNLKVLDLSNN-LLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
53-250 3.55e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 50.70  E-value: 3.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753  53 QRVFLQNNRITELRVgSFGFRT--QVLWLFSNNITWIEAgAFSELRDLEELDLGDNPhLRRLEggAFRGLEKLQSLHMHR 130
Cdd:COG4886   185 KELDLSNNQITDLPE-PLGNLTnlEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQ-LTDLP--ELGNLTNLEELDLSN 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 131 CRLAALPHdiFHKLYSLQYLYLQENQLHFLQddlFADLINLSQLFLHGNRIRTLSENVFRGLVNLDRLLLHDNRIRQVNR 210
Cdd:COG4886   260 NQLTDLPP--LANLTNLKTLDLSNNQLTDLK---LKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLL 334

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1329975753 211 RAFRDLGRLTMLFLFNNSLAELPGQAMRDVESIQFLRLNN 250
Cdd:COG4886   335 VTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGL 374
LRR_8 pfam13855
Leucine rich repeat;
194-252 1.19e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 44.82  E-value: 1.19e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1329975753 194 NLDRLLLHDNRIRQVNRRAFRDLGRLTMLFLFNNSLAELPGQAMRDVESIQFLRLNNNP 252
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
LRR_8 pfam13855
Leucine rich repeat;
53-107 2.84e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 40.97  E-value: 2.84e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1329975753  53 QRVFLQNNRITELRVGSFGFRTQVLWLF--SNNITWIEAGAFSELRDLEELDLGDNP 107
Cdd:pfam13855   4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDlsNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 144-234 4.06e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 40.54  E-value: 4.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 144 LYSLQYLYLQENQLHFLQDdlFADLINLSQLFLHGNRIRTLsENvFRGLVNLDRLLLHDNRIRQVNRraFRDLGRLTMLF 223
Cdd:cd21340     1 LKRITHLYLNDKNITKIDN--LSLCKNLKVLYLYDNKITKI-EN-LEFLTNLTHLYLQNNQIEKIEN--LENLVNLKKLY 74

                          90
                  ....*....|.
gi 1329975753 224 LFNNSLAELPG 234
Cdd:cd21340    75 LGGNRISVVEG 85
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 74-252 2.54e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 38.88  E-value: 2.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753  74 TQVLWLFSNNITWIEAGA-FSELR---DLEELDLGDNPHLR-----RLEGGAFRGLEKLQSLHMHRCRL-AALPHDI--F 141
Cdd:cd00116    25 LQVLRLEGNTLGEEAAKAlASALRpqpSLKELCLSLNETGRiprglQSLLQGLTKGCGLQELDLSDNALgPDGCGVLesL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753 142 HKLYSLQYLYLQENQL-----HFLQDDLFADLINLSQLFLHGNRI-----RTLSEnVFRGLVNLDRLLLHDNRIR----Q 207
Cdd:cd00116   105 LRSSSLQELKLNNNGLgdrglRLLAKGLKDLPPALEKLVLGRNRLegascEALAK-ALRANRDLKELNLANNGIGdagiR 183

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1329975753 208 VNRRAFRDLGRLTMLFLFNNSLAELPGQAM----RDVESIQFLRLNNNP 252
Cdd:cd00116   184 ALAEGLKANCNLEVLDLNNNGLTDEGASALaetlASLKSLEVLNLGDNN 232
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 71-233 6.14e-03

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 37.93  E-value: 6.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753   71 GFRTQVLWlFSNNItwIEAGAFSELRDLEELDLGDNPHLRRLEGgAFRGLEKLQSLHMHRC-RLAALPHDIfhklySLQY 149
Cdd:PLN03210   635 GLRNIDLR-GSKNL--KEIPDLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCeNLEILPTGI-----NLKS 705

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1329975753  150 LY-LQENQLHFLQddLFADL-INLSQLFLHGNRIRTLSENVfrGLVNLDRLLLHDNRIRQVNRRAFRDLGRLTM------ 221
Cdd:PLN03210   706 LYrLNLSGCSRLK--SFPDIsTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMlspslt 781

                          170
                   ....*....|....
gi 1329975753  222 -LFLFNN-SLAELP 233
Cdd:PLN03210   782 rLFLSDIpSLVELP 795
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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