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Conserved domains on  [gi|13194478|gb|AAK13003|]
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cytochrome b, partial (mitochondrion) [Luciobarbus setivimensis]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-136 3.36e-107

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 309.66  E-value: 3.36e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    1 MASLRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 13194478   81 NMHANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWG 136
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-136 3.36e-107

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 309.66  E-value: 3.36e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    1 MASLRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 13194478   81 NMHANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWG 136
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-136 6.39e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 178.33  E-value: 6.39e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478   9 PLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 13194478  89 FFFLCIYMHIARGLYYGSY--LYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWG 130
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-136 2.91e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 163.32  E-value: 2.91e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    18 LVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGASFFFLCIYMH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 13194478    98 IARGLYYG--SYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWG 121
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-136 4.53e-48

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 158.41  E-value: 4.53e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478  22 PAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGASFFFLCIYMHIARG 101
Cdd:COG1290  31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 13194478 102 LYYGSylYKE----TWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:COG1290 111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWD 147
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-136 3.36e-107

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 309.66  E-value: 3.36e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    1 MASLRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 13194478   81 NMHANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWG 136
CYTB MTH00119
cytochrome b; Provisional
 4-136 2.54e-95

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 279.09  E-value: 2.54e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    4 LRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMH 83
Cdd:MTH00119   5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 13194478   84 ANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWG 137
CYTB MTH00100
cytochrome b; Provisional
 1-136 1.41e-94

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 277.29  E-value: 1.41e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    1 MASLRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 13194478   81 NMHANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWG 136
CYTB MTH00074
cytochrome b; Provisional
 1-136 3.59e-93

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 273.87  E-value: 3.59e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    1 MASLRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 13194478   81 NMHANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWG 137
CYTB MTH00191
cytochrome b; Provisional
 4-136 8.63e-92

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 269.86  E-value: 8.63e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    4 LRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 13194478   84 ANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWG 133
CYTB MTH00156
cytochrome b; Provisional
 11-136 1.63e-87

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 258.56  E-value: 1.63e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478   11 IKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGASFF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 13194478   91 FLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWG 126
CYTB MTH00145
cytochrome b; Provisional
 1-136 1.47e-86

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 256.76  E-value: 1.47e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    1 MASLRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 13194478   81 NMHANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWG 137
CYTB MTH00034
cytochrome b; Validated
 4-136 7.36e-84

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 250.01  E-value: 7.36e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    4 LRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 13194478   84 ANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWG 136
CYTB MTH00016
cytochrome b; Validated
 1-136 7.19e-81

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 242.28  E-value: 7.19e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    1 MASLRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00016   2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 13194478   81 NMHANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWG 137
CYTB MTH00224
cytochrome b; Provisional
 4-136 7.69e-69

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 211.70  E-value: 7.69e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    4 LRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 13194478   84 ANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWG 137
CYTB MTH00022
cytochrome b; Validated
 4-136 2.36e-67

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 208.02  E-value: 2.36e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    4 LRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 13194478   84 ANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWG 135
CYTB MTH00053
cytochrome b; Provisional
 3-136 2.55e-62

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 194.92  E-value: 2.55e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    3 SLRKTHPLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNM 82
Cdd:MTH00053   4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 13194478   83 HANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00053  84 HANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWG 137
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-136 6.39e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 178.33  E-value: 6.39e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478   9 PLIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 13194478  89 FFFLCIYMHIARGLYYGSY--LYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWG 130
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-136 2.91e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 163.32  E-value: 2.91e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    18 LVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGASFFFLCIYMH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 13194478    98 IARGLYYG--SYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWG 121
CYTB MTH00033
cytochrome b; Provisional
 4-136 2.22e-49

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 162.03  E-value: 2.22e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478    4 LRKTHPLIKIAN*aLVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMH 83
Cdd:MTH00033   3 LRKTGLLEPVND--IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 13194478   84 ANGASFFFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWG 133
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-136 4.53e-48

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 158.41  E-value: 4.53e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478  22 PAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGASFFFLCIYMHIARG 101
Cdd:COG1290  31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 13194478 102 LYYGSylYKE----TWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:COG1290 111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWD 147
CYTB MTH00086
cytochrome b; Provisional
 15-136 5.98e-42

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 142.00  E-value: 5.98e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478   15 N*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGASFFFLCI 94
Cdd:MTH00086   4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 13194478   95 YMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:MTH00086  84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWA 125
CYTB MTH00046
cytochrome b; Validated
 10-135 1.84e-27

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 103.91  E-value: 1.84e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478   10 LIKIAN*ALVDLPAPSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGASF 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 13194478   90 FFLCIYMHIARGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPW 135
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPW 126
PRK03735 PRK03735
cytochrome b6; Provisional
 33-135 1.43e-22

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 88.23  E-value: 1.43e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478   33 FGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGASFFFLCIYMHIARGLYYGSYLYKE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....*
gi 13194478  112 -TWNIGVVLLLLVMATAFVGYVLPW 135
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPW 148
petB CHL00070
cytochrome b6
 24-135 3.59e-15

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 68.98  E-value: 3.59e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13194478   24 PSNISAWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNMHANGASFFFLCIYMHIARGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|....
gi 13194478  104 YGSYLYKE--TWNIGVVLLLLVMATAFVGYVLPW 135
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPW 140
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-136 4.07e-11

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 57.25  E-value: 4.07e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 13194478    88 SFFFLCIYMHIARGLYYGSYLYKE--TWNIGVVLLLLVMATAFVGYVLPWG 136
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDD 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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