NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1318674858|gb|AUI47823|]
View 

hypothetical protein BUN20_15440 [Bacteroides fragilis]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 102-208 4.76e-22

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 99.59  E-value: 4.76e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 102 KNGEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDgqdgqdgqdgtdgkdGVDGTDGKDGQDGTDGKDGVDGTD 181
Cdd:NF038329  258 KDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLP---------------GKDGKDGQNGKDGLPGKDGKDGQP 322

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1318674858 182 GKDGAEGDKGKNGV-------APVITMKMDTDGH 208
Cdd:NF038329  323 GKDGLPGKDGKDGQpgkpapkTPEVPQKPDTAPH 356
Fib_succ_major super family cl09821
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 531-700 6.66e-20

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


The actual alignment was detected with superfamily member pfam09603:

Pssm-ID: 471939  Cd Length: 171  Bit Score: 87.51  E-value: 6.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 531 IGTQYWMADNLRTITNSagvissewrkDGIPryavygFPAGITEDSRTIRNQYGLLYNVGVFSGSTSLVPKGWKIPDHlS 610
Cdd:pfam09603   1 IGGQYWMAENLRYATYR----------DGDP------IETAKDANTDENCAGYGRLYNWEAAMDARGLCPEGWHVPTD-E 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 611 DWDTLRDFLGGDPKVAEALK---------------IAGFVGKPGGRRNADEPfAFQEKDEVGYWWFSSFDG---GECWAL 672
Cdd:pfam09603  64 EWKTLEAYLGGSEGAGSLLKatsggpnltvgngtnETGFNALPAGYRDGDGS-GFNADGKYAYFWTSTEDGskgAEAGSL 142

                         170       180
                  ....*....|....*....|....*....
gi 1318674858 673 CINPSDVAVAQCTN-TYSRSYGFSIRFIR 700
Cdd:pfam09603 143 GYRYFGLRRSVIRRgGANKGKGLSVRCVK 171
DUF4988 super family cl24822
Domain of unknown function; This family around 200 residues locates in the N-terminal of some ...
 180-304 4.27e-18

Domain of unknown function; This family around 200 residues locates in the N-terminal of some uncharacterized proteins in various Bacteroides and Alistipes species. The function of this family remains unknown. The N-terminus of this model has been clipped by ~30 residues as it was capturing parts of collagen sequences, pfam01391.


The actual alignment was detected with superfamily member pfam16378:

Pssm-ID: 435312 [Multi-domain]  Cd Length: 182  Bit Score: 82.52  E-value: 4.27e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 180 TDGKDGAegdkgknGVAPVITMKmDTDGHLYWAnKAPDGTSSFLLDNNGQKVRASGADGIVPVIGVNAAGYWTLDY--GS 257
Cdd:pfam16378  63 TNGKDGG-------GAAPVIGVR-DEEGLYYWT-VTTGGETTWLTDDNGNKIPAAGTDGKTPVISVDEEGYWTVSYdeGK 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1318674858 258 GPVELEDAAGNPMKAKGASG--DPMFRKVVSEDGYIVFYLSDGKTLKVP 304
Cdd:pfam16378 134 DGERILDEDGQPVKAVGGDSasDSFFKSVVTDEENLVVTLKNGTQISIP 182
 
Name Accession Description Interval E-value
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 102-208 4.76e-22

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 99.59  E-value: 4.76e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 102 KNGEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDgqdgqdgqdgtdgkdGVDGTDGKDGQDGTDGKDGVDGTD 181
Cdd:NF038329  258 KDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLP---------------GKDGKDGQNGKDGLPGKDGKDGQP 322

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1318674858 182 GKDGAEGDKGKNGV-------APVITMKMDTDGH 208
Cdd:NF038329  323 GKDGLPGKDGKDGQpgkpapkTPEVPQKPDTAPH 356
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 102-196 2.65e-21

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 97.28  E-value: 2.65e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 102 KNGEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDGKDGVDGTD 181
Cdd:NF038329  237 PDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKD 316

                          90
                  ....*....|....*
gi 1318674858 182 GKDGAEGDKGKNGVA 196
Cdd:NF038329  317 GKDGQPGKDGLPGKD 331
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 104-194 1.94e-20

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 94.59  E-value: 1.94e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 104 GEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDGKDGVDGTDGK 183
Cdd:NF038329  233 GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGL 312

                          90
                  ....*....|.
gi 1318674858 184 DGAEGDKGKNG 194
Cdd:NF038329  313 PGKDGKDGQPG 323
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 531-700 6.66e-20

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 87.51  E-value: 6.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 531 IGTQYWMADNLRTITNSagvissewrkDGIPryavygFPAGITEDSRTIRNQYGLLYNVGVFSGSTSLVPKGWKIPDHlS 610
Cdd:pfam09603   1 IGGQYWMAENLRYATYR----------DGDP------IETAKDANTDENCAGYGRLYNWEAAMDARGLCPEGWHVPTD-E 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 611 DWDTLRDFLGGDPKVAEALK---------------IAGFVGKPGGRRNADEPfAFQEKDEVGYWWFSSFDG---GECWAL 672
Cdd:pfam09603  64 EWKTLEAYLGGSEGAGSLLKatsggpnltvgngtnETGFNALPAGYRDGDGS-GFNADGKYAYFWTSTEDGskgAEAGSL 142

                         170       180
                  ....*....|....*....|....*....
gi 1318674858 673 CINPSDVAVAQCTN-TYSRSYGFSIRFIR 700
Cdd:pfam09603 143 GYRYFGLRRSVIRRgGANKGKGLSVRCVK 171
DUF4988 pfam16378
Domain of unknown function; This family around 200 residues locates in the N-terminal of some ...
 180-304 4.27e-18

Domain of unknown function; This family around 200 residues locates in the N-terminal of some uncharacterized proteins in various Bacteroides and Alistipes species. The function of this family remains unknown. The N-terminus of this model has been clipped by ~30 residues as it was capturing parts of collagen sequences, pfam01391.


Pssm-ID: 435312 [Multi-domain]  Cd Length: 182  Bit Score: 82.52  E-value: 4.27e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 180 TDGKDGAegdkgknGVAPVITMKmDTDGHLYWAnKAPDGTSSFLLDNNGQKVRASGADGIVPVIGVNAAGYWTLDY--GS 257
Cdd:pfam16378  63 TNGKDGG-------GAAPVIGVR-DEEGLYYWT-VTTGGETTWLTDDNGNKIPAAGTDGKTPVISVDEEGYWTVSYdeGK 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1318674858 258 GPVELEDAAGNPMKAKGASG--DPMFRKVVSEDGYIVFYLSDGKTLKVP 304
Cdd:pfam16378 134 DGERILDEDGQPVKAVGGDSasDSFFKSVVTDEENLVVTLKNGTQISIP 182
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 102-196 1.23e-15

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 79.95  E-value: 1.23e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 102 KNGEKGDDGKKGEDGKDGQNGQDGTDGK-----DGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDGKDG 176
Cdd:NF038329  199 ETGPAGEQGPAGPAGPDGEAGPAGEDGPagpagDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDG 278

                          90       100
                  ....*....|....*....|
gi 1318674858 177 VDGTDGKDGAEGDKGKNGVA 196
Cdd:NF038329  279 ERGPVGPAGKDGQNGKDGLP 298
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 523-701 1.25e-12

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 66.55  E-value: 1.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 523 GNSYRVMKIGTQYWMADNLRtitnsagvissewrkdgiprYAVYGfpAGITEDSRTIRNQYGLLYNVGvfSGSTSLVPKG 602
Cdd:TIGR02145   8 GQVYKTVKIGSQTWMAENLN--------------------YETEG--SWCYEDDEENCAKYGRLYTWA--AAMDSICPEG 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 603 WKIPDhLSDWDTLRDFLGGDPKVAEALKIA-------------GFVGKPGGRRNADEPFAfqEKDEVGYWWfSSFDGGEC 669
Cdd:TIGR02145  64 WHLPS-TTEWNTLFDAVGGKVNAGGKLKARsgwsksgngtddyGFSALPAGYRFSDGEFS--DDGEYAFFW-SSDEENED 139

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1318674858 670 WALCINPSDVAVAQCTNTYSRSYGFSIRFIRQ 701
Cdd:TIGR02145 140 SAYYMYLRYSSDGIFLIGEDKDDGLSVRCVKD 171
PHA03169 PHA03169
hypothetical protein; Provisional
 104-195 1.28e-06

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 51.51  E-value: 1.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 104 GEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDgKDGVDGTDGK 183
Cdd:PHA03169  141 PSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPD-EPGEPQSPTP 219

                          90
                  ....*....|..
gi 1318674858 184 DGAEGDKGKNGV 195
Cdd:PHA03169  220 QQAPSPNTQQAV 231
 
Name Accession Description Interval E-value
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 102-208 4.76e-22

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 99.59  E-value: 4.76e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 102 KNGEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDgqdgqdgqdgtdgkdGVDGTDGKDGQDGTDGKDGVDGTD 181
Cdd:NF038329  258 KDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLP---------------GKDGKDGQNGKDGLPGKDGKDGQP 322

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1318674858 182 GKDGAEGDKGKNGV-------APVITMKMDTDGH 208
Cdd:NF038329  323 GKDGLPGKDGKDGQpgkpapkTPEVPQKPDTAPH 356
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 102-196 2.65e-21

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 97.28  E-value: 2.65e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 102 KNGEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDGKDGVDGTD 181
Cdd:NF038329  237 PDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKD 316

                          90
                  ....*....|....*
gi 1318674858 182 GKDGAEGDKGKNGVA 196
Cdd:NF038329  317 GKDGQPGKDGLPGKD 331
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 104-194 1.94e-20

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 94.59  E-value: 1.94e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 104 GEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDGKDGVDGTDGK 183
Cdd:NF038329  233 GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGL 312

                          90
                  ....*....|.
gi 1318674858 184 DGAEGDKGKNG 194
Cdd:NF038329  313 PGKDGKDGQPG 323
Fib_succ_major pfam09603
Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino ...
 531-700 6.66e-20

Fibrobacter succinogenes major domain (Fib_succ_major); This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.


Pssm-ID: 462836  Cd Length: 171  Bit Score: 87.51  E-value: 6.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 531 IGTQYWMADNLRTITNSagvissewrkDGIPryavygFPAGITEDSRTIRNQYGLLYNVGVFSGSTSLVPKGWKIPDHlS 610
Cdd:pfam09603   1 IGGQYWMAENLRYATYR----------DGDP------IETAKDANTDENCAGYGRLYNWEAAMDARGLCPEGWHVPTD-E 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 611 DWDTLRDFLGGDPKVAEALK---------------IAGFVGKPGGRRNADEPfAFQEKDEVGYWWFSSFDG---GECWAL 672
Cdd:pfam09603  64 EWKTLEAYLGGSEGAGSLLKatsggpnltvgngtnETGFNALPAGYRDGDGS-GFNADGKYAYFWTSTEDGskgAEAGSL 142

                         170       180
                  ....*....|....*....|....*....
gi 1318674858 673 CINPSDVAVAQCTN-TYSRSYGFSIRFIR 700
Cdd:pfam09603 143 GYRYFGLRRSVIRRgGANKGKGLSVRCVK 171
DUF4988 pfam16378
Domain of unknown function; This family around 200 residues locates in the N-terminal of some ...
 180-304 4.27e-18

Domain of unknown function; This family around 200 residues locates in the N-terminal of some uncharacterized proteins in various Bacteroides and Alistipes species. The function of this family remains unknown. The N-terminus of this model has been clipped by ~30 residues as it was capturing parts of collagen sequences, pfam01391.


Pssm-ID: 435312 [Multi-domain]  Cd Length: 182  Bit Score: 82.52  E-value: 4.27e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 180 TDGKDGAegdkgknGVAPVITMKmDTDGHLYWAnKAPDGTSSFLLDNNGQKVRASGADGIVPVIGVNAAGYWTLDY--GS 257
Cdd:pfam16378  63 TNGKDGG-------GAAPVIGVR-DEEGLYYWT-VTTGGETTWLTDDNGNKIPAAGTDGKTPVISVDEEGYWTVSYdeGK 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1318674858 258 GPVELEDAAGNPMKAKGASG--DPMFRKVVSEDGYIVFYLSDGKTLKVP 304
Cdd:pfam16378 134 DGERILDEDGQPVKAVGGDSasDSFFKSVVTDEENLVVTLKNGTQISIP 182
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 102-196 1.23e-15

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 79.95  E-value: 1.23e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 102 KNGEKGDDGKKGEDGKDGQNGQDGTDGK-----DGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDGKDG 176
Cdd:NF038329  199 ETGPAGEQGPAGPAGPDGEAGPAGEDGPagpagDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDG 278

                          90       100
                  ....*....|....*....|
gi 1318674858 177 VDGTDGKDGAEGDKGKNGVA 196
Cdd:NF038329  279 ERGPVGPAGKDGQNGKDGLP 298
Fib_succ_major TIGR02145
Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids ...
 523-701 1.25e-12

Fibrobacter succinogenes major paralogous domain; This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron. [Cell envelope, Other]


Pssm-ID: 273995  Cd Length: 171  Bit Score: 66.55  E-value: 1.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 523 GNSYRVMKIGTQYWMADNLRtitnsagvissewrkdgiprYAVYGfpAGITEDSRTIRNQYGLLYNVGvfSGSTSLVPKG 602
Cdd:TIGR02145   8 GQVYKTVKIGSQTWMAENLN--------------------YETEG--SWCYEDDEENCAKYGRLYTWA--AAMDSICPEG 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 603 WKIPDhLSDWDTLRDFLGGDPKVAEALKIA-------------GFVGKPGGRRNADEPFAfqEKDEVGYWWfSSFDGGEC 669
Cdd:TIGR02145  64 WHLPS-TTEWNTLFDAVGGKVNAGGKLKARsgwsksgngtddyGFSALPAGYRFSDGEFS--DDGEYAFFW-SSDEENED 139

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1318674858 670 WALCINPSDVAVAQCTNTYSRSYGFSIRFIRQ 701
Cdd:TIGR02145 140 SAYYMYLRYSSDGIFLIGEDKDDGLSVRCVKD 171
PHA03169 PHA03169
hypothetical protein; Provisional
 104-195 1.28e-06

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 51.51  E-value: 1.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 104 GEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDgKDGVDGTDGK 183
Cdd:PHA03169  141 PSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPD-EPGEPQSPTP 219

                          90
                  ....*....|..
gi 1318674858 184 DGAEGDKGKNGV 195
Cdd:PHA03169  220 QQAPSPNTQQAV 231
PHA03169 PHA03169
hypothetical protein; Provisional
 107-221 4.80e-06

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 49.58  E-value: 4.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 107 GDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDGKDGVDGTDGKDGA 186
Cdd:PHA03169   96 GSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSP 175

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1318674858 187 EGDKGKNGVAPvitmkMDTDGhlywANKAPDGTSS 221
Cdd:PHA03169  176 EEPEPPTSEPE-----PDSPG----PPQSETPTSS 201
PHA03169 PHA03169
hypothetical protein; Provisional
 102-188 4.61e-05

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 46.50  E-value: 4.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 102 KNGEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDGKDGVDGTD 181
Cdd:PHA03169  121 ENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS 200


                  ....*..
gi 1318674858 182 GKDGAEG 188
Cdd:PHA03169  201 SPPPQSP 207
PHA03169 PHA03169
hypothetical protein; Provisional
 104-187 5.49e-05

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 46.12  E-value: 5.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 104 GEKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDgKDGQDGTDGKDGVDGTDGK 183
Cdd:PHA03169  150 APPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPD-EPGEPQSPTPQQAPSPNTQ 228


                  ....
gi 1318674858 184 DGAE 187
Cdd:PHA03169  229 QAVE 232
PHA03169 PHA03169
hypothetical protein; Provisional
 105-194 9.33e-05

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 45.35  E-value: 9.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318674858 105 EKGDDGKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGQDGQDGQDGTDGKDGVDGTDGKDGQDGTDGKDGVD-----G 179
Cdd:PHA03169  133 SHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSppdepG 212

                          90
                  ....*....|....*
gi 1318674858 180 TDGKDGAEGDKGKNG 194
Cdd:PHA03169  213 EPQSPTPQQAPSPNT 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH