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Conserved domains on  [gi|1317668748|gb|PLA59513|]
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hypothetical protein CYK15_02685 [Streptococcus anginosus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1000094)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 66-327 5.03e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 89.02  E-value: 5.03e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  66 YISLAQIASEDGQVEEAFAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEA-KQFSDEPLVTFGMAEIDFELG 144
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLlERDPDRAEALLELAQDYLKAG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 145 NFNQAIKEYASLDNRmiyEQTGVSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYF 223
Cdd:COG2956    91 LLDRAEELLEKLLEL---DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAyCELAELYLEQGDYDEAIEAL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 224 KQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEE 303
Cdd:COG2956   168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                         250       260
                  ....*....|....*....|....
gi 1317668748 304 IaLRLSNLYLEQERFDEVLKFEEQ 327
Cdd:COG2956   248 L-LALADLLERKEGLEAALALLER 270
TPR super family cl33886
Tetratricopeptide (TPR) repeat [General function prediction only];
261-401 1.29e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


The actual alignment was detected with superfamily member COG0457:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 261 LSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQ----DIDNVLTKW 336
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQalelDPDDAEALN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317668748 337 NIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYLHLVPDDVE 401
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
NrfG super family cl34742
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 11-89 1.51e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG4235:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  11 LQKQDLAHANKYFERA--LTNDTEEELLELADYLESIGFFPQAKRIYET---LAPHYPEAYISLAQIASEDGQVEEAFAY 85
Cdd:COG4235    28 LRLGRYDEALAAYEKAlrLDPDNADALLDLAEALLAAGDTEEAEELLERalaLDPDNPEALYLLGLAAFQQGDYAEAIAA 107


                  ....
gi 1317668748  86 LEEI 89
Cdd:COG4235   108 WQKL 111
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 66-327 5.03e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 89.02  E-value: 5.03e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  66 YISLAQIASEDGQVEEAFAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEA-KQFSDEPLVTFGMAEIDFELG 144
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLlERDPDRAEALLELAQDYLKAG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 145 NFNQAIKEYASLDNRmiyEQTGVSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYF 223
Cdd:COG2956    91 LLDRAEELLEKLLEL---DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAyCELAELYLEQGDYDEAIEAL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 224 KQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEE 303
Cdd:COG2956   168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                         250       260
                  ....*....|....*....|....
gi 1317668748 304 IaLRLSNLYLEQERFDEVLKFEEQ 327
Cdd:COG2956   248 L-LALADLLERKEGLEAALALLER 270
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 51-400 1.71e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.59  E-value: 1.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  51 AKRIYE---TLAPHYPEAYISLAQIASEDGQVEEAFAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEAKQFS 127
Cdd:TIGR02917 144 AQKSYEqalAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR 223

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 128 -DEPLVTFGMAEIDFELGNFNQAIKEYASLdnRMIYEQTGVSTYQRIGVSYaSLGKFEVAIEFLEKSLEIEYDDAVAFEL 206
Cdd:TIGR02917 224 pNNIAVLLALATILIEAGEFEEAEKHADAL--LKKAPNSPLAHYLKALVDF-QKKNYEDARETLQDALKSAPEYLPALLL 300

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 207 A-TILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDER 285
Cdd:TIGR02917 301 AgASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 286 KAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQ--DIDNVLTKWNIARAYQALE--QTTAALERYRLLLSD 361
Cdd:TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETaaQLDPELGRADLLLILSYLRsgQFDKALAAAKKLEKK 460

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1317668748 362 LKENPEF--LEQYIYLLRemGDFEEAKHQAEHYLHLVPDDV 400
Cdd:TIGR02917 461 QPDNASLhnLLGAIYLGK--GDLAKAREAFEKALSIEPDFF 499
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
261-401 1.29e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 261 LSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQ----DIDNVLTKW 336
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQalelDPDDAEALN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317668748 337 NIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYLHLVPDDVE 401
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 11-89 1.51e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  11 LQKQDLAHANKYFERA--LTNDTEEELLELADYLESIGFFPQAKRIYET---LAPHYPEAYISLAQIASEDGQVEEAFAY 85
Cdd:COG4235    28 LRLGRYDEALAAYEKAlrLDPDNADALLDLAEALLAAGDTEEAEELLERalaLDPDNPEALYLLGLAAFQQGDYAEAIAA 107


                  ....
gi 1317668748  86 LEEI 89
Cdd:COG4235   108 WQKL 111
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 66-327 5.03e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 89.02  E-value: 5.03e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  66 YISLAQIASEDGQVEEAFAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEA-KQFSDEPLVTFGMAEIDFELG 144
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLlERDPDRAEALLELAQDYLKAG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 145 NFNQAIKEYASLDNRmiyEQTGVSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYF 223
Cdd:COG2956    91 LLDRAEELLEKLLEL---DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAyCELAELYLEQGDYDEAIEAL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 224 KQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEE 303
Cdd:COG2956   168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                         250       260
                  ....*....|....*....|....
gi 1317668748 304 IaLRLSNLYLEQERFDEVLKFEEQ 327
Cdd:COG2956   248 L-LALADLLERKEGLEAALALLER 270
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 101-359 8.92e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 82.85  E-value: 8.92e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 101 LVKADLYQMEGLPDVAREKLAEA-KQFSDEPLVTFGMAEIDFELGNFNQAIKEYASLDNRmiyEQTGVSTYQRIGVSYAS 179
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEAlELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER---DPDRAEALLELAQDYLK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 180 LGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQ 258
Cdd:COG2956    89 AGLLDRAEELLEKLLELDPDDAEAlRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 259 QGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQDID---NVLTK 335
Cdd:COG2956   169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEldpSDDLL 248

                         250       260
                  ....*....|....*....|....
gi 1317668748 336 WNIARAYQALEQTTAALERYRLLL 359
Cdd:COG2956   249 LALADLLERKEGLEAALALLERQL 272
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 51-400 1.71e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.59  E-value: 1.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  51 AKRIYE---TLAPHYPEAYISLAQIASEDGQVEEAFAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEAKQFS 127
Cdd:TIGR02917 144 AQKSYEqalAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR 223

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 128 -DEPLVTFGMAEIDFELGNFNQAIKEYASLdnRMIYEQTGVSTYQRIGVSYaSLGKFEVAIEFLEKSLEIEYDDAVAFEL 206
Cdd:TIGR02917 224 pNNIAVLLALATILIEAGEFEEAEKHADAL--LKKAPNSPLAHYLKALVDF-QKKNYEDARETLQDALKSAPEYLPALLL 300

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 207 A-TILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDER 285
Cdd:TIGR02917 301 AgASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 286 KAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQ--DIDNVLTKWNIARAYQALE--QTTAALERYRLLLSD 361
Cdd:TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETaaQLDPELGRADLLLILSYLRsgQFDKALAAAKKLEKK 460

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1317668748 362 LKENPEF--LEQYIYLLRemGDFEEAKHQAEHYLHLVPDDV 400
Cdd:TIGR02917 461 QPDNASLhnLLGAIYLGK--GDLAKAREAFEKALSIEPDFF 499
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 134-394 2.24e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.92  E-value: 2.24e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 134 FGMAEIDFELGNFNQAIKEYASLDNrmIYEQTgVSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYD 212
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALE--LDPET-VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAlLELAQDYLK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 213 QKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLL 292
Cdd:COG2956    89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 293 KAKDNAEDLEEIALRLSNLYLEQERFDEVLKF----EEQDIDNVLTKWNIARAYQALEQTTAALERYRLLLsDLKENPEF 368
Cdd:COG2956   169 KALKLDPDCARALLLLAELYLEQGDYEEAIAAleraLEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-ELDPSDDL 247

                         250       260
                  ....*....|....*....|....*.
gi 1317668748 369 LEQYIYLLREMGDFEEAKHQAEHYLH 394
Cdd:COG2956   248 LLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 174-406 2.34e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.84  E-value: 2.34e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 174 GVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEE 252
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAhLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 253 ALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQ----D 328
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKalklD 174

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1317668748 329 IDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYLHLVPDDVEMQELY 406
Cdd:COG2956   175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALA 252
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 11-264 3.81e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.07  E-value: 3.81e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  11 LQKQDLAHANKYFERALTNDTEEE--LLELADYLESIGFFPQAKRIYETL---APHYPEAYISLAQIASEDGQVEEAFAY 85
Cdd:COG2956    19 LLNGQPDKAIDLLEEALELDPETVeaHLALGNLYRRRGEYDRAIRIHQKLlerDPDRAEALLELAQDYLKAGLLDRAEEL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  86 LEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEA-KQFSDEPLVTFGMAEIDFELGNFNQAIKEYASLdnrMIYEQ 164
Cdd:COG2956    99 LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLlKLGPENAHAYCELAELYLEQGDYDEAIEALEKA---LKLDP 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 165 TGVSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVAFE-LATILYDQKEYQKANLYFKQIDTISPEFEGYEYgYALS 243
Cdd:COG2956   176 DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPrLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADL 254

                         250       260
                  ....*....|....*....|.
gi 1317668748 244 LHAEHQTEEALRLTQQGLSKN 264
Cdd:COG2956   255 LERKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
167-395 4.03e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.49  E-value: 4.03e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 167 VSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLH 245
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEAlYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 246 AEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFE 325
Cdd:COG0457    88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 326 EQDIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYLHL 395
Cdd:COG0457   168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
128-369 4.09e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 4.09e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 128 DEPLVTFGMAEIDFELGNFNQAIKEYASLDNRmiyEQTGVSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FEL 206
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL---DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAlNNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 207 ATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERK 286
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 287 AEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQDIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENP 366
Cdd:COG0457   163 ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242


                  ...
gi 1317668748 367 EFL 369
Cdd:COG0457   243 YRA 245
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 177-327 3.97e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.63  E-value: 3.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 177 YASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALR 255
Cdd:COG3914    88 LQALGRYEEALALYRRALALNPDNAEAlFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1317668748 256 LTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQ 327
Cdd:COG3914   168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
58-330 1.56e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.18  E-value: 1.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  58 LAPHYPEAYISLAQIASEDGQVEEAFAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREklaeakqfsdeplvtfgma 137
Cdd:COG0457     3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALA------------------- 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 138 eidfelgNFNQAIKEYASLdnrmiyeqtgVSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEY 216
Cdd:COG0457    64 -------DYEQALELDPDD----------AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEAlYNLGLALLELGRY 126

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 217 QKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKD 296
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1317668748 297 NAEDLEEIALRLSNLYLEQERFDEVLKFEEQDID 330
Cdd:COG0457   207 LRKKLAILTLAALAELLLLALALLLALRLAALAL 240
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 14-409 7.08e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 57.79  E-value: 7.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  14 QDLAHANKYFERALTNDTEEELLELAdYLESiGFFPQAKRI---YETLAPHYPEAYISLAQIASEDGQVEEAFAYLEEIT 90
Cdd:TIGR02917 313 QAYQYLNQILKYAPNSHQARRLLASI-QLRL-GRVDEAIATlspALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  91 SDSDWYVTALLVKADLYQMEGLPDVAREKLAEAKQFSDEPL-VTFGMAEIDFELGNFNQAIKEYASLDNRMiyeQTGVST 169
Cdd:TIGR02917 391 ELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGrADLLLILSYLRSGQFDKALAAAKKLEKKQ---PDNASL 467

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 170 YQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEH 248
Cdd:TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAaANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 249 QTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLsnlyleqerfdevlkfeeqd 328
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML-------------------- 607

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 329 idnvltkwniARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYLHLVPDDVEMQELYNS 408
Cdd:TIGR02917 608 ----------GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677


                  .
gi 1317668748 409 L 409
Cdd:TIGR02917 678 L 678
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 11-403 2.43e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 2.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  11 LQKQDLAHANKYFERALTNDTEE--ELLELADYLESIGFFPQAKRIYE---TLAPHYPEAYISLAQIASEDGQVEEAFAY 85
Cdd:TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFfpAAANLARIDIQEGNPDDAIQRFEkvlTIDPKNLRAILALAGLYLRTGNEEEAVAW 555

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  86 LEE-ITSDSDWYVTALLVkADLYQMEGLPDVAREKLAEAKQFSDEPLVTFGM-AEIDFELGNFNQAIKEYASLDNRMIYE 163
Cdd:TIGR02917 556 LEKaAELNPQEIEPALAL-AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMlGRAQLAAGDLNKAVSSFKKLLALQPDS 634

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 164 QTgvsTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYFKQI------DTISPEFEGY 236
Cdd:TIGR02917 635 AL---ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAqIGLAQLLLAAKRTESAKKIAKSLqkqhpkAALGFELEGD 711

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 237 EYGyalslhAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSY---ELHDERKAEDYLlkaKDNAEDLeEIALRLSNLYL 313
Cdd:TIGR02917 712 LYL------RQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAsgnTAEAVKTLEAWL---KTHPNDA-VLRTALAELYL 781

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 314 EQERFDEVLKFEEQDI----DNVLTKWNIARAYQ------ALEQTTAALEryrllLSDlkENPEFLEQYIYLLREMGDFE 383
Cdd:TIGR02917 782 AQKDYDKAIKHYQTVVkkapDNAVVLNNLAWLYLelkdprALEYAERALK-----LAP--NIPAILDTLGWLLVEKGEAD 854

                         410       420
                  ....*....|....*....|
gi 1317668748 384 EAKHQAEHYLHLVPDDVEMQ 403
Cdd:TIGR02917 855 RALPLLRKAVNIAPEAAAIR 874
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 238-401 4.50e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 4.50e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 238 YGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQER 317
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 318 FDE----VLKFEEQDIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYL 393
Cdd:COG2956    92 LDRaeelLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171


                  ....*...
gi 1317668748 394 HLVPDDVE 401
Cdd:COG2956   172 KLDPDCAR 179
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 186-307 7.37e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.77  E-value: 7.37e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 186 AIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKN 264
Cdd:COG4235     2 AIARLRQALAANPNDAEGwLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1317668748 265 PFDTRLLLLASQLSYELHDERKAEDYLLKA-KDNAEDLEEIALR 307
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLlALLPADAPARLLE 125
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 69-353 1.05e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.32  E-value: 1.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  69 LAQIASEDGQVEEAFAYLEEITS-DSDWYVTALLVKADLYQMEGLPDVAREKLAEAKQFS-DEPLVTFGMAEIDFELGNF 146
Cdd:TIGR02917  96 LARAYLLQGKFQQVLDELPGKTLlDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDpRSLYAKLGLAQLALAENRF 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 147 NQAIKeyasLDNRMIYEQTGVSTYQRIGVSYA-SLGKFEVAIEFLEKSLEIEYDD-AVAFELATILYDQKEYQKANLYFK 224
Cdd:TIGR02917 176 DEARA----LIDEVLTADPGNVDALLLKGDLLlSLGNIELALAAYRKAIALRPNNiAVLLALATILIEAGEFEEAEKHAD 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 225 QIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEI 304
Cdd:TIGR02917 252 ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1317668748 305 ALRLSNLYLEQERFDEVL----KFEEQDIDNVLTKWNIARAYQALEQTTAALE 353
Cdd:TIGR02917 332 RRLLASIQLRLGRVDEAIatlsPALGLDPDDPAALSLLGEAYLALGDFEKAAE 384
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 186-406 1.20e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.84  E-value: 1.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 186 AIEFLEKSLEIEYDDAVAFELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNP 265
Cdd:COG3914    64 AGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNP 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 266 FDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEvlkfeeqdidnvltkwniarayqal 345
Cdd:COG3914   144 DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE------------------------- 198

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1317668748 346 eqttaALERYRLLLSDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYLHLVPDDVEMQELY 406
Cdd:COG3914   199 -----AIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFA 254
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 236-365 1.85e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.81  E-value: 1.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 236 YEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQ 315
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1317668748 316 ERFDEVLKF----EEQDIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKEN 365
Cdd:COG4783    86 GDYDEALALlekaLKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 170-277 2.44e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.23  E-value: 2.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 170 YQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEH 248
Cdd:COG4235    20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADAlLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99

                          90       100
                  ....*....|....*....|....*....
gi 1317668748 249 QTEEALRLTQQGLSKNPFDTRLLLLASQL 277
Cdd:COG4235   100 DYAEAIAAWQKLLALLPADAPARLLEASI 128
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-154 3.45e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 3.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  33 EELLELADYLESIGFFPQAKRIYETL---APHYPEAYISLAQIASEDGQVEEAFAYLEEITSDSDWYVTALLVKADLYQM 109
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKAlelDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1317668748 110 EGLPDVAREKLAEA-KQFSDEPLVTFGMAEIDFELGNFNQAIKEYA 154
Cdd:COG4783    85 AGDYDEALALLEKAlKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 9-400 4.59e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.01  E-value: 4.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748   9 ASLQKQDLAHANKYFERALTND-------TEEELLELA--DYLESIGFFPQAKRiyetLAPHYPEAYISLAQIASEDGQV 79
Cdd:TIGR02917 372 AYLALGDFEKAAEYLAKATELDpenaaarTQLGISKLSqgDPSEAIADLETAAQ----LDPELGRADLLLILSYLRSGQF 447

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  80 EEAFAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEA-KQFSDEPLVTFGMAEIDFELGNFNQAIKEYaslDN 158
Cdd:TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAlSIEPDFFPAAANLARIDIQEGNPDDAIQRF---EK 524

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 159 RMIYEQTGVSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDD-AVAFELATILYDQKEYQKANLYFKQIDTISPEFEGYE 237
Cdd:TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEiEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 238 YGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQER 317
Cdd:TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 318 FDEVLK----FEEQDIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREmGDFEEAKHQAEHYL 393
Cdd:TIGR02917 685 TESAKKiaksLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS-GNTAEAVKTLEAWL 763


                  ....*..
gi 1317668748 394 HLVPDDV 400
Cdd:TIGR02917 764 KTHPNDA 770
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 167-300 9.86e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.88  E-value: 9.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 167 VSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVAFE-LATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLH 245
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFAlLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1317668748 246 AEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAED 300
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 11-125 1.35e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.38  E-value: 1.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  11 LQKQDLAHANKYFERALTNDTEEE--LLELADYLESIGFFPQAKRIYET---LAPHYPEAYISLAQIASEDGQVEEAFAY 85
Cdd:COG3914    89 QALGRYEEALALYRRALALNPDNAeaLFNLGNLLLALGRLEEALAALRRalaLNPDFAEAYLNLGEALRRLGRLEEAIAA 168

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1317668748  86 LEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEAKQ 125
Cdd:COG3914   169 LRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 199-320 1.77e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 1.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 199 DDAVAFELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLS 278
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1317668748 279 YELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDE 320
Cdd:COG4783    83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 64-200 2.32e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 2.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  64 EAYISLAQIASEDGQVEEAFAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEA-KQFSDEPLVTFGMAEIDFE 142
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEAlELDPDEPEARLNLGLALLK 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1317668748 143 LGNFNQAIKEYaslDNRMIYEQTGVSTYQRIGVSYASLGKFEVAIEFLEKSLEIEYDD 200
Cdd:COG4783    85 AGDYDEALALL---EKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 65-320 3.91e-06

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 48.37  E-value: 3.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  65 AYISLAQIASEDGQVEEAFAYLEEIT-SDSDWYVTALLVKADLYQMEGLPDVAREKLAEAKQFSDE-PLVTFGMAEIDFE 142
Cdd:COG3071    52 AYLLAARAAQALGDYERRDEYLAQALeLAPEAELAVLLTRAELLLDQGQAEQALATLEALRAGAPRhPQVLRLLLQAYRQ 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 143 LGNFNQAIKEYASLDNRMIYEQTGVSTYQRigvsYASLGKFEVAIEFLE------KSL--EIEYDDAVAFELATILYDQK 214
Cdd:COG3071   132 LGDWEELLELLPALRKHKALSAEEAQALER----RAYLGLLRQAARDAEalkalwKALprAERRDPELAAAYARALIALG 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 215 EYQKAnlyFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYL--- 291
Cdd:COG3071   208 DHDEA---ERLLREALKRQWDPRLVRLYGRLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLeaa 284

                         250       260
                  ....*....|....*....|....*....
gi 1317668748 292 LKAKDNAEDLEEialrLSNLYLEQERFDE 320
Cdd:COG3071   285 LALRPSAEAYAE----LARLLEQLGDPEE 309
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
229-393 1.16e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 1.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 229 ISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRL 308
Cdd:COG0457     3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 309 SNLYLEQERFDEVLKFEEQ----DIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGDFEE 384
Cdd:COG0457    83 GLALQALGRYEEALEDYDKalelDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162


                  ....*....
gi 1317668748 385 AKHQAEHYL 393
Cdd:COG0457   163 ALELLEKLE 171
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 8-125 1.79e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.41  E-value: 1.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748   8 VASLQKQDLAHANKYFERALTNDTEEE--LLELADYLESIGFFPQAKRIYE---TLAPHYPEAYISLAQIASEDGQVEEA 82
Cdd:COG4783    12 QALLLAGDYDEAEALLEKALELDPDNPeaFALLGEILLQLGDLDEAIVLLHealELDPDEPEARLNLGLALLKAGDYDEA 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1317668748  83 FAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEAKQ 125
Cdd:COG4783    92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
177-265 2.39e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 2.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 177 YASLGKFEVAIEFLEKSLEIEYDDAVAF-ELATILYDQKEYQKAnLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALR 255
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALnNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|
gi 1317668748 256 LTQQGLSKNP 265
Cdd:COG3063    81 YLERALELDP 90
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
261-401 1.29e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 261 LSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQ----DIDNVLTKW 336
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQalelDPDDAEALN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317668748 337 NIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYLHLVPDDVE 401
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
95-294 2.66e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.21  E-value: 2.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  95 WYVTALLVKADLYQMEGLPDVAREKLAEAKQFSDEPLVTFGMAEIDFELGNFNQAIKEYASLDNRMIYEQTGVSTYQRIG 174
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 175 VSYASLGKFEVAIEFLEKSLEIEYDDAVAF-ELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEA 253
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAEAYnNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1317668748 254 LRLTQQGLSKNPFDTRLLLLAsQLSYELHDERKAEDYLLKA 294
Cdd:COG4785   161 IADLEKALELDPNDPERALWL-YLAERKLDPEKALALLLED 200
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 262-370 3.53e-04

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 41.38  E-value: 3.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 262 SKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAED--LEEIA-LRLSNLYLEQERFDEVLKFEEQDID---NVLTK 335
Cdd:COG2976    84 GGTAYAALAALLLAKAAVDAGDLDKAAAQLQWVLDNAKDpaLKALArLRLARVLLAQKKYDEALATLDAVKPeafAALYA 163

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1317668748 336 WNIARAYQALEQTTAALERYRLLLSDLKENPEFLE 370
Cdd:COG2976   164 ELRGDILLAQGDKAEARAAYQKALAALPEDAPLRQ 198
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 326-401 4.26e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 4.26e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1317668748 326 EQDIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYLHLVPDDVE 401
Cdd:COG4235    11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 252-367 4.30e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 4.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 252 EALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLK-FE---EQ 327
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEElLEralAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1317668748 328 DIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPE 367
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 181-399 6.60e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.43  E-value: 6.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 181 GKFEVAIEFLEKSLEIEYDDAVAFELATIL-YDQKEYQKANLYFKQIDTISPEFE-GYEYGYALSLHAEHQTEEALRLTQ 258
Cdd:COG3071    30 GRYARAEKLLSKAAEHSEAPLLAYLLAARAaQALGDYERRDEYLAQALELAPEAElAVLLTRAELLLDQGQAEQALATLE 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 259 QGLSKNPFDTRLLLLASQLSYELHDERKAEDYL-LKAKDNAEDLEEIALRLSNLYLEQERfdevlkfeeqdidnvltkwN 337
Cdd:COG3071   110 ALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLpALRKHKALSAEEAQALERRAYLGLLR-------------------Q 170

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1317668748 338 IARAYQALEQTTAALERyrlllsDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYLHLVPDD 399
Cdd:COG3071   171 AARDAEALKALWKALPR------AERRDPELAAAYARALIALGDHDEAERLLREALKRQWDP 226
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 116-265 9.44e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 9.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 116 AREKLAEAKQFSDEPLVTFGMAEIDFELGNFNQAIKEYASLDNRMIYEQTGVSTYQRIGVSYASLGKFEVAIEFLEKSLE 195
Cdd:COG5010     3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1317668748 196 IEYDDAVA-FELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNP 265
Cdd:COG5010    83 LDPNNPELyYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 13-323 1.21e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  13 KQDLAHANKYfeRALTNDTEEELLELADYLESIGFFPQAKRIYETLA---PHYPEAYISLAQIASEDGQVEEAFAYLEE- 88
Cdd:TIGR02917 584 KKALAILNEA--ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLalqPDSALALLLLADAYAVMKNYAKAITSLKRa 661

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  89 ITSDSDwYVTALLVKADLYQMEGLPDVAREKLAE-AKQFSDEPLVTFGMAEIDFELGNFNQAIKEYASLDNRmiyeQTGV 167
Cdd:TIGR02917 662 LELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSlQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR----APSS 736

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 168 STYQRIGVSYASLGKFEVAIEFLEKSLEIEYDDAVA-FELATILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALsLHA 246
Cdd:TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLrTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAW-LYL 815

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1317668748 247 EHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLK 323
Cdd:TIGR02917 816 ELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 11-89 1.51e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  11 LQKQDLAHANKYFERA--LTNDTEEELLELADYLESIGFFPQAKRIYET---LAPHYPEAYISLAQIASEDGQVEEAFAY 85
Cdd:COG4235    28 LRLGRYDEALAAYEKAlrLDPDNADALLDLAEALLAAGDTEEAEELLERalaLDPDNPEALYLLGLAAFQQGDYAEAIAA 107


                  ....
gi 1317668748  86 LEEI 89
Cdd:COG4235   108 WQKL 111
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 60-153 2.14e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 2.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  60 PHYPEAYISLAQIASEDGQVEEAFAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEA-KQFSDEPLVTFGMAE 138
Cdd:COG4235    14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAlALDPDNPEALYLLGL 93

                          90
                  ....*....|....*
gi 1317668748 139 IDFELGNFNQAIKEY 153
Cdd:COG4235    94 AAFQQGDYAEAIAAW 108
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 241-390 2.32e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.89  E-value: 2.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 241 ALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEE-IALRLSNLYLEQERFD 319
Cdd:COG3071    23 GLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELaVLLTRAELLLDQGQAE 102

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317668748 320 EVLKF----EEQDIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLrEMGDFEEAKHQAE 390
Cdd:COG3071   103 QALATlealRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRA-YLGLLRQAARDAE 176
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 306-409 3.14e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 3.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 306 LRLSNLYLEQERFDEVLKF----EEQDIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGD 381
Cdd:COG4235    21 LLLGRAYLRLGRYDEALAAyekaLRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100

                          90       100
                  ....*....|....*....|....*...
gi 1317668748 382 FEEAKHQAEHYLHLVPDDVEMQELYNSL 409
Cdd:COG4235   101 YAEAIAAWQKLLALLPADAPARLLEASI 128
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
209-301 4.22e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 4.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 209 ILYDQKEYQKANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLtQQGLSKNPFDTRLLLLASQLSYELHDERKAE 288
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|...
gi 1317668748 289 DYLLKAKDNAEDL 301
Cdd:COG3063    80 AYLERALELDPSA 92
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-265 4.43e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 4.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748   7 MVASLQKQ--DLAHANKYFER--ALTNDTEEELLELADYLESIGFFPQAKRIYE---TLAPHYPEAYISLAQIASEDGQV 79
Cdd:TIGR02917 606 MLGRAQLAagDLNKAVSSFKKllALQPDSALALLLLADAYAVMKNYAKAITSLKralELKPDNTEAQIGLAQLLLAAKRT 685

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  80 EEAFAYLEEITSDSDWYVTALLVKADLYQMEGLPDVAREKLAEAKQFSDEPLVTFGMAEIDFELGNFNQAIKEYASLDNR 159
Cdd:TIGR02917 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 160 MIyEQTGVSTYQriGVSYASLGKFEVAIEFLEKSLEIEYDDAVAFELATILYDQKEYQKANLYFKQIDTISPEFEGYEYG 239
Cdd:TIGR02917 766 HP-NDAVLRTAL--AELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDT 842

                         250       260
                  ....*....|....*....|....*.
gi 1317668748 240 YALSLHAEHQTEEALRLTQQGLSKNP 265
Cdd:TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAP 868
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 249-397 4.45e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.63  E-value: 4.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 249 QTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQ- 327
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQa 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1317668748 328 ---DIDNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGDFEEAKHQAEHYLHLVP 397
Cdd:COG5010    81 lqlDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
279-360 4.84e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 4.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 279 YELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFE---EQDIDNVLTKWNIARAYQALEQTTAALERY 355
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEkalKLDPNNAEALLNLAELLLELGDYDEALAYL 82


                  ....*
gi 1317668748 356 RLLLS 360
Cdd:COG3063    83 ERALE 87
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 306-401 5.90e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.09  E-value: 5.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 306 LRLSNLYLEQERFDEVLKFEEQDI----DNVLTKWNIARAYQALEQTTAALERYRLLLSDLKENPEFLEQYIYLLREMGD 381
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKALeldpDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87

                          90       100
                  ....*....|....*....|
gi 1317668748 382 FEEAKHQAEHYLHLVPDDVE 401
Cdd:COG4783    88 YDEALALLEKALKLDPEHPE 107
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 173-400 6.64e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.91  E-value: 6.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 173 IGVSYASLGKFEVAIEFLEKSLEIEYDD-AVAFELATILYDQKEYQK--------------------------------- 218
Cdd:TIGR02917  62 LGKIYLALGDYAAAEKELRKALSLGYPKnQVLPLLARAYLLQGKFQQvldelpgktllddegaaellalrglaylglgql 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 219 --ANLYFKQIDTISPEFEGYEYGYALSLHAEHQTEEALRLTQQGLSKNPFDTRLLLLASQLSYELHDERKAEDYLLKAKD 296
Cdd:TIGR02917 142 elAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 297 NAEDLEEIALRLSNLYLEQERFDEVlkfeEQDIDNVLTKWN---IARAYQAL-----EQTTAALERyrlLLSDLKENPEF 368
Cdd:TIGR02917 222 LRPNNIAVLLALATILIEAGEFEEA----EKHADALLKKAPnspLAHYLKALvdfqkKNYEDARET---LQDALKSAPEY 294

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1317668748 369 LEQYIYL---LREMGDFEEAKHQAEHYLHLVPDDV 400
Cdd:TIGR02917 295 LPALLLAgasEYQLGNLEQAYQYLNQILKYAPNSH 329
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 96-364 7.46e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 38.43  E-value: 7.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748  96 YVTALLVKADLyqmeGLPDVAREKLAEA-KQFSDEPLVTFGMAEIDFELGNFNQAIKEY---ASLDNRMIYE--QTGVST 169
Cdd:TIGR00990 368 YIKRASMNLEL----GDPDKAEEDFDKAlKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYqksIDLDPDFIFShiQLGVTQ 443

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 170 YqRIGVSYASLGKFEVAIEFLEKSLEieyddaVAFELATILYDQKEYQKAnlyFKQIDTispefegyeygyALSLHAEhq 249
Cdd:TIGR00990 444 Y-KEGSIASSMATFRRCKKNFPEAPD------VYNYYGELLLDQNKFDEA---IEKFDT------------AIELEKE-- 499

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317668748 250 teealrltQQGLSKNPFDtrLLLLASQLSYELHDERKAEDYLLKAKDNAEDLEEIALRLSNLYLEQERFDEVLKFEEQDI 329
Cdd:TIGR00990 500 --------TKPMYMNVLP--LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1317668748 330 DNVLTKWNIARAYQALEQTTAAL---ERYRLLLSDLKE 364
Cdd:TIGR00990 570 ELARTEGELVQAISYAEATRTQIqvqEDYPVLASKLQG 607
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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