|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-140 |
5.26e-95 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 277.82 E-value: 5.26e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00156 139 LLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKD 218
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00156 219 LVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 278
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-138 |
1.90e-41 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 141.47 E-value: 1.90e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEK----IPFHPY 75
Cdd:COG1290 160 LFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPY 239
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1315891607 76 FTFKDsiTFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 138
Cdd:COG1290 240 YTVKD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
59-140 |
5.17e-28 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 100.41 E-value: 5.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 59 NPLGLNGNIEKIPFHPYFTFKDSITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 138
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
..
gi 1315891607 139 KL 140
Cdd:cd00290 81 KL 82
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-105 |
1.58e-25 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 94.62 E-value: 1.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 79
Cdd:pfam13631 64 ILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVK 143
|
90 100
....*....|....*....|....*.
gi 1315891607 80 DSITFILMMSLLIMLCLINPYLLGDP 105
Cdd:pfam13631 144 MLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
88-140 |
3.23e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 46.71 E-value: 3.23e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1315891607 88 MSLLIMLCLINPYLLGDPynfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-140 |
5.26e-95 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 277.82 E-value: 5.26e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00156 139 LLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKD 218
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00156 219 LVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 278
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-140 |
9.78e-83 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 247.51 E-value: 9.78e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00145 150 LLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKD 229
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00145 230 LVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-140 |
6.33e-82 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 244.82 E-value: 6.33e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00191 146 LLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKD 225
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00191 226 ILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKL 285
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-140 |
6.14e-81 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 242.88 E-value: 6.14e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00119 150 LLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKD 229
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00119 230 LLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-140 |
1.95e-80 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 241.48 E-value: 1.95e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00131 149 LLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKD 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00131 229 LLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKL 288
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-140 |
3.26e-79 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 238.43 E-value: 3.26e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00074 150 LLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKD 229
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00074 230 LLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-140 |
8.47e-77 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 232.22 E-value: 8.47e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00100 149 LLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKD 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00100 229 ILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 288
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-140 |
3.70e-76 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 230.72 E-value: 3.70e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00016 150 LLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKD 229
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00016 230 IVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKL 289
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-140 |
2.57e-74 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 226.13 E-value: 2.57e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00034 149 LVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKD 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00034 229 LVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKL 288
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-140 |
3.29e-64 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 200.15 E-value: 3.29e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00224 150 LFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKD 229
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00224 230 ALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKL 289
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-140 |
7.48e-63 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 196.46 E-value: 7.48e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00022 148 LLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKD 227
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00022 228 WYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKL 287
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-140 |
3.41e-62 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 194.92 E-value: 3.41e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00053 150 LLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKD 229
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00053 230 LYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-140 |
1.98e-50 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 163.96 E-value: 1.98e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00086 138 LLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD 217
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 81 SITFILMMsLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00086 218 AYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKV 276
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-140 |
1.60e-45 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 152.01 E-value: 1.60e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKD 80
Cdd:MTH00033 146 LVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKD 225
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1315891607 81 SITFILMMSLLIMLClINPY---LLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00033 226 ILGFLILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKL 287
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-138 |
1.90e-41 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 141.47 E-value: 1.90e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEK----IPFHPY 75
Cdd:COG1290 160 LFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPY 239
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1315891607 76 FTFKDsiTFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 138
Cdd:COG1290 240 YTVKD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-140 |
3.34e-35 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 124.32 E-value: 3.34e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNI-EKIPFHPYFTFK 79
Cdd:MTH00046 140 IVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVK 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315891607 80 DSITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:MTH00046 220 DLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKI 280
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
59-140 |
5.17e-28 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 100.41 E-value: 5.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 59 NPLGLNGNIEKIPFHPYFTFKDSITFILMMSLLIMLCLINPYLLGDPYNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 138
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
..
gi 1315891607 139 KL 140
Cdd:cd00290 81 KL 82
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-105 |
1.58e-25 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 94.62 E-value: 1.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 79
Cdd:pfam13631 64 ILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVK 143
|
90 100
....*....|....*....|....*.
gi 1315891607 80 DSITFILMMSLLIMLCLINPYLLGDP 105
Cdd:pfam13631 144 MLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-58 |
2.89e-19 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 79.33 E-value: 2.89e-19
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSN 58
Cdd:cd00284 143 LFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-56 |
3.34e-17 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 73.96 E-value: 3.34e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1315891607 1 LLSAIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTG 56
Cdd:pfam00033 134 LLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
110-140 |
2.41e-15 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 66.73 E-value: 2.41e-15
10 20 30
....*....|....*....|....*....|.
gi 1315891607 110 PANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKL 31
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
88-140 |
9.45e-09 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 50.95 E-value: 9.45e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1315891607 88 MSLLIMLCLINPYLLGDPynfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:COG5679 49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKL 96
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
89-140 |
1.33e-07 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 47.69 E-value: 1.33e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1315891607 89 SLLIMLCLINPYLLGDPynfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:CHL00058 49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKL 95
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
88-140 |
3.23e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 46.71 E-value: 3.23e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1315891607 88 MSLLIMLCLINPYLLGDPynfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 140
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
3-61 |
1.74e-05 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 42.78 E-value: 1.74e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891607 3 SAIPYLGMDLVQWVWGGFAVDNATLNRFFTFH-FMLPFVIAAMAAIHLFFLHQTGSNNPL 61
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
4-61 |
3.47e-05 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 41.63 E-value: 3.47e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1315891607 4 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFH-FMLPFVIAAMAAIHLFFLHQTGSNNPL 61
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
|