|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-137 |
4.75e-95 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 277.82 E-value: 4.75e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00156 142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVG 221
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00156 222 FIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 278
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-135 |
6.90e-42 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 142.62 E-value: 6.90e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEK----IPFHPYFTF 75
Cdd:COG1290 163 AIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTV 242
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 76 KDsiTFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 135
Cdd:COG1290 243 KD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
56-137 |
1.41e-29 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 104.26 E-value: 1.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 56 NPLGLNGNIEKIPFHPYFTFKDSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 135
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
..
gi 1315891527 136 KL 137
Cdd:cd00290 81 KL 82
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-102 |
6.11e-25 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 93.07 E-value: 6.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSI 79
Cdd:pfam13631 67 SIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLL 146
|
90 100
....*....|....*....|...
gi 1315891527 80 TFILMMSLLIMLCLINPYLLGDP 102
Cdd:pfam13631 147 FFLITVALLIGLAQINPIWLGGP 169
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
85-137 |
2.53e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 47.10 E-value: 2.53e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1315891527 85 MSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-137 |
4.75e-95 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 277.82 E-value: 4.75e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00156 142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVG 221
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00156 222 FIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 278
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-137 |
1.98e-82 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 246.36 E-value: 1.98e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00145 153 AIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVG 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00145 233 FVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-137 |
4.45e-82 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 245.21 E-value: 4.45e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00191 149 AIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILG 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00191 229 FFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKL 285
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-137 |
1.70e-80 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 241.73 E-value: 1.70e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00119 153 AIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLG 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00119 233 LTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-137 |
2.39e-80 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 241.09 E-value: 2.39e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00131 152 AVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLG 231
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00131 232 FAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKL 288
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-137 |
4.36e-79 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 238.04 E-value: 4.36e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00074 153 AIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLG 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00074 233 FLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-137 |
7.34e-77 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 232.22 E-value: 7.34e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00100 152 AIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILG 231
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00100 232 LLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 288
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-137 |
3.58e-76 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 230.33 E-value: 3.58e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00016 153 AIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVG 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00016 233 FIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKL 289
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-137 |
3.79e-74 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 225.36 E-value: 3.79e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00034 152 AVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVG 231
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00034 232 FLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKL 288
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-137 |
2.09e-64 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 200.53 E-value: 2.09e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00224 153 AIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALG 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00224 233 YLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKL 289
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-137 |
1.87e-62 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 195.30 E-value: 1.87e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00022 151 AIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYG 230
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00022 231 IVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKL 287
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-137 |
8.90e-62 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 193.77 E-value: 8.90e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00053 153 AIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYG 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00053 233 AVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKL 289
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-137 |
4.04e-50 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 163.19 E-value: 4.04e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00086 141 VIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN 220
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMsLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00086 221 IIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKV 276
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-137 |
1.14e-45 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 152.40 E-value: 1.14e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSIT 80
Cdd:MTH00033 149 AIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILG 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 81 FILMMSLLIMLClINPY---LLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00033 229 FLILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKL 287
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-135 |
6.90e-42 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 142.62 E-value: 6.90e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEK----IPFHPYFTF 75
Cdd:COG1290 163 AIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTV 242
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 76 KDsiTFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 135
Cdd:COG1290 243 KD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-137 |
2.68e-36 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 127.02 E-value: 2.68e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 2 IPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSNNPLGLNGNI-EKIPFHPYFTFKDSIT 80
Cdd:MTH00046 144 VPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFL 223
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891527 81 FILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:MTH00046 224 FMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKI 280
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
56-137 |
1.41e-29 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 104.26 E-value: 1.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 56 NPLGLNGNIEKIPFHPYFTFKDSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 135
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
..
gi 1315891527 136 KL 137
Cdd:cd00290 81 KL 82
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-102 |
6.11e-25 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 93.07 E-value: 6.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFM-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFKDSI 79
Cdd:pfam13631 67 SIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLL 146
|
90 100
....*....|....*....|...
gi 1315891527 80 TFILMMSLLIMLCLINPYLLGDP 102
Cdd:pfam13631 147 FFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-55 |
1.51e-18 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 77.41 E-value: 1.51e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTGSN 55
Cdd:cd00284 146 AIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-53 |
1.90e-16 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 71.64 E-value: 1.90e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFHFMLPFVIAAMAAIHLFFLHQTG 53
Cdd:pfam00033 137 AIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
107-137 |
1.34e-15 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 67.12 E-value: 1.34e-15
10 20 30
....*....|....*....|....*....|.
gi 1315891527 107 PANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKL 31
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
85-137 |
6.99e-09 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 51.33 E-value: 6.99e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1315891527 85 MSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:COG5679 49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKL 96
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
86-137 |
1.06e-07 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 48.07 E-value: 1.06e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1315891527 86 SLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:CHL00058 49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKL 95
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
85-137 |
2.53e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 47.10 E-value: 2.53e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1315891527 85 MSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKL 137
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-58 |
2.18e-05 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 42.39 E-value: 2.18e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFH-FMLPFVIAAMAAIHLFFLHQTGSNNPL 58
Cdd:PRK03735 165 AIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-58 |
2.64e-05 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 42.02 E-value: 2.64e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1315891527 1 AIPYLGMDLVQWVWGGFAVDNATLNRFFTFH-FMLPFVIAAMAAIHLFFLHQTGSNNPL 58
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
|