|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-140 |
3.07e-88 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 260.48 E-value: 3.07e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00156 138 NLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFK 217
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00156 218 DLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-139 |
1.72e-37 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 131.07 E-value: 1.72e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFH-F*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEK----IPFHP 75
Cdd:COG1290 159 GLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHP 238
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1315891511 76 YFTFKDsiTFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPN 139
Cdd:COG1290 239 YYTVKD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
60-140 |
1.42e-25 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 94.25 E-value: 1.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 60 NPLGL*G*IEKIPFHPYFTFKDSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPN 139
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
.
gi 1315891511 140 K 140
Cdd:cd00290 81 K 81
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-106 |
3.73e-22 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 86.14 E-value: 3.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*-LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTF 79
Cdd:pfam13631 63 GILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAV 142
|
90 100
....*....|....*....|....*..
gi 1315891511 80 KDSITFILM*SLLIMLCLINPYLLGDP 106
Cdd:pfam13631 143 KMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
90-140 |
2.19e-05 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 41.71 E-value: 2.19e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1315891511 90 SLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:TIGR01156 49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNK 94
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-140 |
3.07e-88 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 260.48 E-value: 3.07e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00156 138 NLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFK 217
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00156 218 DLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-140 |
5.77e-78 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 235.18 E-value: 5.77e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00145 149 NLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00145 229 DLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-140 |
5.15e-77 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 232.50 E-value: 5.15e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00191 145 NLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYK 224
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00191 225 DILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNK 284
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-140 |
8.31e-76 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 229.79 E-value: 8.31e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00119 149 NLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00119 229 DLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-140 |
9.81e-76 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 229.54 E-value: 9.81e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00131 148 NLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYK 227
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00131 228 DLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-140 |
1.58e-74 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 226.49 E-value: 1.58e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00074 149 NLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00074 229 DLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-140 |
2.79e-72 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 220.67 E-value: 2.79e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00100 148 NLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIK 227
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00100 228 DILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-140 |
9.20e-72 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 219.55 E-value: 9.20e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00016 149 NLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00016 229 DIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNK 288
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-140 |
8.44e-69 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 211.87 E-value: 8.44e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00034 148 NLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTK 227
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00034 228 DLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-140 |
8.05e-60 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 188.98 E-value: 8.05e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00224 149 NLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00224 229 DALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNK 288
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-140 |
5.03e-57 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 181.83 E-value: 5.03e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00053 149 NLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00053 229 DLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-140 |
8.50e-57 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 181.05 E-value: 8.50e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00022 147 NLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSK 226
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00022 227 DWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNK 286
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-140 |
3.09e-48 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 158.18 E-value: 3.09e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00086 137 SLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNK 216
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*sLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00086 217 DAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNK 275
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-140 |
2.69e-43 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 146.24 E-value: 2.69e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTFK 80
Cdd:MTH00033 145 NLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIK 224
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1315891511 81 DSITFILM*SLLIMLClINPY---LLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00033 225 DILGFLILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNK 286
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-139 |
1.72e-37 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 131.07 E-value: 1.72e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFH-F*LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEK----IPFHP 75
Cdd:COG1290 159 GLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHP 238
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1315891511 76 YFTFKDsiTFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPN 139
Cdd:COG1290 239 YYTVKD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-140 |
4.43e-32 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 116.24 E-value: 4.43e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 2 LLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGL*-G*IEKIPFHPYFTFK 80
Cdd:MTH00046 140 IVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSnGYSDVVYFHSYFTVK 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 81 DSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:MTH00046 220 DLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSK 279
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
60-140 |
1.42e-25 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 94.25 E-value: 1.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 60 NPLGL*G*IEKIPFHPYFTFKDSITFILM*SLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAIL*SIPN 139
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
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.
gi 1315891511 140 K 140
Cdd:cd00290 81 K 81
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| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-106 |
3.73e-22 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 86.14 E-value: 3.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*-LPFVIAAMAAIHLFFLHQTGSNNPLGL*G*IEKIPFHPYFTF 79
Cdd:pfam13631 63 GILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAV 142
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90 100
....*....|....*....|....*..
gi 1315891511 80 KDSITFILM*SLLIMLCLINPYLLGDP 106
Cdd:pfam13631 143 KMLLFFLITVALLIGLAQINPIWLGGP 169
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| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-59 |
4.10e-18 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 76.25 E-value: 4.10e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTGSN 59
Cdd:cd00284 142 NLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
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| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-57 |
1.90e-16 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 71.64 E-value: 1.90e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891511 1 NLLSAIPYL*M*LVQW*WGGFAVDNATLKRFFTFHF*LPFVIAAMAAIHLFFLHQTG 57
Cdd:pfam00033 133 NLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
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| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
111-140 |
4.33e-13 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 60.96 E-value: 4.33e-13
10 20 30
....*....|....*....|....*....|
gi 1315891511 111 PANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSK 30
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| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
90-140 |
5.70e-07 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 45.94 E-value: 5.70e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1315891511 90 SLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:COG5679 50 ALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNK 95
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| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
90-140 |
1.33e-05 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 42.30 E-value: 1.33e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1315891511 90 SLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:CHL00058 49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNK 94
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| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
90-140 |
2.19e-05 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 41.71 E-value: 2.19e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1315891511 90 SLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAIL*SIPNK 140
Cdd:TIGR01156 49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNK 94
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| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
4-62 |
1.71e-04 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 39.69 E-value: 1.71e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891511 4 SAIPYL*M*LVQW*WGGFAVDNATLKRFFTFH-F*LPFVIAAMAAIHLFFLHQTGSNNPL 62
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
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| petB |
CHL00070 |
cytochrome b6 |
5-62 |
4.18e-04 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 38.55 E-value: 4.18e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1315891511 5 AIPYL*M*LVQW*WGGFAVDNATLKRFFTFH-F*LPFVIAAMAAIHLFFLHQTGSNNPL 62
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
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