|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-140 |
2.30e-96 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 281.29 E-value: 2.30e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00156 138 NLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFK 217
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00156 218 DLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-139 |
4.22e-43 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 145.70 E-value: 4.22e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFH-F*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEK----IPFHP 75
Cdd:COG1290 159 GLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHP 238
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1315891505 76 YFTFKDsiTFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 139
Cdd:COG1290 239 YYTVKD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
60-140 |
6.79e-29 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 102.72 E-value: 6.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 60 NPLGLNGNIEKIPFHPYFTFKDSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 139
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
.
gi 1315891505 140 K 140
Cdd:cd00290 81 K 81
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-106 |
8.25e-26 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 95.39 E-value: 8.25e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTF 79
Cdd:pfam13631 63 GILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAV 142
|
90 100
....*....|....*....|....*..
gi 1315891505 80 KDSITFILMMSLLIMLCLINPYLLGDP 106
Cdd:pfam13631 143 KMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
89-140 |
1.04e-06 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 45.56 E-value: 1.04e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1315891505 89 MSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNK 94
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-140 |
2.30e-96 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 281.29 E-value: 2.30e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00156 138 NLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFK 217
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00156 218 DLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-140 |
7.85e-84 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 250.21 E-value: 7.85e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00145 149 NLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00145 229 DLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-140 |
3.95e-83 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 247.91 E-value: 3.95e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00191 145 NLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYK 224
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00191 225 DILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNK 284
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-140 |
2.99e-82 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 246.35 E-value: 2.99e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00119 149 NLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00119 229 DLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-140 |
6.15e-82 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 245.33 E-value: 6.15e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00131 148 NLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYK 227
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00131 228 DLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-140 |
1.79e-80 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 241.51 E-value: 1.79e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00074 149 NLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00074 229 DLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-140 |
3.19e-78 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 236.07 E-value: 3.19e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00100 148 NLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIK 227
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00100 228 DILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-140 |
1.12e-77 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 234.57 E-value: 1.12e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00016 149 NLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00016 229 DIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNK 288
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-140 |
1.80e-74 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 226.51 E-value: 1.80e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00034 148 NLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTK 227
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00034 228 DLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNK 287
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-140 |
5.13e-65 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 202.07 E-value: 5.13e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00224 149 NLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00224 229 DALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNK 288
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-140 |
1.27e-62 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 196.08 E-value: 1.27e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00022 147 NLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSK 226
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00022 227 DWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNK 286
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-140 |
4.41e-62 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 194.54 E-value: 4.41e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00053 149 NLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLK 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00053 229 DLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNK 288
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-140 |
5.57e-52 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 167.81 E-value: 5.57e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00086 137 SLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNK 216
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMsLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00086 217 DAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNK 275
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-140 |
1.88e-46 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 154.33 E-value: 1.88e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTFK 80
Cdd:MTH00033 145 NLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIK 224
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1315891505 81 DSITFILMMSLLIMLClINPY---LLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00033 225 DILGFLILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNK 286
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-139 |
4.22e-43 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 145.70 E-value: 4.22e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFH-F*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEK----IPFHP 75
Cdd:COG1290 159 GLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHP 238
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1315891505 76 YFTFKDsiTFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 139
Cdd:COG1290 239 YYTVKD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPG 300
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-140 |
3.09e-36 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 127.02 E-value: 3.09e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 2 LLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNI-EKIPFHPYFTFK 80
Cdd:MTH00046 140 IVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVK 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 81 DSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:MTH00046 220 DLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSK 279
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
60-140 |
6.79e-29 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 102.72 E-value: 6.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 60 NPLGLNGNIEKIPFHPYFTFKDSITFILMMSLLIMLCLINPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 139
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
.
gi 1315891505 140 K 140
Cdd:cd00290 81 K 81
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-106 |
8.25e-26 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 95.39 E-value: 8.25e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*-LPFVIAAMAAIHLFFLHQTGSNNPLGLNGNIEKIPFHPYFTF 79
Cdd:pfam13631 63 GILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAV 142
|
90 100
....*....|....*....|....*..
gi 1315891505 80 KDSITFILMMSLLIMLCLINPYLLGDP 106
Cdd:pfam13631 143 KMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-59 |
6.25e-20 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 81.26 E-value: 6.25e-20
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTGSN 59
Cdd:cd00284 142 NLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-57 |
2.94e-18 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 76.65 E-value: 2.94e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315891505 1 NLLSAIPYLGM*LVQWVWGGFAVDNATLNRFFTFHF*LPFVIAAMAAIHLFFLHQTG 57
Cdd:pfam00033 133 NLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
111-140 |
5.01e-15 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 65.96 E-value: 5.01e-15
10 20 30
....*....|....*....|....*....|
gi 1315891505 111 PANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSK 30
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
89-140 |
2.57e-08 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 49.79 E-value: 2.57e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1315891505 89 MSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:COG5679 49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNK 95
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
90-140 |
5.58e-07 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 46.15 E-value: 5.58e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1315891505 90 SLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:CHL00058 49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNK 94
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
89-140 |
1.04e-06 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 45.56 E-value: 1.04e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1315891505 89 MSLLIMLCLINPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNK 140
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNK 94
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
4-62 |
6.04e-06 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 43.93 E-value: 6.04e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315891505 4 SAIPYLGM*LVQWVWGGFAVDNATLNRFFTFH-F*LPFVIAAMAAIHLFFLHQTGSNNPL 62
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
5-62 |
1.52e-05 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 42.79 E-value: 1.52e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1315891505 5 AIPYLGM*LVQWVWGGFAVDNATLNRFFTFH-F*LPFVIAAMAAIHLFFLHQTGSNNPL 62
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
|