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Conserved domains on  [gi|1313375804|dbj|GBE53872|]
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hypothetical protein BMS3Bbin15_00018 [archaeon BMS3Bbin15]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5615 super family cl41957
Domain of unknown function (DUF5615); This is a domain of unknown function found in potential ...
 5-45 3.11e-07

Domain of unknown function (DUF5615); This is a domain of unknown function found in potential toxin-antitoxin system component.


The actual alignment was detected with superfamily member pfam18480:

Pssm-ID: 477881  Cd Length: 77  Bit Score: 42.12  E-value: 3.11e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1313375804  5 KFLLDADMPRSSAGMIKSCGYEVEDVRDIGMCSAKDKEIIE 45
Cdd:pfam18480  2 KLLADENLSPRLVELLRDLGHDVLHVRELGLPGASDEEILE 42
 
Name Accession Description Interval E-value
DUF5615 pfam18480
Domain of unknown function (DUF5615); This is a domain of unknown function found in potential ...
 5-45 3.11e-07

Domain of unknown function (DUF5615); This is a domain of unknown function found in potential toxin-antitoxin system component.


Pssm-ID: 465782  Cd Length: 77  Bit Score: 42.12  E-value: 3.11e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1313375804  5 KFLLDADMPRSSAGMIKSCGYEVEDVRDIGMCSAKDKEIIE 45
Cdd:pfam18480  2 KLLADENLSPRLVELLRDLGHDVLHVRELGLPGASDEEILE 42
COG4634 COG4634
Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component [General ...
 4-46 9.74e-06

Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component [General function prediction only];


Pssm-ID: 443672  Cd Length: 113  Bit Score: 38.70  E-value: 9.74e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1313375804   4 IKFLLDADMPRSSAGMIKSCGYEVEDVRDIGMCSAKDKEIIEI 46
Cdd:COG4634     1 MKFLLDENLSPRLVEWLREAGHDVLHVRDLGLPGASDEEILEY 43
 
Name Accession Description Interval E-value
DUF5615 pfam18480
Domain of unknown function (DUF5615); This is a domain of unknown function found in potential ...
 5-45 3.11e-07

Domain of unknown function (DUF5615); This is a domain of unknown function found in potential toxin-antitoxin system component.


Pssm-ID: 465782  Cd Length: 77  Bit Score: 42.12  E-value: 3.11e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1313375804  5 KFLLDADMPRSSAGMIKSCGYEVEDVRDIGMCSAKDKEIIE 45
Cdd:pfam18480  2 KLLADENLSPRLVELLRDLGHDVLHVRELGLPGASDEEILE 42
COG4634 COG4634
Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component [General ...
 4-46 9.74e-06

Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component [General function prediction only];


Pssm-ID: 443672  Cd Length: 113  Bit Score: 38.70  E-value: 9.74e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1313375804   4 IKFLLDADMPRSSAGMIKSCGYEVEDVRDIGMCSAKDKEIIEI 46
Cdd:COG4634     1 MKFLLDENLSPRLVEWLREAGHDVLHVRDLGLPGASDEEILEY 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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