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Conserved domains on  [gi|1308927349|gb|PKO48032|]
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hypothetical protein CVU29_00460 [Betaproteobacteria bacterium HGW-Betaproteobacteria-22]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 27-166 2.69e-24

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 103.15  E-value: 2.69e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  27 AAHADELKDISQLADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVL 106
Cdd:COG3914    76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349 107 YADQGQFDKARKALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQGKL 166
Cdd:COG3914   156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrleeAIAAYRRALELDPDNADAHSNL 220
NTF2_like super family cl09109
Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 ...
 215-318 2.03e-05

Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea and eukaryotes.


The actual alignment was detected with superfamily member pfam13474:

Pssm-ID: 471850  Cd Length: 121  Bit Score: 43.11  E-value: 2.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349 215 IVAAVNNWGQAWANKNLDQYFASYADDFK------PAKGLSRSAWEQQRRDRISSPSKISIELSNIKiISADAENAKV-- 286
Cdd:pfam13474   1 VNALNDAWYEAAAEGDFDALFALWSDDIScigtgaGELWRGREEFRRSWKQDFAQAQGWQFELLDRR-VTVLGDVAWVte 79

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1308927349 287 QFNQKYRAD-KKASIRTNKTLLLKKAGNDWRIK 318
Cdd:pfam13474  80 LLNITAAADgTEAYGPFRLTGVLRRTDGGWKIV 112
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 27-166 2.69e-24

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 103.15  E-value: 2.69e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  27 AAHADELKDISQLADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVL 106
Cdd:COG3914    76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349 107 YADQGQFDKARKALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQGKL 166
Cdd:COG3914   156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrleeAIAAYRRALELDPDNADAHSNL 220
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-170 1.70e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.78  E-value: 1.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  43 GQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALET 122
Cdd:TIGR02917 207 GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQD 286

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1308927349 123 AIKTHPSYATAHENLGDIYAR----MASEAY-DKALQLDTSNSRAQGKLSLIK 170
Cdd:TIGR02917 287 ALKSAPEYLPALLLAGASEYQlgnlEQAYQYlNQILKYAPNSHQARRLLASIQ 339
TPR_12 pfam13424
Tetratricopeptide repeat;
100-158 3.80e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 3.80e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1308927349 100 YNNLAVLYADQGQFDKARKALETAI--------KTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTS 158
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELgryeeALELLERALALAEK 77
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 64-129 1.96e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 48.78  E-value: 1.96e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1308927349  64 QALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPS 129
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
SnoaL_3 pfam13474
SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.
 215-318 2.03e-05

SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.


Pssm-ID: 433238  Cd Length: 121  Bit Score: 43.11  E-value: 2.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349 215 IVAAVNNWGQAWANKNLDQYFASYADDFK------PAKGLSRSAWEQQRRDRISSPSKISIELSNIKiISADAENAKV-- 286
Cdd:pfam13474   1 VNALNDAWYEAAAEGDFDALFALWSDDIScigtgaGELWRGREEFRRSWKQDFAQAQGWQFELLDRR-VTVLGDVAWVte 79

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1308927349 287 QFNQKYRAD-KKASIRTNKTLLLKKAGNDWRIK 318
Cdd:pfam13474  80 LLNITAAADgTEAYGPFRLTGVLRRTDGGWKIV 112
YybH COG4319
Ketosteroid isomerase homolog YybH [General function prediction only];
206-323 1.17e-04

Ketosteroid isomerase homolog YybH [General function prediction only];


Pssm-ID: 443460 [Multi-domain]  Cd Length: 131  Bit Score: 41.28  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349 206 TVTASNHDNIVAAVNNWGQAWANKNLDQYFASYADDF-------KPAKGlsRSAWEQQRRDRISSPSKISIELSNIKIIS 278
Cdd:COG4319     2 KRSAEDEAAIRALLAAFAEAFNAGDADALAALYAEDAvffdpggPPVRG--REAIRAAWAAAFAAGPRVTFEVEDVRVLV 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1308927349 279 AD---AENAKVQFNQKYRADKKASIRTNKTLLLKKAGND-WRIKEEIAS 323
Cdd:COG4319    80 SGdvaVVTGRWRLTGTDPDGEPVELAGRYTLVFRKQADGrWKIVHDHAS 128
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 56-129 1.55e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 42.87  E-value: 1.55e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349  56 IAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPN-LPEPYNNLAVLYADQGQFDKARKALETAIKTHPS 129
Cdd:PRK11788  207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEyLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 97-130 1.39e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 1.39e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1308927349   97 PEPYNNLAVLYADQGQFDKARKALETAIKTHPSY 130
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 27-166 2.69e-24

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 103.15  E-value: 2.69e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  27 AAHADELKDISQLADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVL 106
Cdd:COG3914    76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349 107 YADQGQFDKARKALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQGKL 166
Cdd:COG3914   156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrleeAIAAYRRALELDPDNADAHSNL 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
39-174 4.34e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 95.84  E-value: 4.34e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARK 118
Cdd:COG0457    18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1308927349 119 ALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQGKLSLIKDLFG 174
Cdd:COG0457    98 DYDKALELDPDDAEALYNLGLALLELgrydeAIEAYERALELDPDDADALYNLGIALEKLG 158
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 38-156 6.40e-23

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 92.18  E-value: 6.40e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  38 QLADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKAR 117
Cdd:COG4783    13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEAL 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1308927349 118 KALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLD 156
Cdd:COG4783    93 ALLEKALKLDPEHPEAYLRLARAYRALgrpdeAIAALEKALELD 136
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
56-169 1.58e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 94.30  E-value: 1.58e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  56 IAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHE 135
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1308927349 136 NLGDIYARM-----ASEAYDKALQLDTSNSRAQGKLSLI 169
Cdd:COG0457    81 NLGLALQALgryeeALEDYDKALELDPDDAEALYNLGLA 119
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
57-159 6.22e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 83.81  E-value: 6.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  57 AANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHEN 136
Cdd:COG4785    67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                          90       100
                  ....*....|....*....|....*...
gi 1308927349 137 LGDIYARM-----ASEAYDKALQLDTSN 159
Cdd:COG4785   147 RGIALYYLgryelAIADLEKALELDPND 174
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 48-172 2.18e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 79.66  E-value: 2.18e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  48 ALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTH 127
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1308927349 128 PSYATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQGKLSLIKDL 172
Cdd:COG4235    82 PDNPEALYLLGLAAFQQgdyaeAIAAWQKLLALLPADAPARLLEASIAEA 131
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 48-169 3.15e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.16  E-value: 3.15e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  48 ALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTH 127
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1308927349 128 PSYATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQGKLSLI 169
Cdd:COG2956   175 PDCARALLLLAELYLEQgdyeeAIAALERALEQDPDYLPALPRLAEL 221
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 39-160 1.14e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 78.62  E-value: 1.14e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARK 118
Cdd:COG2956   120 YEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIA 199

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1308927349 119 ALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTSNS 160
Cdd:COG2956   200 ALERALEQDPDYLPALPRLAELYEKLgdpeeALELLRKALELDPSDD 246
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 56-177 1.41e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 80.42  E-value: 1.41e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  56 IAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHE 135
Cdd:COG3914    71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1308927349 136 NLGDIYARM-----ASEAYDKALQLDTSNSRAQGKLSLIkdLFGTGN 177
Cdd:COG3914   151 NLGEALRRLgrleeAIAALRRALELDPDNAEALNNLGNA--LQDLGR 195
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 43-169 2.30e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 77.85  E-value: 2.30e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  43 GQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALET 122
Cdd:COG2956    22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1308927349 123 AIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQGKLSLI 169
Cdd:COG2956   102 LLELDPDDAEALRLLAEIYEQEgdwekAIEVLERLLKLGPENAHAYCELAEL 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-169 6.16e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 76.31  E-value: 6.16e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  42 MGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALE 121
Cdd:COG2956    55 RGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1308927349 122 TAIKTHPSYATAHENLGDIYAR-----MASEAYDKALQLDTSNSRAQGKLSLI 169
Cdd:COG2956   135 RLLKLGPENAHAYCELAELYLEqgdydEAIEALEKALKLDPDCARALLLLAEL 187
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 63-169 2.08e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 72.15  E-value: 2.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  63 AQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHENLGDIYA 142
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1308927349 143 RM-----ASEAYDKALQLDTSNSRAQGKLSLI 169
Cdd:COG4783    84 KAgdydeALALLEKALKLDPEHPEAYLRLARA 115
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 27-156 3.71e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.92  E-value: 3.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  27 AAHADELKDISQLADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVL 106
Cdd:COG5010    18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349 107 YADQGQFDKARKALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLD 156
Cdd:COG5010    98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLgqddeAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
72-161 6.51e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 66.35  E-value: 6.51e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  72 LLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARkALETAIKTHPSYATAHENLGDIYARM-----AS 146
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELgdydeAL 79

                          90
                  ....*....|....*
gi 1308927349 147 EAYDKALQLDTSNSR 161
Cdd:COG3063    80 AYLERALELDPSALR 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 67-169 1.25e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 69.76  E-value: 1.25e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  67 FMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHENLGDIYARM-- 144
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAgl 91

                          90       100
                  ....*....|....*....|....*...
gi 1308927349 145 ---ASEAYDKALQLDTSNSRAQGKLSLI 169
Cdd:COG2956    92 ldrAEELLEKLLELDPDDAEALRLLAEI 119
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 38-155 3.48e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.60  E-value: 3.48e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  38 QLADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKAR 117
Cdd:COG2956   153 LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEAL 232

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1308927349 118 KALETAIKTHPSyATAHENLGDIYARMasEAYDKALQL 155
Cdd:COG2956   233 ELLRKALELDPS-DDLLLALADLLERK--EGLEAALAL 267
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
39-129 5.94e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 63.65  E-value: 5.94e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKtFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARK 118
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|.
gi 1308927349 119 ALETAIKTHPS 129
Cdd:COG3063    81 YLERALELDPS 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 39-130 1.04e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.44  E-value: 1.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARK 118
Cdd:COG4783    48 LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127

                          90
                  ....*....|..
gi 1308927349 119 ALETAIKTHPSY 130
Cdd:COG4783   128 ALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
39-156 1.96e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 1.96e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARK 118
Cdd:COG0457    86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1308927349 119 ALETAIKTHPSYATAHENLGDIYARMASEAYDKALQLD 156
Cdd:COG0457   166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 39-128 5.90e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 62.67  E-value: 5.90e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARK 118
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                          90
                  ....*....|
gi 1308927349 119 ALETAIKTHP 128
Cdd:COG5010   144 ALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 81-169 7.25e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.86  E-value: 7.25e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  81 EAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQL 155
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAgdteeAEELLERALAL 80

                          90
                  ....*....|....
gi 1308927349 156 DTSNSRAQGKLSLI 169
Cdd:COG4235    81 DPDNPEALYLLGLA 94
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 38-133 7.87e-11

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 58.46  E-value: 7.87e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  38 QLADMGQTAVALDRVNTFIAANPKN---AQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPN---LPEPYNNLAVLYADQG 111
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81

                          90       100
                  ....*....|....*....|..
gi 1308927349 112 QFDKARKALETAIKTHPSYATA 133
Cdd:COG1729    82 DYDKARATLEELIKKYPDSEAA 103
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
39-154 8.89e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.00  E-value: 8.89e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARK 118
Cdd:COG4785    83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIA 162

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1308927349 119 ALETAIKTHPSYATAHENLGDIYARMASEAYDKALQ 154
Cdd:COG4785   163 DLEKALELDPNDPERALWLYLAERKLDPEKALALLL 198
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 38-169 1.90e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.38  E-value: 1.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  38 QLADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKAR 117
Cdd:COG3914    19 AAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEAL 98

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1308927349 118 KALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQGKLSLI 169
Cdd:COG3914    99 ALYRRALALNPDNAEALFNLGNLLLALgrleeALAALRRALALNPDFAEAYLNLGEA 155
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
106-169 6.45e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.78  E-value: 6.45e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1308927349 106 LYADQGQFDKARKALETAIKTHPSYATAHENLGDIYARM----ASEAYDKALQLDTSNSRAQGKLSLI 169
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQgrydEAIALEKALKLDPNNAEALLNLAEL 68
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 73-155 7.59e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.99  E-value: 7.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  73 LAEQGRRDEAIKTFTEVTEKFPN---LPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHE---NLGDIYARMas 146
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLEL-- 80


                  ....*....
gi 1308927349 147 EAYDKALQL 155
Cdd:COG1729    81 GDYDKARAT 89
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 39-163 1.57e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 52.69  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARK 118
Cdd:COG3914   156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1308927349 119 ALEtaiktHPSYATAHENLGDIYARMASEAYDKALQLDTSNSRAQ 163
Cdd:COG3914   236 FEE-----LLAALARGPSELSPFALLYLPDDDPAELLALARAWAQ 275
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-170 1.70e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.78  E-value: 1.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  43 GQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALET 122
Cdd:TIGR02917 207 GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQD 286

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1308927349 123 AIKTHPSYATAHENLGDIYAR----MASEAY-DKALQLDTSNSRAQGKLSLIK 170
Cdd:TIGR02917 287 ALKSAPEYLPALLLAGASEYQlgnlEQAYQYlNQILKYAPNSHQARRLLASIQ 339
TPR_12 pfam13424
Tetratricopeptide repeat;
100-158 3.80e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 3.80e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1308927349 100 YNNLAVLYADQGQFDKARKALETAI--------KTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTS 158
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELgryeeALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 100-169 4.46e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.80  E-value: 4.46e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349 100 YNNLAVLYADQGQFDKARKALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQGKLSLI 169
Cdd:COG5010    57 ESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSgdkdeAKEYYEKALALSPDNPNAYSNLAAL 131
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 36-157 6.97e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 49.91  E-value: 6.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  36 ISQLADMGQTAVALDRVNTFIAANPknAQALFMkgvLLAE--QGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQF 113
Cdd:COG3071   200 ARALIALGDHDEAERLLREALKRQW--DPRLVR---LYGRlqGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLW 274

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1308927349 114 DKARKALETAIKTHPSyATAHENLGDIYARM-----ASEAYDKALQLDT 157
Cdd:COG3071   275 GKAREYLEAALALRPS-AEAYAELARLLEQLgdpeeAAEHYRKALALAL 322
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 24-134 7.17e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.85  E-value: 7.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  24 AFTAAHADELKDISQLADMGQTAVALDR-------VNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNL 96
Cdd:TIGR02917 147 SYEQALAIDPRSLYAKLGLAQLALAENRfdearalIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1308927349  97 PEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAH 134
Cdd:TIGR02917 227 IAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAH 264
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-178 8.48e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.47  E-value: 8.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  43 GQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQgqfdKARKAL-- 120
Cdd:TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL----KDPRALey 825

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1308927349 121 -ETAIKTHPSYATAHENLGDIYARmaSEAYDKALQL-----DTSNSRAQGKLSLIKDLFGTGNK 178
Cdd:TIGR02917 826 aERALKLAPNIPAILDTLGWLLVE--KGEADRALPLlrkavNIAPEAAAIRYHLALALLATGRK 887
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 39-127 9.47e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 9.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEpYNNLAVLYADQGQFDKARK 118
Cdd:COG2956   188 YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALA 266


                  ....*....
gi 1308927349 119 ALETAIKTH 127
Cdd:COG2956   267 LLERQLRRH 275
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
24-135 1.63e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 48.34  E-value: 1.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  24 AFTAAHADELKDISQLA----DMGQTAVALDRVNTFIAANP--KNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNlP 97
Cdd:COG4700   115 ALTGIFADDPHILLGLAqalfELGRYAEALETLEKLIAKNPdfKSSDAHLLYARALEALGDLEAAEAELEALARRYSG-P 193

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1308927349  98 EPYNNLAVLYADQGQFDKARKALETAIKThPSYATAHE 135
Cdd:COG4700   194 EARYRYAKFLARQGRTAEAKELLEEILDE-AKHMPKHY 230
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 64-129 1.96e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 48.78  E-value: 1.96e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1308927349  64 QALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPS 129
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 36-163 2.46e-06

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 47.54  E-value: 2.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  36 ISQLADMGQTAVALDRVNTFIAANPKNAQALFMkGVLLA----EQGRRDEAIKTFTEVTE--KFPNLPEPYN-NLAVLYA 108
Cdd:COG2976    60 LLEALAAGDAAAAAAAAEKLIDDYGGTAYAALA-ALLLAkaavDAGDLDKAAAQLQWVLDnaKDPALKALARlRLARVLL 138

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1308927349 109 DQGQFDKARKALETAIKthPSY-ATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQ 163
Cdd:COG2976   139 AQKKYDEALATLDAVKP--EAFaALYAELRGDILLAQgdkaeARAAYQKALAALPEDAPLR 197
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 42-153 3.56e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.54  E-value: 3.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  42 MGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALE 121
Cdd:TIGR02917 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE 421

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1308927349 122 TAIKTHPSYATAHENLgdIYARMASEAYDKAL 153
Cdd:TIGR02917 422 TAAQLDPELGRADLLL--ILSYLRSGQFDKAL 451
TPR_11 pfam13414
TPR repeat;
106-144 4.48e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 42.84  E-value: 4.48e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1308927349 106 LYADQGQFDKARKALETAIKTHPSYATAHENLGDIYARM 144
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 31-166 4.51e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 4.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  31 DELKDISQLADM----GQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVL 106
Cdd:TIGR02917 497 DFFPAAANLARIdiqeGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349 107 YADQGQFDKARKALETAIKTHPSYATAHENLGDIY-----ARMASEAYDKALQLDTSNSRAQGKL 166
Cdd:TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQlaagdLNKAVSSFKKLLALQPDSALALLLL 641
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 102-160 7.08e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.85  E-value: 7.08e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1308927349 102 NLAVLYADQGQFDKARKALETAIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTSNS 160
Cdd:cd24142     5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELgdveeAREVLLRAIELDPDGG 68
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-155 1.23e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 1.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  43 GQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALET 122
Cdd:TIGR02917 581 GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1308927349 123 AIKTHPSYATAHENLGDIYarMASEAYDKALQL 155
Cdd:TIGR02917 661 ALELKPDNTEAQIGLAQLL--LAAKRTESAKKI 691
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 28-167 1.25e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  28 AHADELKDISQLAdMGQTAVALDRVNTFIAANPKNAQAlfmkGVLLAE----QGRRDEAIKTFTEVTEKFPNLPEPYNNL 103
Cdd:TIGR02917 397 AAARTQLGISKLS-QGDPSEAIADLETAAQLDPELGRA----DLLLILsylrSGQFDKALAAAKKLEKKQPDNASLHNLL 471

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1308927349 104 AVLYADQGQFDKARKALETAIKTHPSYATAHENLGDIYAR-----MASEAYDKALQLDTSNSRAQGKLS 167
Cdd:TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQegnpdDAIQRFEKVLTIDPKNLRAILALA 540
SnoaL_3 pfam13474
SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.
 215-318 2.03e-05

SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.


Pssm-ID: 433238  Cd Length: 121  Bit Score: 43.11  E-value: 2.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349 215 IVAAVNNWGQAWANKNLDQYFASYADDFK------PAKGLSRSAWEQQRRDRISSPSKISIELSNIKiISADAENAKV-- 286
Cdd:pfam13474   1 VNALNDAWYEAAAEGDFDALFALWSDDIScigtgaGELWRGREEFRRSWKQDFAQAQGWQFELLDRR-VTVLGDVAWVte 79

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1308927349 287 QFNQKYRAD-KKASIRTNKTLLLKKAGNDWRIK 318
Cdd:pfam13474  80 LLNITAAADgTEAYGPFRLTGVLRRTDGGWKIV 112
TPR_19 pfam14559
Tetratricopeptide repeat;
76-140 3.37e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 41.03  E-value: 3.37e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349  76 QGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHENLGDI 140
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR_12 pfam13424
Tetratricopeptide repeat;
63-125 5.43e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.83  E-value: 5.43e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1308927349  63 AQALFMKGVLLAEQGRRDEAIKTFTEVTE--------KFPNLPEPYNNLAVLYADQGQFDKARKALETAIK 125
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
56-185 6.63e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 43.72  E-value: 6.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  56 IAANPKNAQALfmkGVLLAEQGRRDEAIKTFTEVTEK-FPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAH 134
Cdd:COG4700    85 FADTVQNRVRL---ADALLELGRYDEAIELYEEALTGiFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSD 161

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1308927349 135 ENLgdIYARM--ASEAYDKAL----QLDTSNSRAQGKLSLIKDLFGTGNktTIAAKE 185
Cdd:COG4700   162 AHL--LYARAleALGDLEAAEaeleALARRYSGPEARYRYAKFLARQGR--TAEAKE 214
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 67-131 8.28e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.01  E-value: 8.28e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1308927349  67 FMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEP---YNNLAVLYADQGQFDKARKALETAIKTHPSYA 131
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESPDAaaaLLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 70-130 1.01e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 43.82  E-value: 1.01e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349  70 GVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAI----KTHPSY 130
Cdd:TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIelekETKPMY 504
YybH COG4319
Ketosteroid isomerase homolog YybH [General function prediction only];
206-323 1.17e-04

Ketosteroid isomerase homolog YybH [General function prediction only];


Pssm-ID: 443460 [Multi-domain]  Cd Length: 131  Bit Score: 41.28  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349 206 TVTASNHDNIVAAVNNWGQAWANKNLDQYFASYADDF-------KPAKGlsRSAWEQQRRDRISSPSKISIELSNIKIIS 278
Cdd:COG4319     2 KRSAEDEAAIRALLAAFAEAFNAGDADALAALYAEDAvffdpggPPVRG--REAIRAAWAAAFAAGPRVTFEVEDVRVLV 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1308927349 279 AD---AENAKVQFNQKYRADKKASIRTNKTLLLKKAGND-WRIKEEIAS 323
Cdd:COG4319    80 SGdvaVVTGRWRLTGTDPDGEPVELAGRYTLVFRKQADGrWKIVHDHAS 128
DUF4440 pfam14534
Domain of unknown function (DUF4440);
215-317 1.20e-04

Domain of unknown function (DUF4440);


Pssm-ID: 434023 [Multi-domain]  Cd Length: 107  Bit Score: 40.84  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349 215 IVAAVNNWGQAWANKNLDQYFASYADDFK--PAKGLSRSAWEQQRRDRISSPSKISIELSNIKIIsADAENAKVQFNQKY 292
Cdd:pfam14534   1 IRALEEALLEALVAGDPAALAALLAPDFVlvGPSGPVLDKDEILEALASGGLDYSSIELEDEKVR-VLGDTAVVRGRVTV 79

                          90       100
                  ....*....|....*....|....*...
gi 1308927349 293 RA---DKKASIRTNKTLLLKKAGNDWRI 317
Cdd:pfam14534  80 TGrgdGEPVTVRGRFTSVWKKEGGGWKI 107
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 56-129 1.55e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 42.87  E-value: 1.55e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349  56 IAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPN-LPEPYNNLAVLYADQGQFDKARKALETAIKTHPS 129
Cdd:PRK11788  207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEyLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 58-169 1.89e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 1.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  58 ANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHENL 137
Cdd:TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1308927349 138 GDiYARM------ASEAYDKALQLDTSNSRAQGKLSLI 169
Cdd:TIGR02917 200 GD-LLLSlgnielALAAYRKAIALRPNNIAVLLALATI 236
TPR_1 pfam00515
Tetratricopeptide repeat;
100-130 2.58e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 2.58e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1308927349 100 YNNLAVLYADQGQFDKARKALETAIKTHPSY 130
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 39-95 3.02e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 3.02e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1308927349  39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPN 95
Cdd:COG4235    61 LLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
TPR1 COG4649
TPR-like repeat domain [Function unknown];
38-138 3.56e-04

TPR-like repeat domain [Function unknown];


Pssm-ID: 443687 [Multi-domain]  Cd Length: 222  Bit Score: 41.00  E-value: 3.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  38 QLADMGQTAVALDRVNTFIAANPKNAQAL--FMKGVLLAEQGRRDEAIKTFTEVTEKfPNLPEPYNNLAVLYA-----DQ 110
Cdd:COG4649    68 ELAEAGDAAEAAAALAALAADGPGGYAALarLRAAALLAQAGDTAAAVAAYDAVAAD-ASAPPLLRDLARLRAalllvDT 146

                          90       100
                  ....*....|....*....|....*....
gi 1308927349 111 GQFDKARKALETAIK-THPSYATAHENLG 138
Cdd:COG4649   147 GDPADVRARLEPLAApGNPWRHSARELLA 175
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 97-128 8.30e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.35  E-value: 8.30e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1308927349  97 PEPYNNLAVLYADQGQFDKARKALETAIKTHP 128
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
TPR_17 pfam13431
Tetratricopeptide repeat;
85-118 9.10e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 36.37  E-value: 9.10e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1308927349  85 TFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARK 118
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_6 pfam13174
Tetratricopeptide repeat;
64-95 9.15e-04

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 36.29  E-value: 9.15e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1308927349  64 QALFMKGVLLAEQGRRDEAIKTFTEVTEKFPN 95
Cdd:pfam13174   1 DALLKLALAYLELGDTDEAKEALERLIKKYPD 32
TPR_10 pfam13374
Tetratricopeptide repeat;
100-127 9.69e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 9.69e-04
                          10        20
                  ....*....|....*....|....*...
gi 1308927349 100 YNNLAVLYADQGQFDKARKALETAIKTH 127
Cdd:pfam13374   5 LNNLANALRAQGRYDEAEELLEEALAIR 32
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-195 9.89e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 9.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  43 GQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALET 122
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1308927349 123 AIKTHPSYATAHENLGDIyaRMASEAYDKALQ-LDTSNSRAQGKLS--LIKDLFGTGNKTTIAAKEPTKPAVSKDP 195
Cdd:TIGR02917 219 AIALRPNNIAVLLALATI--LIEAGEFEEAEKhADALLKKAPNSPLahYLKALVDFQKKNYEDARETLQDALKSAP 292
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 17-162 1.10e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  17 FITSLTFAFTAAHADELKDISQLAdMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNL 96
Cdd:TIGR02917 284 LQDALKSAPEYLPALLLAGASEYQ-LGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD 362

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1308927349  97 PEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHENLGDIY-----ARMASEAYDKALQLDTSNSRA 162
Cdd:TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKlsqgdPSEAIADLETAAQLDPELGRA 433
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 63-138 1.21e-03

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 39.87  E-value: 1.21e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1308927349  63 AQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHENLG 138
Cdd:PRK11189   64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 97-130 1.39e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 1.39e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1308927349   97 PEPYNNLAVLYADQGQFDKARKALETAIKTHPSY 130
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_11 pfam13414
TPR repeat;
70-111 1.50e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.91  E-value: 1.50e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1308927349  70 GVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQG 111
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_21 pfam09976
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
 38-166 1.70e-03

Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.


Pssm-ID: 430959 [Multi-domain]  Cd Length: 194  Bit Score: 38.72  E-value: 1.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  38 QLADMGQTAVALDRVNTFIAANPKNAQALfMKGVLLA----EQGRRDEAIKTFTEVTEKFPNlpEPYNN-----LAVLYA 108
Cdd:pfam09976  48 EAVAAGDAAKAQAAAAQLKDEYGGTGYAA-LAALLLAkaavEAGDLAAAKAQLEWVADNAKD--EALKAlarlrLARVLL 124

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1308927349 109 DQGQFDKARKALETaiKTHPSYATAHENL-GDIYARM-----ASEAYDKALQ-LDTSNSRA--QGKL 166
Cdd:pfam09976 125 AQGKYDEALKTLDA--VTPAAFAALYAELrGDILVAQgktdeARAAYQAALDaLDAGAPRPllQMKL 189
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 102-155 1.81e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.16  E-value: 1.81e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1308927349 102 NLAVLYADQGQFDKARKALETAIK---THPSYATAHENLGDIYARmaSEAYDKALQL 155
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALArfpESPDAAAALLLLGLAALR--QGRLAEAAAA 56
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 46-121 1.96e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.07  E-value: 1.96e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1308927349  46 AVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALE 121
Cdd:TIGR02917 820 PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD 895
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 59-133 2.19e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 2.19e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308927349  59 NPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATA 133
Cdd:TIGR02917 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA 739
TPR_14 pfam13428
Tetratricopeptide repeat;
97-140 2.24e-03

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 35.48  E-value: 2.24e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1308927349  97 PEPYNNLAVLYADQGQFDKARKALETAIKTHPSYATAHENLGDI 140
Cdd:pfam13428   1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-170 2.31e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 2.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  43 GQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALET 122
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSP 354

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1308927349 123 AIKTHPSYATAHENLGDIYARM-----ASEAYDKALQLDTSNSRAQGKLSLIK 170
Cdd:TIGR02917 355 ALGLDPDDPAALSLLGEAYLALgdfekAAEYLAKATELDPENAAARTQLGISK 407
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 39-97 3.03e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.77  E-value: 3.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1308927349  39 LADMGQTAVALDRVNTFIAAN---PKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLP 97
Cdd:pfam13432   7 ALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 39-162 3.34e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 39.30  E-value: 3.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349   39 LADMGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNlpePYNN-------------LAV 105
Cdd:PRK11447   279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH---SSNRdkwesllkvnrywLLI 355

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1308927349  106 LYADQ----GQFDKARKALETAIKTHPSYATAHENLGDI-YAR----MASEAYDKALQLDTSNSRA 162
Cdd:PRK11447   356 QQGDAalkaNNLAQAERLYQQARQVDNTDSYAVLGLGDVaMARkdyaAAERYYQQALRMDPGNTNA 421
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 42-153 3.98e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 38.81  E-value: 3.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  42 MGQTAVALDRVNTFIAANPKNAQALFMKGVLLAEQGRRDEAIKTFTEVTEKFPNLPEPYNNLAVLYADQGQFDKARKALE 121
Cdd:TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1308927349 122 TAIKTHPSYATAHENLGDIYARMASEAYDKAL 153
Cdd:TIGR00990 424 KSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT 455
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 42-123 5.86e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 37.55  E-value: 5.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  42 MGQTAVALDRVNTFIAANPKN---AQALFMKGVLLAEQG---RRD-----EAIKTFTEVTEKFPNlpEPYNNLAVLYADQ 110
Cdd:COG4105    82 QGDYEEAIAAADRFIKLYPNSpnaDYAYYLRGLSYYEQSpdsDRDqtstrKAIEAFQELINRYPD--SEYAEDAKKRIDE 159

                          90
                  ....*....|...
gi 1308927349 111 GQFDKARKALETA 123
Cdd:COG4105   160 LRDKLARKELEVA 172
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
81-174 7.49e-03

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 37.91  E-value: 7.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308927349  81 EAIKTFTEVTEKFPNLPEPYNNLAVLY---ADQGQFDKARkALETAIkthpsyatahenlgdiyarmasEAYDKALQLDT 157
Cdd:PRK12370  279 QALKLLTQCVNMSPNSIAPYCALAECYlsmAQMGIFDKQN-AMIKAK----------------------EHAIKATELDH 335

                          90
                  ....*....|....*..
gi 1308927349 158 SNSRAQGKLSLIKDLFG 174
Cdd:PRK12370  336 NNPQALGLLGLINTIHS 352
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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