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Conserved domains on  [gi|1308784032|gb|PKN28000|]
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phospho-N-acetylmuramoyl-pentapeptide-transferase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22]

Protein Classification

phospho-N-acetylmuramoyl-pentapeptide-transferase( domain architecture ID 10160594)

phospho-N-acetylmuramoyl-pentapeptide-transferase catalyzes the initial step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; it transfers peptidoglycan precursor phospho-MurNAc-pentapeptide from UDP-MurNAc-pentapeptide onto the lipid carrier undecaprenyl phosphate, to produce undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide, known as lipid I

EC:  2.7.8.13
Gene Ontology:  GO:0046872|GO:0008963|GO:0009252
PubMed:  7734839|11024259
SCOP:  3002333

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GT_MraY cd06852
Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the ...
64-370 3.23e-105

Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.


:

Pssm-ID: 133462  Cd Length: 280  Bit Score: 310.96  E-value: 3.23e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  64 GPETHFVKQGTPTMGGTLILFALVLPTILWADLSNVYVWMVLTITALYGVLGFLDDYLKVAKRNSKGLAGRYKLFFQFLV 143
Cdd:cd06852     1 GPKSHLKKAGTPTMGGILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQFLI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 144 AGGMLWYVFGTEATGlslevrTKLALPFISVdaYPVLPLVLFILLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMI 223
Cdd:cd06852    81 AIVFALLLYYFNGSG------TLITLPFFKN--GLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAI 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 224 LAYAHGavfwgkpvaeylkiihlpGVEELIIYCGAMIGAGIGFLWYNTYPASVFMGDVGSLALGGGLGTLAVLTKNEVVL 303
Cdd:cd06852   153 IAYLAG------------------NAVFLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLL 214
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1308784032 304 VIAGGIFVMEALSVMIQVAYFKISgGKRIFLMAPIHHHFEKKGWAEPKVIVRFWVISFILALFAVVT 370
Cdd:cd06852   215 LIIGGVFVIEALSVILQVGSFKLT-GKRIFKMAPLHHHFELKGWSETKVVVRFWIISLILALIGLLL 280
 
Name Accession Description Interval E-value
GT_MraY cd06852
Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the ...
64-370 3.23e-105

Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.


Pssm-ID: 133462  Cd Length: 280  Bit Score: 310.96  E-value: 3.23e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  64 GPETHFVKQGTPTMGGTLILFALVLPTILWADLSNVYVWMVLTITALYGVLGFLDDYLKVAKRNSKGLAGRYKLFFQFLV 143
Cdd:cd06852     1 GPKSHLKKAGTPTMGGILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQFLI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 144 AGGMLWYVFGTEATGlslevrTKLALPFISVdaYPVLPLVLFILLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMI 223
Cdd:cd06852    81 AIVFALLLYYFNGSG------TLITLPFFKN--GLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAI 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 224 LAYAHGavfwgkpvaeylkiihlpGVEELIIYCGAMIGAGIGFLWYNTYPASVFMGDVGSLALGGGLGTLAVLTKNEVVL 303
Cdd:cd06852   153 IAYLAG------------------NAVFLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLL 214
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1308784032 304 VIAGGIFVMEALSVMIQVAYFKISgGKRIFLMAPIHHHFEKKGWAEPKVIVRFWVISFILALFAVVT 370
Cdd:cd06852   215 LIIGGVFVIEALSVILQVGSFKLT-GKRIFKMAPLHHHFELKGWSETKVVVRFWIISLILALIGLLL 280
mraY TIGR00445
phospho-N-acetylmuramoyl-pentapeptide-transferase; Involved in peptidoglycan biosynthesis, the ...
40-373 2.31e-101

phospho-N-acetylmuramoyl-pentapeptide-transferase; Involved in peptidoglycan biosynthesis, the enzyme catalyzes the first of the lipid cycle reactions. Also known as Muramoyl-Pentapeptide Transferase (murX). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 161884  Cd Length: 321  Bit Score: 302.44  E-value: 2.31e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  40 SFLLSPWFIRRLQSQQLAQPIRSDGPETHFVKQGTPTMGGTLILFALVLPTILWADLSNVYVWMVLTITALYGVLGFLDD 119
Cdd:TIGR00445   1 SLLLGPKVIPMLKKLKAGQVIRSDGPKSHLKKKGTPTMGGIMIVFAIIVSTVLWAQLGNPYVLLVLFVLLGYGFIGFVDD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 120 YLKVAKRNSKGLAGRYKLFFQFLVAGG--MLWYVFGTEatglslevrTKLALPFISvDAYPVLPLvLFILLSMVVIVGAS 197
Cdd:TIGR00445  81 YRKIKRKSNKGLTAKQKLFGQIIIALIfcTWLYYYGPD---------TFIYIPFIK-DFMFDLGL-FYILLAYFVLVGTS 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 198 NAVNLTDGLDGLAIGPVILNAFVFMILAYAHGAVFWgkpvAEYLKIIHLPGVEELIIYCGAMIGAGIGFLWYNTYPASVF 277
Cdd:TIGR00445 150 NAVNLTDGLDGLAIGPSAIAFGALAILAWATGNANF----AKYLHIPYLKDSGELVIFCTALVGASLGFLWFNAYPAKVF 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 278 MGDVGSLALGGGLGTLAVLTKNEVVLVIAGGIFVMEALSVMIQVAYFKISgGKRIFLMAPIHHHFEKKGWAEPKVIVRFW 357
Cdd:TIGR00445 226 MGDTGSLALGGALGAVAILTKNEILLVIMGGVFVIETLSVILQVGSYKTT-KKRIFKMAPIHHHFELKGWSEPRVVVRFW 304
                         330
                  ....*....|....*.
gi 1308784032 358 VISFILALFAVVTLKL 373
Cdd:TIGR00445 305 IISLLLALVALATLKV 320
Rfe COG0472
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate ...
28-357 5.53e-68

UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440240  Cd Length: 288  Bit Score: 215.76  E-value: 5.53e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  28 RVVLSTLTALLISFLLSPWFIRRLQSQQLAqpirsDGPETHFV-KQGTPTMGGTLILFALVLPTILWADLSNVYVWMVLT 106
Cdd:COG0472     2 RLLLAFLLAFLLSLLLTPLLIRLARRLGLV-----DDPNERKShKRPTPRMGGIAIFLGFLLALLLLALLSNPELLLLLL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 107 ITALYGVLGFLDDYlkvakrnsKGLAGRYKLFFQFLVAGGMLWYVFgteatglsleVRTKLALPFISVDAYPVLplvlFI 186
Cdd:COG0472    77 GALLLGLIGFLDDL--------LGLSARQKLLGQLLAALLLVLLLL----------RITSLTIPFFGLLDLGWL----YI 134
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 187 LLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMILAYAHGAVfwgkpvaeylkiihlpgveELIIYCGAMIGAGIGF 266
Cdd:COG0472   135 PLTVFWIVGVSNAVNLTDGLDGLAAGVSLIAALALAIIAYLAGQG-------------------ELALLAAALAGALLGF 195
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 267 LWYNTYPASVFMGDVGSLALGGGLGTLAVLTKNE----VVLVIAGGIFVMEALSVMIQVAYFkisgGKRIFL--MAPIHH 340
Cdd:COG0472   196 LWFNFPPAKIFMGDTGSLFLGFALAALAILGRQEgaslLLLLLILGVPVVDTLSVILQRVLR----GKRIFKadRAHLHH 271
                         330
                  ....*....|....*..
gi 1308784032 341 HFEKKGWAEPKVIVRFW 357
Cdd:COG0472   272 HLELLGWSERQVVLRFW 288
Glycos_transf_4 pfam00953
Glycosyl transferase family 4;
102-280 8.91e-20

Glycosyl transferase family 4;


Pssm-ID: 460008  Cd Length: 158  Bit Score: 84.96  E-value: 8.91e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 102 WMVLTITALYGVLGFLDDYlkvakrnsKGLAGRYKLFFQFLVAGGMLWYVFGTEATglslevrtkLALPFISVDAYpvLP 181
Cdd:pfam00953   1 LGLLLGALLIGLIGLIDDL--------LGLSARIKLLLQALAALILLVLGGIGLTS---------LGLPFGGGSLE--LG 61
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 182 LVLFILLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMILAYahgavfwgkpvaeylkiihLPGVEELIIYCGAMIG 261
Cdd:pfam00953  62 PWLSILLTLFAIVGLTNAVNFIDGLDGLAGGVAIIAALALGIIAY-------------------LLGNLELALLSLALLG 122
                         170
                  ....*....|....*....
gi 1308784032 262 AGIGFLWYNTYPASVFMGD 280
Cdd:pfam00953 123 ALLGFLPFNFYPAKIFMGD 141
 
Name Accession Description Interval E-value
GT_MraY cd06852
Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the ...
64-370 3.23e-105

Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.


Pssm-ID: 133462  Cd Length: 280  Bit Score: 310.96  E-value: 3.23e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  64 GPETHFVKQGTPTMGGTLILFALVLPTILWADLSNVYVWMVLTITALYGVLGFLDDYLKVAKRNSKGLAGRYKLFFQFLV 143
Cdd:cd06852     1 GPKSHLKKAGTPTMGGILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQFLI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 144 AGGMLWYVFGTEATGlslevrTKLALPFISVdaYPVLPLVLFILLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMI 223
Cdd:cd06852    81 AIVFALLLYYFNGSG------TLITLPFFKN--GLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAI 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 224 LAYAHGavfwgkpvaeylkiihlpGVEELIIYCGAMIGAGIGFLWYNTYPASVFMGDVGSLALGGGLGTLAVLTKNEVVL 303
Cdd:cd06852   153 IAYLAG------------------NAVFLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLL 214
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1308784032 304 VIAGGIFVMEALSVMIQVAYFKISgGKRIFLMAPIHHHFEKKGWAEPKVIVRFWVISFILALFAVVT 370
Cdd:cd06852   215 LIIGGVFVIEALSVILQVGSFKLT-GKRIFKMAPLHHHFELKGWSETKVVVRFWIISLILALIGLLL 280
mraY TIGR00445
phospho-N-acetylmuramoyl-pentapeptide-transferase; Involved in peptidoglycan biosynthesis, the ...
40-373 2.31e-101

phospho-N-acetylmuramoyl-pentapeptide-transferase; Involved in peptidoglycan biosynthesis, the enzyme catalyzes the first of the lipid cycle reactions. Also known as Muramoyl-Pentapeptide Transferase (murX). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 161884  Cd Length: 321  Bit Score: 302.44  E-value: 2.31e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  40 SFLLSPWFIRRLQSQQLAQPIRSDGPETHFVKQGTPTMGGTLILFALVLPTILWADLSNVYVWMVLTITALYGVLGFLDD 119
Cdd:TIGR00445   1 SLLLGPKVIPMLKKLKAGQVIRSDGPKSHLKKKGTPTMGGIMIVFAIIVSTVLWAQLGNPYVLLVLFVLLGYGFIGFVDD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 120 YLKVAKRNSKGLAGRYKLFFQFLVAGG--MLWYVFGTEatglslevrTKLALPFISvDAYPVLPLvLFILLSMVVIVGAS 197
Cdd:TIGR00445  81 YRKIKRKSNKGLTAKQKLFGQIIIALIfcTWLYYYGPD---------TFIYIPFIK-DFMFDLGL-FYILLAYFVLVGTS 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 198 NAVNLTDGLDGLAIGPVILNAFVFMILAYAHGAVFWgkpvAEYLKIIHLPGVEELIIYCGAMIGAGIGFLWYNTYPASVF 277
Cdd:TIGR00445 150 NAVNLTDGLDGLAIGPSAIAFGALAILAWATGNANF----AKYLHIPYLKDSGELVIFCTALVGASLGFLWFNAYPAKVF 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 278 MGDVGSLALGGGLGTLAVLTKNEVVLVIAGGIFVMEALSVMIQVAYFKISgGKRIFLMAPIHHHFEKKGWAEPKVIVRFW 357
Cdd:TIGR00445 226 MGDTGSLALGGALGAVAILTKNEILLVIMGGVFVIETLSVILQVGSYKTT-KKRIFKMAPIHHHFELKGWSEPRVVVRFW 304
                         330
                  ....*....|....*.
gi 1308784032 358 VISFILALFAVVTLKL 373
Cdd:TIGR00445 305 IISLLLALVALATLKV 320
Rfe COG0472
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate ...
28-357 5.53e-68

UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440240  Cd Length: 288  Bit Score: 215.76  E-value: 5.53e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  28 RVVLSTLTALLISFLLSPWFIRRLQSQQLAqpirsDGPETHFV-KQGTPTMGGTLILFALVLPTILWADLSNVYVWMVLT 106
Cdd:COG0472     2 RLLLAFLLAFLLSLLLTPLLIRLARRLGLV-----DDPNERKShKRPTPRMGGIAIFLGFLLALLLLALLSNPELLLLLL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 107 ITALYGVLGFLDDYlkvakrnsKGLAGRYKLFFQFLVAGGMLWYVFgteatglsleVRTKLALPFISVDAYPVLplvlFI 186
Cdd:COG0472    77 GALLLGLIGFLDDL--------LGLSARQKLLGQLLAALLLVLLLL----------RITSLTIPFFGLLDLGWL----YI 134
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 187 LLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMILAYAHGAVfwgkpvaeylkiihlpgveELIIYCGAMIGAGIGF 266
Cdd:COG0472   135 PLTVFWIVGVSNAVNLTDGLDGLAAGVSLIAALALAIIAYLAGQG-------------------ELALLAAALAGALLGF 195
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 267 LWYNTYPASVFMGDVGSLALGGGLGTLAVLTKNE----VVLVIAGGIFVMEALSVMIQVAYFkisgGKRIFL--MAPIHH 340
Cdd:COG0472   196 LWFNFPPAKIFMGDTGSLFLGFALAALAILGRQEgaslLLLLLILGVPVVDTLSVILQRVLR----GKRIFKadRAHLHH 271
                         330
                  ....*....|....*..
gi 1308784032 341 HFEKKGWAEPKVIVRFW 357
Cdd:COG0472   272 HLELLGWSERQVVLRFW 288
GT_MraY-like cd06499
Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine: ...
73-280 2.45e-25

Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases. They catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate, which is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. One member, D-N-acetylhexosamine 1-phosphate transferase (GPT) is a eukaryotic enzyme, which is specific for UDP-GlcNAc as donor substrate and dolichol-phosphate as the membrane bound acceptor. The bacterial members MraY, WecA, and WbpL/WbcO utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic endproducts implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The eukaryotic reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for N-glycosylation. The prokaryotic reactions lead to the formation of polyprenol-linked oligosaccharides involved in bacterial cell wall and peptidoglycan assembly. Archaeal and eukaryotic enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme. Archaea possess the same N-glycosylation pathway as eukaryotes. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaea gene.


Pssm-ID: 133460  Cd Length: 185  Bit Score: 101.22  E-value: 2.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  73 GTPTMGGTLILFALVLPTILWADLSNVYVWMVLTITALYGVLGFLDDYLKVakrnSKGLAGRYKLFFQFLVAGGMLWYVF 152
Cdd:cd06499     1 PTPTMGGLAILLGFLLGVLLYIPHSNTLILLALLSGLVAGIVGFIDDLLGL----KVELSEREKLLLQILAALFLLLIGG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 153 GTEATGLSLEVRTKLALpfisvdaypvlplvLFILLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFvfMILAYAHGAVF 232
Cdd:cd06499    77 GHTTVTTPLGFVLDLGI--------------FYIPFAIIAIVGATNAVNLIDGMDGLAAGISVIASI--ACALFALLSGQ 140
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1308784032 233 WGkpvaeylkiihlpgveeLIIYCGAMIGAGIGFLWYNTYPASVFMGD 280
Cdd:cd06499   141 TT-----------------SALLFIILAGACLGFLYFNFYPAKIFMGD 171
GT_WecA_like cd06853
This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. ...
74-280 1.92e-22

This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.


Pssm-ID: 133463  Cd Length: 249  Bit Score: 94.86  E-value: 1.92e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  74 TPTMGGTLILFALVLPTILWADLSNV---YVWMVLTITALYGVLGFLDDYlkvakrnsKGLAGRYKLFFQFLVAGGMLWY 150
Cdd:cd06853     8 IPRLGGLAIFLGFLLALLLALLFPFFllpELLGLLAGATIIVLLGLLDDL--------FDLSPKVKLLGQILAALIVVFG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 151 vfgteatGLSLEVRTKLALPFIsvdaypVLPLVLFILLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMILAYAHGA 230
Cdd:cd06853    80 -------GGVILSLLGPFGGGI------ILLGWLSIPLTVLWIVGIINAINLIDGLDGLAGGVALIASLALAILALLNGQ 146
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1308784032 231 VFwgkpvaeylkiihlpgveeLIIYCGAMIGAGIGFLWYNTYPASVFMGD 280
Cdd:cd06853   147 VL-------------------VALLALALAGALLGFLPYNFHPARIFMGD 177
Glycos_transf_4 pfam00953
Glycosyl transferase family 4;
102-280 8.91e-20

Glycosyl transferase family 4;


Pssm-ID: 460008  Cd Length: 158  Bit Score: 84.96  E-value: 8.91e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 102 WMVLTITALYGVLGFLDDYlkvakrnsKGLAGRYKLFFQFLVAGGMLWYVFGTEATglslevrtkLALPFISVDAYpvLP 181
Cdd:pfam00953   1 LGLLLGALLIGLIGLIDDL--------LGLSARIKLLLQALAALILLVLGGIGLTS---------LGLPFGGGSLE--LG 61
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 182 LVLFILLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMILAYahgavfwgkpvaeylkiihLPGVEELIIYCGAMIG 261
Cdd:pfam00953  62 PWLSILLTLFAIVGLTNAVNFIDGLDGLAGGVAIIAALALGIIAY-------------------LLGNLELALLSLALLG 122
                         170
                  ....*....|....*....
gi 1308784032 262 AGIGFLWYNTYPASVFMGD 280
Cdd:pfam00953 123 ALLGFLPFNFYPAKIFMGD 141
GT_GPT_archaea cd06856
UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT)-like proteins in archaea. Eukaryotic GPT ...
75-280 2.81e-14

UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT)-like proteins in archaea. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaea gene, indicating that eukaryotic and archaeal enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme, which uses a different substrate.


Pssm-ID: 133466  Cd Length: 280  Bit Score: 72.28  E-value: 2.81e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  75 PTMGGTLILFALVLP-TILWADLSNVYVWMVLTITALYGVLGFLDDYLkvakrnskGLAGRYKLFFQFLVAGGMLWYVFG 153
Cdd:cd06856    14 PEMGGIAVLLGFSLGlLFLSALTHSVEALALLITSLLAGLIGLLDDIL--------GLSQSEKVLLTALPAIPLLVLKAG 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 154 TEATGLSLEVRtklalpfisvdaypVLPLVLFILLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMILAYAHGAVfw 233
Cdd:cd06856    86 NPLTSLPIGGR--------------VLGILYYLLIVPLGITGASNAFNMLAGFNGLEAGMGIIILLALAIILLINGDY-- 149
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1308784032 234 gkpvaeylkiihlpgveELIIYCGAMIGAGIGFLWYNTYPASVFMGD 280
Cdd:cd06856   150 -----------------DALIIALILVAALLAFLLYNKYPAKVFPGD 179
GT_WbpL_WbcO_like cd06854
The members of this subfamily catalyze the formation of a phosphodiester bond between a ...
74-280 3.02e-11

The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.


Pssm-ID: 133464  Cd Length: 253  Bit Score: 63.03  E-value: 3.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  74 TPTMGGTLILFALVLPTILWADLSNV---YVWMVLTITALYGVLGFLDDYlkvakrnsKGLAGRYKLFFQFLVAGGMLWy 150
Cdd:cd06854    15 TPRGGGIAFVLAFLLALLLAAAAGPLndlSYLLLLIGLLLLAAVGFIDDL--------RSLSPKIRLLVQLLAAALALY- 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 151 vfgteatglslevrtklALPFISVDAYPVLPLVLFILLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMILAYAHGA 230
Cdd:cd06854    86 -----------------ALGPLTSLLLNFLPPWLIALLLLLAIVWIINLYNFMDGIDGLAGGEALVVFLALALLGYLAGE 148
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1308784032 231 VFWGKPVAeylkiihlpgveeliiycgAMIGAGIGFLWYNTYPASVFMGD 280
Cdd:cd06854   149 PALALLAL-------------------ALAGALLGFLPFNWPPAKIFMGD 179
GT_MraY_like cd06912
This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like ...
74-280 1.26e-10

This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases, which catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate. This is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. The three bacterial members MraY, WecA, and WbpL/WbcO, utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The prokaryotic enzyme-catalyzed reactions lead to the formation of polyprenol-linked oligosaccharides involved in bacterial cell wall and peptidoglycan assembly.


Pssm-ID: 133467  Cd Length: 193  Bit Score: 59.95  E-value: 1.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  74 TPTMGGTLILFALVLPTILWADLSNVYVWMVLTITALYGVLGFLDDylkVAKRNSKglagRYKLFFQFLVAGgMLWYVFG 153
Cdd:cd06912    11 TPRIGGVAIFLGLLAGLLLLSLLSGSLLLLLLLAALPAFLAGLLED---ITKRVSP----RIRLLATFLSAL-LAVWLLG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 154 TEATGLSL-EVRTKLALPFISvdaypvlplvlfILLSMVVIVGASNAVNLTDGLDGLAIGPVILNAFVFMILAyahgavf 232
Cdd:cd06912    83 ASITRLDLpGLDLLLSFPPFA------------IIFTIFAVAGVANAFNIIDGFNGLASGVAIISLLSLALVA------- 143
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1308784032 233 wgkpvaeylkiiHLPGVEELIIYCGAMIGAGIGFLWYNTYPASVFMGD 280
Cdd:cd06912   144 ------------FQVGDTDLAFLALLLAGALLGFLIFNFPFGKIFLGD 179
GT_GPT_like cd06851
This family includes eukaryotic UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and ...
75-280 1.52e-04

This family includes eukaryotic UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and archaeal GPT-like glycosyltransferases. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaeal gene, indicating eukaryotic and archaeal enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme, which uses a different substrate.


Pssm-ID: 133461  Cd Length: 223  Bit Score: 42.49  E-value: 1.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032  75 PTMGGTLILFALVLPTILWADLSNVYV-------WMVLTITALYGV-LGFLDDYLkvakrnskGLAGRYKLFFQFLVAGG 146
Cdd:cd06851    14 PEPGGISILIGFVASEITLIFFPFLSFphfpiseILAALITSVLGFsVGIIDDRL--------TMGGWFKPVALAFAAAP 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308784032 147 MLwyVFGTEATGLSLEVrtklalpFISVDAYPVLPLVLFILLsmvvIVGASNAVNLTDGLDGLAIGpviLNAFVFMILAY 226
Cdd:cd06851    86 IL--LLGAYDSNLDFPL-------FGGSVKIPSLYLVLVVFM----IVITGNAFNSIAGLNGVEAG---FTTIISFALAI 149
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1308784032 227 AhgavfwgkpvaeylkiIHLPGVEELIIYCGAMIGAGIGFLWYNTYPASVFMGD 280
Cdd:cd06851   150 S----------------LLVQQNYEIGIACLCLAFASLAFLYYNKYPSRIFPGD 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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