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Conserved domains on  [gi|1308682720|gb|PKM52724|]
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50S ribosomal protein L7ae-like protein [Firmicutes bacterium HGW-Firmicutes-7]

Protein Classification

ribosomal L7Ae/L30e/S12e/Gadd45 family protein( domain architecture ID 624)

ribosomal L7Ae/L30e/S12e/Gadd45 family protein may be characterized as a K-turn binding protein; K-turns are RNA motifs comprised of a bulge flanked by canonical and noncanonical helices.

Gene Ontology:  GO:0005840
SCOP:  4001513

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L7Ae super family cl00600
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 11-78 2.03e-18

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


The actual alignment was detected with superfamily member PRK13601:

Pssm-ID: 469835  Cd Length: 82  Bit Score: 71.94  E-value: 2.03e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1308682720 11 RVVGTKQTLRVLENGTAKVLYVAKNAQKQVTLRVIELAESKSIPIVYIETMEELAQACDVEVKTATAA 78
Cdd:PRK13601   9 RVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVMCGIDVGAAAAA 76
 
Name Accession Description Interval E-value
PRK13601 PRK13601
putative L7Ae-like ribosomal protein; Provisional
 11-78 2.03e-18

putative L7Ae-like ribosomal protein; Provisional


Pssm-ID: 184173  Cd Length: 82  Bit Score: 71.94  E-value: 2.03e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1308682720 11 RVVGTKQTLRVLENGTAKVLYVAKNAQKQVTLRVIELAESKSIPIVYIETMEELAQACDVEVKTATAA 78
Cdd:PRK13601   9 RVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVMCGIDVGAAAAA 76
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 9-80 9.76e-15

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 62.87  E-value: 9.76e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1308682720  9 GPRVVGTKQTLRVLENGTAKVLYVAKNAQKQVTLRVIELAESKSIPIVYIETMEELAQACDvEVKTATAALI 80
Cdd:COG1358   14 GKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIG-KVGRAVVAIT 84
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 12-81 2.95e-06

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 41.04  E-value: 2.95e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1308682720 12 VVGTKQTLRVLENGTAKVLYVAKNAQK-QVTLRVIELAESKSIPIVYIETMEELAQACDVEVKTATAALIT 81
Cdd:pfam01248 17 VLGLKEVTKALERGEAKLVIIAEDCDPeEKVKLIPALCKEKNVPYVKVPSKKELGEACGKKRPVSALAIKD 87
 
Name Accession Description Interval E-value
PRK13601 PRK13601
putative L7Ae-like ribosomal protein; Provisional
 11-78 2.03e-18

putative L7Ae-like ribosomal protein; Provisional


Pssm-ID: 184173  Cd Length: 82  Bit Score: 71.94  E-value: 2.03e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1308682720 11 RVVGTKQTLRVLENGTAKVLYVAKNAQKQVTLRVIELAESKSIPIVYIETMEELAQACDVEVKTATAA 78
Cdd:PRK13601   9 RVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVMCGIDVGAAAAA 76
PRK13602 PRK13602
50S ribosomal protein L7ae-like protein;
12-80 2.47e-17

50S ribosomal protein L7ae-like protein;


Pssm-ID: 184174 [Multi-domain]  Cd Length: 82  Bit Score: 69.04  E-value: 2.47e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1308682720 12 VVGTKQTLRVLENGTAKVLYVAKNAQKQVTLRVIELAESKSIPIVYIETMEELAQACDVEVKTATAALI 80
Cdd:PRK13602  13 VIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGAAAVAII 81
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 9-80 9.76e-15

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 62.87  E-value: 9.76e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1308682720  9 GPRVVGTKQTLRVLENGTAKVLYVAKNAQKQVTLRVIELAESKSIPIVYIETMEELAQACDvEVKTATAALI 80
Cdd:COG1358   14 GKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIG-KVGRAVVAIT 84
PRK06683 PRK06683
hypothetical protein; Provisional
 12-81 8.70e-08

hypothetical protein; Provisional


Pssm-ID: 136002  Cd Length: 82  Bit Score: 45.07  E-value: 8.70e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308682720 12 VVGTKQTLRVLENGTAKVLYVAKNAQKQVTLRVIELAESKSIPIVYIETMEELAQACDVEVKTATAALIT 81
Cdd:PRK06683  13 VVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASAIGIIS 82
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 12-81 2.95e-06

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 41.04  E-value: 2.95e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1308682720 12 VVGTKQTLRVLENGTAKVLYVAKNAQK-QVTLRVIELAESKSIPIVYIETMEELAQACDVEVKTATAALIT 81
Cdd:pfam01248 17 VLGLKEVTKALERGEAKLVIIAEDCDPeEKVKLIPALCKEKNVPYVKVPSKKELGEACGKKRPVSALAIKD 87
RPL30E COG1911
Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 12-68 2.82e-05

Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441515 [Multi-domain]  Cd Length: 97  Bit Score: 38.65  E-value: 2.82e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1308682720 12 VVGTKQTLRVLENGTAKVLYVAKNAQKQVTLRVIELAESKSIPI-VYIETMEELAQAC 68
Cdd:COG1911   18 VLGSKQTIKAIKLGKAKLVILAANCPPEIREDIEYYAKLSNVPVyVYPGTSVELGALC 75
PRK13600 PRK13600
putative ribosomal protein L7Ae-like; Provisional
 12-80 1.19e-04

putative ribosomal protein L7Ae-like; Provisional


Pssm-ID: 184172  Cd Length: 84  Bit Score: 36.75  E-value: 1.19e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1308682720 12 VVGTKQTLRVLENGTAKVLYVAKNAQKQVTLRVIELAESKSIPIVYIETMEELAQACDVEVKTATAALI 80
Cdd:PRK13600  15 VVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIVALI 83
PRK01018 PRK01018
50S ribosomal protein L30e; Reviewed
 12-68 7.11e-04

50S ribosomal protein L30e; Reviewed


Pssm-ID: 179205 [Multi-domain]  Cd Length: 99  Bit Score: 34.94  E-value: 7.11e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1308682720 12 VVGTKQTLRVLENGTAKVLYVAKNAQKQVTLRVIELAESKSIPI-VYIETMEELAQAC 68
Cdd:PRK01018  18 ILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVyEYEGSSVELGTLC 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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