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Conserved domains on  [gi|1308656415|gb|PKM32026|]
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DUF2256 domain-containing protein [Gammaproteobacteria bacterium HGW-Gammaproteobacteria-11]

Protein Classification

DUF2256 domain-containing protein( domain architecture ID 10008508)

DUF2256 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4338 COG4338
Uncharacterized conserved protein, DUF2256 family [Function unknown];
2-42 1.31e-20

Uncharacterized conserved protein, DUF2256 family [Function unknown];


:

Pssm-ID: 443479  Cd Length: 52  Bit Score: 74.65  E-value: 1.31e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1308656415  2 KKADLPSKVCVVCGLPFNWRKKWARCWDEVKYCSERCRRQR 42
Cdd:COG4338    5 KKSDLPSKICAVCGRPFTWRKKWARDWDEVKYCSERCRRNK 45
 
Name Accession Description Interval E-value
COG4338 COG4338
Uncharacterized conserved protein, DUF2256 family [Function unknown];
2-42 1.31e-20

Uncharacterized conserved protein, DUF2256 family [Function unknown];


Pssm-ID: 443479  Cd Length: 52  Bit Score: 74.65  E-value: 1.31e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1308656415  2 KKADLPSKVCVVCGLPFNWRKKWARCWDEVKYCSERCRRQR 42
Cdd:COG4338    5 KKSDLPSKICAVCGRPFTWRKKWARDWDEVKYCSERCRRNK 45
DUF2256 pfam10013
Uncharacterized protein conserved in bacteria (DUF2256); Members of this family of ...
 2-41 1.90e-18

Uncharacterized protein conserved in bacteria (DUF2256); Members of this family of hypothetical bacterial proteins have no known function.


Pssm-ID: 462942  Cd Length: 40  Bit Score: 69.17  E-value: 1.90e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 1308656415  2 KKADLPSKVCVVCGLPFNWRKKWARCWDEVKYCSERCRRQ 41
Cdd:pfam10013  1 KKSDLPSKICAVCGRPFTWRKKWARCWDEVKYCSDRCRRA 40
 
Name Accession Description Interval E-value
COG4338 COG4338
Uncharacterized conserved protein, DUF2256 family [Function unknown];
2-42 1.31e-20

Uncharacterized conserved protein, DUF2256 family [Function unknown];


Pssm-ID: 443479  Cd Length: 52  Bit Score: 74.65  E-value: 1.31e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1308656415  2 KKADLPSKVCVVCGLPFNWRKKWARCWDEVKYCSERCRRQR 42
Cdd:COG4338    5 KKSDLPSKICAVCGRPFTWRKKWARDWDEVKYCSERCRRNK 45
DUF2256 pfam10013
Uncharacterized protein conserved in bacteria (DUF2256); Members of this family of ...
 2-41 1.90e-18

Uncharacterized protein conserved in bacteria (DUF2256); Members of this family of hypothetical bacterial proteins have no known function.


Pssm-ID: 462942  Cd Length: 40  Bit Score: 69.17  E-value: 1.90e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 1308656415  2 KKADLPSKVCVVCGLPFNWRKKWARCWDEVKYCSERCRRQ 41
Cdd:pfam10013  1 KKSDLPSKICAVCGRPFTWRKKWARCWDEVKYCSDRCRRA 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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