|
Name |
Accession |
Description |
Interval |
E-value |
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
6-420 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 724.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 6 RIVLP--DIPDLHKIEVYKAHNGYQAAAKSL-KMTPDEVINEVKASKLRGRGGACFPTGLKWSFMPKSTDKPKYLAVNGD 82
Cdd:COG1894 5 RVLLRncGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPGDPKYLVCNAD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 83 ESEPGSFKDRQIFEHNPHQLIEGILIAGYSMNLKAAYVYIRGEYHKWVKLFQDAVDEAYANGYVGekmKSTFGTNFSMDI 162
Cdd:COG1894 85 EGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLG---KNILGSGFDFDI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 163 YVHKGAGAYICGEETSLMNSLEGDRGYPRFKPPFPAQVGLWQMPTTVNNVETIATIPPIMNMGGVEYAKIGAPGHPGTIL 242
Cdd:COG1894 162 EVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 243 FGVSGHVNKPGVYELPTGIPLKTLIYDICGGVPGNKKIKAVIPGGSSMPPLRGDEIeDVLMDEESLKKYGTHIGTAGVMV 322
Cdd:COG1894 242 FSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGGRKLKAVQPGGPSGGCLPAEHL-DTPMDYESLAAAGSMLGSGGMIV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 323 MDEDTDIVAVTLRIAHFYHHESCGQCTPCREGTGWMDKILKRLVAGEGSQKDVDLLLSICDNIEGNTICALGDAAAWPVR 402
Cdd:COG1894 321 MDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPNPVL 400
|
410
....*....|....*...
gi 1308587779 403 GFIQKFREEFEAKVKDTR 420
Cdd:COG1894 401 STLKYFRDEFEAHIKDKR 418
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
11-416 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 629.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 11 DIPDLHKIEVYKAHNGYQAAAKSL-KMTPDEVINEVKASKLRGRGGACFPTGLKWSFMPK-STDKPKYLAVNGDESEPGS 88
Cdd:TIGR01959 7 DNPESWTLEEYEKRGGYDALRKALeEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKdDSPKPKYLVCNADESEPGT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 89 FKDRQIFEHNPHQLIEGILIAGYSMNLKAAYVYIRGEYHKWVKLFQDAVDEAYANGYVGekmKSTFGTNFSMDIYVHKGA 168
Cdd:TIGR01959 87 CKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLG---KNILGSGFDFELFVHRGA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 169 GAYICGEETSLMNSLEGDRGYPRFKPPFPAQVGLWQMPTTVNNVETIATIPPIMNMGGVEYAKIGAPGHPGTILFGVSGH 248
Cdd:TIGR01959 164 GAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSVSGH 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 249 VNKPGVYELPTGIPLKTLIYDICGGVPGNKKIKAVIPGGSSMPPLRGDEIEDVLMDEESLKKYGTHIGTAGVMVMDEDTD 328
Cdd:TIGR01959 244 VNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMDESTC 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 329 IVAVTLRIAHFYHHESCGQCTPCREGTGWMDKILKRLVAGEGSQKDVDLLLSICDNIEGNTICALGDAAAWPVRGFIQKF 408
Cdd:TIGR01959 324 MVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSAIKHF 403
|
....*...
gi 1308587779 409 REEFEAKV 416
Cdd:TIGR01959 404 RDEFEAHI 411
|
|
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
34-420 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 571.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 34 LKMTPDEVINEVKASKLRGRGGACFPTGLKWSFMPK-STDKPKYLAVNGDESEPGSFKDRQIFEHNPHQLIEGILIAGYS 112
Cdd:PRK13596 36 LDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKeSDGRPHYLVVNADESEPGTCKDRDILRHDPHKLIEGCLIASFA 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 113 MNLKAAYVYIRGEYHKWVKLFQDAVDEAYANGYVGekmKSTFGTNFSMDIYVHKGAGAYICGEETSLMNSLEGDRGYPRF 192
Cdd:PRK13596 116 MGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIG---KNACGSGWDFDIYVHHGAGAYICGEETALLESLEGKKGQPRL 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 193 KPPFPAQVGLWQMPTTVNNVETIATIPPIMNMGGVEYAKIGAPGHPGTILFGVSGHVNKPGVYELPTGIPLKTLIYDICG 272
Cdd:PRK13596 193 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTKLFCISGHVNKPCNVEEAMGIPFRELIEKHAG 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 273 GVPGN-KKIKAVIPGGSSMPPLRGDEIEDVLMDEESLKKYGTHIGTAGVMVMDEDTDIVAVTLRIAHFYHHESCGQCTPC 351
Cdd:PRK13596 273 GVRGGwDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPC 352
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1308587779 352 REGTGWMDKILKRLVAGEGSQKDVDLLLSICDNIEGNTICALGDAAAWPVRGFIQKFREEFEAKVKDTR 420
Cdd:PRK13596 353 REGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEERIDQYT 421
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
45-219 |
1.40e-60 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 193.88 E-value: 1.40e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 45 VKASKLRGRGGACFPTGLKWSFMPKstDKPKYLAVNGDESEPGSFKDRQIFEHNPHQLIEGILIAGYSMNLKAAYVYIRG 124
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPK--KKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 125 EYHKWVKLFQDAVDEAYANGYvgekmkstfgtnfsmDIYVHKGAGAYICGEETSLMNSLEGdRGYPRFKPpfPAQVGLwq 204
Cdd:pfam01512 79 EKPEAIAALEKAIAEARAAGF---------------DIEVHRGAGAYPCGEEKALIYSLTG-RGVPRGKP--PADVGV-- 138
|
170
....*....|....*
gi 1308587779 205 mptTVNNVETIATIP 219
Cdd:pfam01512 139 ---VVNNVETLAAVP 150
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
330-375 |
2.95e-22 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 89.12 E-value: 2.95e-22
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1308587779 330 VAVTLRIAHFYHHESCGQCTPCREGTGWMDKILKRLVAGEGSQKDV 375
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
6-420 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 724.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 6 RIVLP--DIPDLHKIEVYKAHNGYQAAAKSL-KMTPDEVINEVKASKLRGRGGACFPTGLKWSFMPKSTDKPKYLAVNGD 82
Cdd:COG1894 5 RVLLRncGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPGDPKYLVCNAD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 83 ESEPGSFKDRQIFEHNPHQLIEGILIAGYSMNLKAAYVYIRGEYHKWVKLFQDAVDEAYANGYVGekmKSTFGTNFSMDI 162
Cdd:COG1894 85 EGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLG---KNILGSGFDFDI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 163 YVHKGAGAYICGEETSLMNSLEGDRGYPRFKPPFPAQVGLWQMPTTVNNVETIATIPPIMNMGGVEYAKIGAPGHPGTIL 242
Cdd:COG1894 162 EVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 243 FGVSGHVNKPGVYELPTGIPLKTLIYDICGGVPGNKKIKAVIPGGSSMPPLRGDEIeDVLMDEESLKKYGTHIGTAGVMV 322
Cdd:COG1894 242 FSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGGRKLKAVQPGGPSGGCLPAEHL-DTPMDYESLAAAGSMLGSGGMIV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 323 MDEDTDIVAVTLRIAHFYHHESCGQCTPCREGTGWMDKILKRLVAGEGSQKDVDLLLSICDNIEGNTICALGDAAAWPVR 402
Cdd:COG1894 321 MDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPNPVL 400
|
410
....*....|....*...
gi 1308587779 403 GFIQKFREEFEAKVKDTR 420
Cdd:COG1894 401 STLKYFRDEFEAHIKDKR 418
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
11-416 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 629.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 11 DIPDLHKIEVYKAHNGYQAAAKSL-KMTPDEVINEVKASKLRGRGGACFPTGLKWSFMPK-STDKPKYLAVNGDESEPGS 88
Cdd:TIGR01959 7 DNPESWTLEEYEKRGGYDALRKALeEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKdDSPKPKYLVCNADESEPGT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 89 FKDRQIFEHNPHQLIEGILIAGYSMNLKAAYVYIRGEYHKWVKLFQDAVDEAYANGYVGekmKSTFGTNFSMDIYVHKGA 168
Cdd:TIGR01959 87 CKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLG---KNILGSGFDFELFVHRGA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 169 GAYICGEETSLMNSLEGDRGYPRFKPPFPAQVGLWQMPTTVNNVETIATIPPIMNMGGVEYAKIGAPGHPGTILFGVSGH 248
Cdd:TIGR01959 164 GAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSVSGH 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 249 VNKPGVYELPTGIPLKTLIYDICGGVPGNKKIKAVIPGGSSMPPLRGDEIEDVLMDEESLKKYGTHIGTAGVMVMDEDTD 328
Cdd:TIGR01959 244 VNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMDESTC 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 329 IVAVTLRIAHFYHHESCGQCTPCREGTGWMDKILKRLVAGEGSQKDVDLLLSICDNIEGNTICALGDAAAWPVRGFIQKF 408
Cdd:TIGR01959 324 MVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSAIKHF 403
|
....*...
gi 1308587779 409 REEFEAKV 416
Cdd:TIGR01959 404 RDEFEAHI 411
|
|
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
34-420 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 571.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 34 LKMTPDEVINEVKASKLRGRGGACFPTGLKWSFMPK-STDKPKYLAVNGDESEPGSFKDRQIFEHNPHQLIEGILIAGYS 112
Cdd:PRK13596 36 LDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKeSDGRPHYLVVNADESEPGTCKDRDILRHDPHKLIEGCLIASFA 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 113 MNLKAAYVYIRGEYHKWVKLFQDAVDEAYANGYVGekmKSTFGTNFSMDIYVHKGAGAYICGEETSLMNSLEGDRGYPRF 192
Cdd:PRK13596 116 MGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIG---KNACGSGWDFDIYVHHGAGAYICGEETALLESLEGKKGQPRL 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 193 KPPFPAQVGLWQMPTTVNNVETIATIPPIMNMGGVEYAKIGAPGHPGTILFGVSGHVNKPGVYELPTGIPLKTLIYDICG 272
Cdd:PRK13596 193 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTKLFCISGHVNKPCNVEEAMGIPFRELIEKHAG 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 273 GVPGN-KKIKAVIPGGSSMPPLRGDEIEDVLMDEESLKKYGTHIGTAGVMVMDEDTDIVAVTLRIAHFYHHESCGQCTPC 351
Cdd:PRK13596 273 GVRGGwDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPC 352
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1308587779 352 REGTGWMDKILKRLVAGEGSQKDVDLLLSICDNIEGNTICALGDAAAWPVRGFIQKFREEFEAKVKDTR 420
Cdd:PRK13596 353 REGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEERIDQYT 421
|
|
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
34-434 |
2.73e-179 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 508.56 E-value: 2.73e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 34 LKMTPDEVINEVKASKLRGRGGACFPTGLKWSFMPKST--DKPKYLAVNGDESEPGSFKDRQIFEHNPHQLIEGILIAGY 111
Cdd:PTZ00304 56 LLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKVKpdGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGALLAGF 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 112 SMNLKAAYVYIRGEYHKWVKLFQDAVDEAYANGYVGekmKSTFGTNFSMDIYVHKGAGAYICGEETSLMNSLEGDRGYPR 191
Cdd:PTZ00304 136 AMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLG---KNACGSGYDFDVYVHRGAGAYICGEETALIESIEGKPGKPR 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 192 FKPPFPAQVGLWQMPTTVNNVETIATIPPIMNMGGVEYAKIGAPGHPGTILFGVSGHVNKPGVYELPTGIPLKTLIYDIC 271
Cdd:PTZ00304 213 LKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPNNAGTKLFCISGHVNNPCTVEEEMSIPLRELIERHC 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 272 GGVPGN-KKIKAVIPGGSSMPPLRGDEIEDVLMDEESLKKYGTHIGTAGVMVMDEDTDIVAVTLRIAHFYHHESCGQCTP 350
Cdd:PTZ00304 293 GGVRGGwDNLLCVIPGGSSVPLIPKEICDNVLMDFDALKEVQSGLGTAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTP 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 351 CREGTGWMDKILKRLVAGEGSQKDVDLLLSICDNIEGNTICALGDAAAWPVRGFIQKFREEFEAKVKDtrvFVAPNVVHG 430
Cdd:PTZ00304 373 CREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQIEGHTICALGDAAAWPVQGLIRHFRPEIEERIER---YWEANPHWG 449
|
....
gi 1308587779 431 KRLS 434
Cdd:PTZ00304 450 KSGS 453
|
|
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
36-418 |
1.06e-168 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 481.68 E-value: 1.06e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 36 MTPDEVINEVKASKLRGRGGACFPTGLKWSFMPKSTD-KPKYLAVNGDESEPGSFKDRQIFEHNPHQLIEGILIAGYSMN 114
Cdd:PLN03132 69 KGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDgRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMR 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 115 LKAAYVYIRGEYHKWVKLFQDAVDEAYANGYVGekmKSTFGTNFSMDIYVHKGAGAYICGEETSLMNSLEGDRGYPRFKP 194
Cdd:PLN03132 149 ARAAYIYIRGEYVNERLNLERARHEAYAAGLLG---KNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKP 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 195 PFPAQVGLWQMPTTVNNVETIATIPPIMNMGGVEYAKIGAPGHPGTILFGVSGHVNKPGVYELPTGIPLKTLIYDICGGV 274
Cdd:PLN03132 226 PFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGV 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 275 PGN-KKIKAVIPGGSSMPPLRGDEIEDVLMDEESLKKYGTHIGTAGVMVMDEDTDIVAVTLRIAHFYHHESCGQCTPCRE 353
Cdd:PLN03132 306 RGGwDNLLAIIPGGSSVPLLPKKICDDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCRE 385
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1308587779 354 GTGWMDKILKRLVAGEGSQKDVDLLLSICDNIEGNTICALGDAAAWPVRGFIQKFREEFEAKVKD 418
Cdd:PLN03132 386 GTGWLWDIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 450
|
|
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
18-417 |
1.35e-130 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 384.16 E-value: 1.35e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 18 IEVYKAHNGYQAAAKSLK-MTPDEVINEVKASKLRGRGGACFPTGLKWSFMPKSTD-KPKYLAVNGDESEPGSFKDRQIF 95
Cdd:PRK11278 27 LDEYRSKNGYEGARKALTgMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESmNIRYLLCNADEMEPGTYKDRLLM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 96 EHNPHQLIEGILIAGYSMNLKAAYVYIRGEYHKWVKLFQDAVDEAYANGYVGekmKSTFGTNFSMDIYVHKGAGAYICGE 175
Cdd:PRK11278 107 EQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLG---KNIMGTGFDFELFVHTGAGRYICGE 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 176 ETSLMNSLEGDRGYPRFKPPFPAQVGLWQMPTTVNNVETIATIPPIMNMGGVEYAKIGAPGHP--GTILFGVSGHVNKPG 253
Cdd:PRK11278 184 ETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKGKSKdaGTKLMGFSGRVKNPG 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 254 VYELPTGIPLKTLIYDICGGVPGNKKIKAVIPGGSSMPPLRGDEIeDVLMDEESLKKYGTHIGTAGVMVMDEDTDIVAVT 333
Cdd:PRK11278 264 LWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLV 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 334 LRIAHFYHHESCGQCTPCREGTGWMDKILKRLVAGEGSQKDVDLLLSICDNI-EGNTICALGDAAAWPVRGFIQKFREEF 412
Cdd:PRK11278 343 RNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFREEF 422
|
....*
gi 1308587779 413 EAKVK 417
Cdd:PRK11278 423 EAGIK 427
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
45-219 |
1.40e-60 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 193.88 E-value: 1.40e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 45 VKASKLRGRGGACFPTGLKWSFMPKstDKPKYLAVNGDESEPGSFKDRQIFEHNPHQLIEGILIAGYSMNLKAAYVYIRG 124
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPK--KKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 125 EYHKWVKLFQDAVDEAYANGYvgekmkstfgtnfsmDIYVHKGAGAYICGEETSLMNSLEGdRGYPRFKPpfPAQVGLwq 204
Cdd:pfam01512 79 EKPEAIAALEKAIAEARAAGF---------------DIEVHRGAGAYPCGEEKALIYSLTG-RGVPRGKP--PADVGV-- 138
|
170
....*....|....*
gi 1308587779 205 mptTVNNVETIATIP 219
Cdd:pfam01512 139 ---VVNNVETLAAVP 150
|
|
| NADH_4Fe-4S |
pfam10589 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
331-414 |
2.86e-47 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 463160 [Multi-domain] Cd Length: 85 Bit Score: 157.25 E-value: 2.86e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 331 AVTLRIAHFYHHESCGQCTPCREGTGWMDKILKRLVAGEGSQKDVDLLLSICDNIEGNTICALGDAAAWPVRGFIQKFRE 410
Cdd:pfam10589 1 DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSLCGLGDGAANPVLSALRYFRD 80
|
....
gi 1308587779 411 EFEA 414
Cdd:pfam10589 81 EFEA 84
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
330-375 |
2.95e-22 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 89.12 E-value: 2.95e-22
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1308587779 330 VAVTLRIAHFYHHESCGQCTPCREGTGWMDKILKRLVAGEGSQKDV 375
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| rnfC |
TIGR01945 |
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ... |
35-290 |
2.03e-11 |
|
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]
Pssm-ID: 273888 [Multi-domain] Cd Length: 435 Bit Score: 65.44 E-value: 2.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 35 KMTPDEVINEVKASKLRGRGGACFPTGLKWSFMPKStdKPKYLAVNGDESEPGSFKDRQIFEHNPHQLIEGILIAGYSMN 114
Cdd:TIGR01945 118 NLSPEEILEKIRAAGIVGLGGATFPTHVKLNPPPEK--KIETLIINGAECEPYLTCDDRLMRERAEEIIGGIRILLKILG 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 115 LKAAYVYIrgeyhkwvklfQDAVDEAYANgyvgekMKSTF-GTNFSmdiyVHKGAGAYICGEETSLMNSLEGdRGYPRFK 193
Cdd:TIGR01945 196 VKKVVIGI-----------EDNKPEAIAA------LKKALgGYNIK----VRVLPTKYPQGGEKQLIYALTG-REVPSGG 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 194 ppFPAQVGLwqmptTVNNVETIATIppimnmggveYAKI--GAPGHPGTILfgVSGH-VNKPGVYELPTGIPLKTLIyDI 270
Cdd:TIGR01945 254 --LPADIGV-----VVQNVGTAFAI----------YEAVvnGKPLIERVVT--VTGDaIRRPKNLWVLIGTPVSDIL-AF 313
|
250 260
....*....|....*....|
gi 1308587779 271 CGGVPGNKkiKAVIPGGSSM 290
Cdd:TIGR01945 314 CGGFREKP--ERLIMGGPMM 331
|
|
| RnfC |
COG4656 |
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ... |
35-290 |
2.24e-11 |
|
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443694 [Multi-domain] Cd Length: 451 Bit Score: 65.54 E-value: 2.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 35 KMTPDEVINEVKASKLRGRGGACFPTGLKWSfmPKSTDKPKYLAVNGDESEPG-SFKDRQIFEHnPHQLIEGILIAGYSM 113
Cdd:COG4656 118 DLSPEEIIERIREAGIVGLGGAGFPTHVKLS--PPPDKKIDTLIINGAECEPYlTCDDRLMRER-AEEIIEGIRILMKAL 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 114 NLKAAYVYIRGEYHKWVKLFQDAVDEAYangyvgekmkstfgtnfsmDIYVHKGAGAYICGEETSLMNSLEGdRGYPRFK 193
Cdd:COG4656 195 GAKKVIIGIEDNKPEAIAALRKALAGDD-------------------DIEVVVLPTKYPQGGEKQLIKALTG-REVPSGG 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308587779 194 ppFPAQVGLwqmptTVNNVETIATIppimnmggveY-AkigapghpgtILFG---------VSGH-VNKPGVYELPTGIP 262
Cdd:COG4656 255 --LPADVGV-----VVQNVGTAYAI----------YrA----------VRDGkpliervvtVTGDaVKEPGNLLVRIGTP 307
|
250 260
....*....|....*....|....*...
gi 1308587779 263 LKTLIyDICGGVPGnkKIKAVIPGGSSM 290
Cdd:COG4656 308 VSDLL-EQAGGFKE--EPGKLIMGGPMM 332
|
|
| SLBB |
pfam10531 |
SLBB domain; |
243-291 |
2.03e-06 |
|
SLBB domain;
Pssm-ID: 463136 [Multi-domain] Cd Length: 56 Bit Score: 44.58 E-value: 2.03e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1308587779 243 FGVSGHVNKPGVYELPTGIPLKTLIYdICGGVPGNKKIKAVI-----PGGSSMP 291
Cdd:pfam10531 2 VTVTGEVKRPGNYEVPIGTTLSDLIE-LAGGFTDDADLDINLrrlkrPGGPMMG 54
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
36-108 |
1.28e-03 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 41.09 E-value: 1.28e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1308587779 36 MTPDEVINEVKASKLRGRGGACFPTGLKWSfmPKStDKPKYLAVNGDESEPG-SFKDRQIFEHnPHQLIEGILI 108
Cdd:PRK05035 125 LSPEELIERIRQAGIAGLGGAGFPTAVKLQ--PGG-DKIETLIINGAECEPYiTADDRLMRER-ADEIIEGIRI 194
|
|
| |
