|
Name |
Accession |
Description |
Interval |
E-value |
| ComP |
COG4585 |
Signal transduction histidine kinase ComP [Signal transduction mechanisms]; |
204-419 |
3.53e-35 |
|
Signal transduction histidine kinase ComP [Signal transduction mechanisms];
Pssm-ID: 443642 [Multi-domain] Cd Length: 252 Bit Score: 130.51 E-value: 3.53e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 204 MLSGFIMIACIVLAVMPWA----NAMLQRLSREQALKEREEERADMTAHLHDGVLQTLALIQLHSE--------DPS--- 268
Cdd:COG4585 12 LLVGALLGLLLALVLLRARraerAAELERELAARAEEAREEERRRIARELHDGVGQSLSAIKLQLEaarrlldaDPEaar 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 269 ----TVFTLARGQERELREWLYQERST--SDRSVSAGLKQIAAEVEDEHGKPIEVVTVGDAH--PSAQTDALLDATRQAL 340
Cdd:COG4585 92 eeleEIRELAREALAELRRLVRGLRPPalDDLGLAAALEELAERLLRAAGIRVELDVDGDPDrlPPEVELALYRIVQEAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 341 VNAVTH-GSEPISLYCEATDTTVEVFVRDHGEGFDIDTIPPDRLGIReSIIGRIKRRGGTVEIVSRAGWGTEVRMHMPIA 419
Cdd:COG4585 172 TNALKHaGATRVTVTLEVDDGELTLTVRDDGVGFDPEAAPGGGLGLR-GMRERAEALGGTLTIGSAPGGGTRVRATLPLA 250
|
|
| PspC |
COG1983 |
Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal ... |
12-74 |
3.77e-22 |
|
Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal transduction mechanisms];
Pssm-ID: 441586 [Multi-domain] Cd Length: 65 Bit Score: 89.06 E-value: 3.77e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1307888527 12 RMPLMRPKRGRWLTGVCKGIALHLGISVMWVRLAFIALTCLYGAGIIAYVFLWIFMPAGDPQA 74
Cdd:COG1983 1 RKKLYRSRDDRVIAGVCAGLAEYFGIDPTLVRLIFVLLTLFGGAGILLYLILWLLLPEAPTAA 63
|
|
| PspC |
pfam04024 |
PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a ... |
14-68 |
3.82e-21 |
|
PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Pssm-ID: 461134 Cd Length: 57 Bit Score: 86.33 E-value: 3.82e-21
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1307888527 14 PLMRPKRGRWLTGVCKGIALHLGISVMWVRLAFIALTCLYGAGIIAYVFLWIFMP 68
Cdd:pfam04024 2 KLYRSRDDRMIAGVCGGLAEYFGIDPTLVRLLFVLLALFGGGGILLYIILWLLIP 56
|
|
| phageshock_pspC |
TIGR02978 |
phage shock protein C; All members of this protein family are the phage shock protein PspC. ... |
15-97 |
3.67e-10 |
|
phage shock protein C; All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions]
Pssm-ID: 132023 Cd Length: 121 Bit Score: 57.26 E-value: 3.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 15 LMRPKRGRWLTGVCKGIALHLGISVMWVRLAFIALTCLYGAG--IIAYVFLWIFMpagDPQAVASAEHIPVEQAPLARGN 92
Cdd:TIGR02978 4 LYRDPQNGKIAGVCAGLADYFGVEVWLVRILVVSALLFGGGFfvLVAYIALWLLL---DKKPINLYEDDDVKSKPWQAGQ 80
|
....*
gi 1307888527 93 QAAQA 97
Cdd:TIGR02978 81 SPRQA 85
|
|
| HATPase_UhpB-NarQ-NarX-like |
cd16917 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
337-417 |
9.31e-09 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli UhpB, NarQ and NarX, and Bacillus subtilis YdfH, YhcY and YfiJ; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli UhpB, a HK of the UhpB-UhpA TCS, NarQ and NarX, HKs of the NarQ-NarP and NarX-NarL TCSs, respectively, and Bacillus YdfH, YhcY and YfiJ HKs, of the YdfH-YdfI, YhcY-YhcZ and YfiJ-YfiK TCSs, respectively. In addition, it includes Bacillus YxjM, ComP, LiaS and DesK, HKs of the YxjM-YxjML, ComP-ComA, LiaS-LiaR, DesR-DesK TCSs, respectively. Proteins having this HATPase domain have a histidine kinase dimerization and phosphoacceptor domain; some have accessory domains such as GAF, HAMP, PAS and MASE sensor domains.
Pssm-ID: 340394 [Multi-domain] Cd Length: 87 Bit Score: 52.17 E-value: 9.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 337 RQALVNAVTH-GSEPISLYCEATDTTVEVFVRDHGEGFDIDTIPPDR----LGIREsiigRIKRRGGTVEIVSRAGWGTE 411
Cdd:cd16917 6 QEALTNALKHaGASRVRVTLSYTADELTLTVVDDGVGFDGPAPPGGGgfglLGMRE----RAELLGGTLTIGSRPGGGTR 81
|
....*.
gi 1307888527 412 VRMHMP 417
Cdd:cd16917 82 VTARLP 87
|
|
| HATPase_c_2 |
pfam13581 |
Histidine kinase-like ATPase domain; |
325-414 |
9.16e-07 |
|
Histidine kinase-like ATPase domain;
Pssm-ID: 433327 [Multi-domain] Cd Length: 127 Bit Score: 47.67 E-value: 9.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 325 PSAQTDALLDATRQALVNAVTHG-----SEPISLYCEATDTTVEVFVRDHGEGFDIDTIPPDRLgirESIIGRIKRRG-G 398
Cdd:pfam13581 25 PEELLDEVELAVGEACTNAVEHAyregpEGPVEVRLTSDGGGLVVTVADSGPPFDPLTLPPPDL---EEPDEDRKEGGrG 101
|
90 100
....*....|....*....|....*
gi 1307888527 399 ---------TVEIVSRAGwGTEVRM 414
Cdd:pfam13581 102 lalirglmdDVEYTRGGE-GNTVRM 125
|
|
| PRK10935 |
PRK10935 |
nitrate/nitrite two-component system sensor histidine kinase NarQ; |
225-417 |
2.04e-06 |
|
nitrate/nitrite two-component system sensor histidine kinase NarQ;
Pssm-ID: 236800 [Multi-domain] Cd Length: 565 Bit Score: 49.85 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 225 MLQR-LSREQALKERE-----EERADMTAHLHDGVLQTLAL--IQL----HSEDPSTVFTLARGQE---------RELRE 283
Cdd:PRK10935 341 MLGRgLYFNQAQKQQQqlllmEERATIARELHDSLAQVLSYlkIQLtllkRSLDEDNAKAQSIIAEfdqalsdayRQLRE 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 284 WLYQERST-SDRSVSAGLKQIAAEVEDEHGKPIEVvtvgDAHPSAQT-DA-----LLDATRQALVNAVTH--GSEPISLY 354
Cdd:PRK10935 421 LLTTFRLTiQEANLGSALEEMLDQLRNQTDAKITL----DCRLPSQAlDAqqqvhLLQIIREATLNAIKHanASEIAVSC 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1307888527 355 CEATDTTVEVFVRDHGEGFDIDTIPPDRLGI---REsiigRIKRRGGTVEIVSRAGWGTEVRMHMP 417
Cdd:PRK10935 497 VTNPDGEHTVSIRDDGIGIGELKEPEGHYGLnimQE----RAERLGGTLTISQPPGGGTTVSLTFP 558
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
339-419 |
3.06e-04 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 39.94 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 339 ALVNAVTHGSE--PISLYCEATDTTVEVFVRDHGEGFDIDTI-----PPDRLGIRESIIG-----------RIKRRGGTV 400
Cdd:smart00387 13 LLDNAIKYTPEggRITVTLERDGDHVEITVEDNGPGIPPEDLekifePFFRTDKRSRKIGgtglglsivkkLVELHGGEI 92
|
90
....*....|....*....
gi 1307888527 401 EIVSRAGWGTEVRMHMPIA 419
Cdd:smart00387 93 SVESEPGGGTTFTITLPLE 111
|
|
| PRK10697 |
PRK10697 |
envelope stress response membrane protein PspC; |
18-98 |
4.47e-03 |
|
envelope stress response membrane protein PspC;
Pssm-ID: 182656 Cd Length: 118 Bit Score: 36.85 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 18 PKRGRwLTGVCKGIALHLGISVMWVR-LAFIALTC-LYGAGIIAYVFLWIFM-PAgdPQAVASAEHIPVEQAPLARGNQA 94
Cdd:PRK10697 13 PQQGM-VKGVCAGIAHYFDVPVKLVRiIVVLSIFFgLFVFTLVAYIILSFALdPM--PDNMAFGEQQPSSSELLDEVDRE 89
|
....
gi 1307888527 95 AQAG 98
Cdd:PRK10697 90 LAAG 93
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ComP |
COG4585 |
Signal transduction histidine kinase ComP [Signal transduction mechanisms]; |
204-419 |
3.53e-35 |
|
Signal transduction histidine kinase ComP [Signal transduction mechanisms];
Pssm-ID: 443642 [Multi-domain] Cd Length: 252 Bit Score: 130.51 E-value: 3.53e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 204 MLSGFIMIACIVLAVMPWA----NAMLQRLSREQALKEREEERADMTAHLHDGVLQTLALIQLHSE--------DPS--- 268
Cdd:COG4585 12 LLVGALLGLLLALVLLRARraerAAELERELAARAEEAREEERRRIARELHDGVGQSLSAIKLQLEaarrlldaDPEaar 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 269 ----TVFTLARGQERELREWLYQERST--SDRSVSAGLKQIAAEVEDEHGKPIEVVTVGDAH--PSAQTDALLDATRQAL 340
Cdd:COG4585 92 eeleEIRELAREALAELRRLVRGLRPPalDDLGLAAALEELAERLLRAAGIRVELDVDGDPDrlPPEVELALYRIVQEAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 341 VNAVTH-GSEPISLYCEATDTTVEVFVRDHGEGFDIDTIPPDRLGIReSIIGRIKRRGGTVEIVSRAGWGTEVRMHMPIA 419
Cdd:COG4585 172 TNALKHaGATRVTVTLEVDDGELTLTVRDDGVGFDPEAAPGGGLGLR-GMRERAEALGGTLTIGSAPGGGTRVRATLPLA 250
|
|
| PspC |
COG1983 |
Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal ... |
12-74 |
3.77e-22 |
|
Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal transduction mechanisms];
Pssm-ID: 441586 [Multi-domain] Cd Length: 65 Bit Score: 89.06 E-value: 3.77e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1307888527 12 RMPLMRPKRGRWLTGVCKGIALHLGISVMWVRLAFIALTCLYGAGIIAYVFLWIFMPAGDPQA 74
Cdd:COG1983 1 RKKLYRSRDDRVIAGVCAGLAEYFGIDPTLVRLIFVLLTLFGGAGILLYLILWLLLPEAPTAA 63
|
|
| PspC |
pfam04024 |
PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a ... |
14-68 |
3.82e-21 |
|
PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Pssm-ID: 461134 Cd Length: 57 Bit Score: 86.33 E-value: 3.82e-21
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1307888527 14 PLMRPKRGRWLTGVCKGIALHLGISVMWVRLAFIALTCLYGAGIIAYVFLWIFMP 68
Cdd:pfam04024 2 KLYRSRDDRMIAGVCGGLAEYFGIDPTLVRLLFVLLALFGGGGILLYIILWLLIP 56
|
|
| phageshock_pspC |
TIGR02978 |
phage shock protein C; All members of this protein family are the phage shock protein PspC. ... |
15-97 |
3.67e-10 |
|
phage shock protein C; All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions]
Pssm-ID: 132023 Cd Length: 121 Bit Score: 57.26 E-value: 3.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 15 LMRPKRGRWLTGVCKGIALHLGISVMWVRLAFIALTCLYGAG--IIAYVFLWIFMpagDPQAVASAEHIPVEQAPLARGN 92
Cdd:TIGR02978 4 LYRDPQNGKIAGVCAGLADYFGVEVWLVRILVVSALLFGGGFfvLVAYIALWLLL---DKKPINLYEDDDVKSKPWQAGQ 80
|
....*
gi 1307888527 93 QAAQA 97
Cdd:TIGR02978 81 SPRQA 85
|
|
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
224-419 |
8.86e-09 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 55.68 E-value: 8.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 224 AMLQRLSREQALkeREEERADMTAHLHDGVLQTLALIQlhsedpsTVFTLARGQEREL---REWLyqerstsdrSVSAGL 300
Cdd:COG2205 36 GAAELLLDEEDL--SPEERRELLEIIRESAERLLRLIE-------DLLDLSRLESGKLsleLEPV---------DLAELL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 301 KQIAAEVE---DEHGKPIEVvTVGDAHPSAQTDALLdaTRQALV----NAVTHGSE--PISLYCEATDTTVEVFVRDHGE 371
Cdd:COG2205 98 EEAVEELRplaEEKGIRLEL-DLPPELPLVYADPEL--LEQVLAnlldNAIKYSPPggTITISARREGDGVRISVSDNGP 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1307888527 372 GfdidtIPPD----------RLGIRESIIGR----------IKRRGGTVEIVSRAGWGTEVRMHMPIA 419
Cdd:COG2205 175 G-----IPEEeleriferfyRGDNSRGEGGTglglaivkriVEAHGGTIWVESEPGGGTTFTVTLPLA 237
|
|
| HATPase_UhpB-NarQ-NarX-like |
cd16917 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
337-417 |
9.31e-09 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli UhpB, NarQ and NarX, and Bacillus subtilis YdfH, YhcY and YfiJ; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli UhpB, a HK of the UhpB-UhpA TCS, NarQ and NarX, HKs of the NarQ-NarP and NarX-NarL TCSs, respectively, and Bacillus YdfH, YhcY and YfiJ HKs, of the YdfH-YdfI, YhcY-YhcZ and YfiJ-YfiK TCSs, respectively. In addition, it includes Bacillus YxjM, ComP, LiaS and DesK, HKs of the YxjM-YxjML, ComP-ComA, LiaS-LiaR, DesR-DesK TCSs, respectively. Proteins having this HATPase domain have a histidine kinase dimerization and phosphoacceptor domain; some have accessory domains such as GAF, HAMP, PAS and MASE sensor domains.
Pssm-ID: 340394 [Multi-domain] Cd Length: 87 Bit Score: 52.17 E-value: 9.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 337 RQALVNAVTH-GSEPISLYCEATDTTVEVFVRDHGEGFDIDTIPPDR----LGIREsiigRIKRRGGTVEIVSRAGWGTE 411
Cdd:cd16917 6 QEALTNALKHaGASRVRVTLSYTADELTLTVVDDGVGFDGPAPPGGGgfglLGMRE----RAELLGGTLTIGSRPGGGTR 81
|
....*.
gi 1307888527 412 VRMHMP 417
Cdd:cd16917 82 VTARLP 87
|
|
| RsbW |
COG2172 |
Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]; |
325-418 |
1.67e-07 |
|
Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];
Pssm-ID: 441775 [Multi-domain] Cd Length: 127 Bit Score: 49.91 E-value: 1.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 325 PSAQTDALLdATRQALVNAVTHG-----SEPISLYCEATDTTVEVFVRDHGEGFDIDTIPPDRLGIRESiiGR----IKR 395
Cdd:COG2172 29 EDDADDLVL-AVSEAVTNAVRHAyggdpDGPVEVELELDPDGLEIEVRDEGPGFDPEDLPDPYSTLAEG--GRglflIRR 105
|
90 100
....*....|....*....|...
gi 1307888527 396 RGGTVEIVSRAGwGTEVRMHMPI 418
Cdd:COG2172 106 LMDEVEYESDPG-GTTVRLVKRL 127
|
|
| HATPase_c_2 |
pfam13581 |
Histidine kinase-like ATPase domain; |
325-414 |
9.16e-07 |
|
Histidine kinase-like ATPase domain;
Pssm-ID: 433327 [Multi-domain] Cd Length: 127 Bit Score: 47.67 E-value: 9.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 325 PSAQTDALLDATRQALVNAVTHG-----SEPISLYCEATDTTVEVFVRDHGEGFDIDTIPPDRLgirESIIGRIKRRG-G 398
Cdd:pfam13581 25 PEELLDEVELAVGEACTNAVEHAyregpEGPVEVRLTSDGGGLVVTVADSGPPFDPLTLPPPDL---EEPDEDRKEGGrG 101
|
90 100
....*....|....*....|....*
gi 1307888527 399 ---------TVEIVSRAGwGTEVRM 414
Cdd:pfam13581 102 lalirglmdDVEYTRGGE-GNTVRM 125
|
|
| PRK10935 |
PRK10935 |
nitrate/nitrite two-component system sensor histidine kinase NarQ; |
225-417 |
2.04e-06 |
|
nitrate/nitrite two-component system sensor histidine kinase NarQ;
Pssm-ID: 236800 [Multi-domain] Cd Length: 565 Bit Score: 49.85 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 225 MLQR-LSREQALKERE-----EERADMTAHLHDGVLQTLAL--IQL----HSEDPSTVFTLARGQE---------RELRE 283
Cdd:PRK10935 341 MLGRgLYFNQAQKQQQqlllmEERATIARELHDSLAQVLSYlkIQLtllkRSLDEDNAKAQSIIAEfdqalsdayRQLRE 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 284 WLYQERST-SDRSVSAGLKQIAAEVEDEHGKPIEVvtvgDAHPSAQT-DA-----LLDATRQALVNAVTH--GSEPISLY 354
Cdd:PRK10935 421 LLTTFRLTiQEANLGSALEEMLDQLRNQTDAKITL----DCRLPSQAlDAqqqvhLLQIIREATLNAIKHanASEIAVSC 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1307888527 355 CEATDTTVEVFVRDHGEGFDIDTIPPDRLGI---REsiigRIKRRGGTVEIVSRAGWGTEVRMHMP 417
Cdd:PRK10935 497 VTNPDGEHTVSIRDDGIGIGELKEPEGHYGLnimQE----RAERLGGTLTISQPPGGGTTVSLTFP 558
|
|
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
226-419 |
3.01e-06 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 48.75 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 226 LQRLSREQALKEREEERADMTAHL-HDgvLQT-LALIQLHSEdpstvfTLARGQERELREWLYQERSTSDR--------- 294
Cdd:COG0642 94 LLLLALLLLLEEANEAKSRFLANVsHE--LRTpLTAIRGYLE------LLLEELDEEQREYLETILRSADRllrlindll 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 295 ---SVSAG----------LKQIAAEVEDE-----HGKPIEV-VTVGDAHPSAQTDAllDATRQALV----NAVTHGSE-- 349
Cdd:COG0642 166 dlsRLEAGklelepepvdLAELLEEVVELfrplaEEKGIELeLDLPDDLPTVRGDP--DRLRQVLLnllsNAIKYTPEgg 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 350 PISLYCEATDTTVEVFVRDHGEGfdidtIPPDRL-------------------GIRESIIGRI-KRRGGTVEIVSRAGWG 409
Cdd:COG0642 244 TVTVSVRREGDRVRISVEDTGPG-----IPPEDLerifepffrtdpsrrgggtGLGLAIVKRIvELHGGTIEVESEPGKG 318
|
250
....*....|
gi 1307888527 410 TEVRMHMPIA 419
Cdd:COG0642 319 TTFTVTLPLA 328
|
|
| HATPase_RsbW-like |
cd16936 |
Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase ... |
339-416 |
2.10e-05 |
|
Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains; This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.
Pssm-ID: 340413 [Multi-domain] Cd Length: 91 Bit Score: 43.03 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 339 ALVNAVTHG-----SEPISLYCEATDTTVEVFVRDHGEGFDIDTIPPDRLGIRESiiGR----IKRRGGTVEIVSRAGwG 409
Cdd:cd16936 8 AVTNAVRHAyrhdgPGPVRLELDLDPDRLRVEVTDSGPGFDPLRPADPDAGLREG--GRglalIRALMDEVGYRRTPG-G 84
|
....*..
gi 1307888527 410 TEVRMHM 416
Cdd:cd16936 85 KTVWLEL 91
|
|
| COG3920 |
COG3920 |
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction ... |
31-419 |
2.18e-05 |
|
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction mechanisms];
Pssm-ID: 443125 [Multi-domain] Cd Length: 495 Bit Score: 46.44 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 31 IALHLGISVMWVRLAFIALTCLYGAGIIAYVFLWIFMPAGDPQAVASAEHIPVEQAPLARGNQAAQAGVEDTAASAESLS 110
Cdd:COG3920 82 LALLVLLLLLLLAAAALALALLLAALAGLLLLAALLLLRLVALLAALALLALLLLLLLLLAILALAELAVALAELAAALL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 111 EAIQRAPKPALVALAGFVLLTIGLLLVGTGADSQLIIPLLLGLAGIALAWMNLSPNGTQLLSMLGGIALIFIGWAVYVSN 190
Cdd:COG3920 162 LLAEELAALRLAAAALLLLLAALLDLGLALAALAAAALLALLLALELLLALLLLLLLLLALLLVLLAALLRLRAAVLEEL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 191 VTYAGWGTSPRRIMLSGFIMIACIVLAVMPWANAML--QRLSREQALKEREEERADMTAHLHDGV---LQTL-ALIQL-- 262
Cdd:COG3920 242 ERRRRARGLGRLLLLLLLLLLLLRALLLLAAGIRLVitERKRAEEELEASLEEKELLLRELHHRVknnLQVVsSLLRLqa 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 263 -HSEDPST----------VFTLARGQERelrewLYQERSTSDRSVSAGLKQIAAEVEDEHG-KPIEVVTVGDahpsaqtD 330
Cdd:COG3920 322 rRADDPEArealeesqnrIQALALVHEL-----LYQSEDWEGVDLRDYLRELLEPLRDSYGgRGIRIELDGP-------D 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 331 ALLDAtRQA----------LVNAVTHGSEP-----ISLYCEATDTTVEVFVRDHGEGFDIDTIPPDR--LGIR--ESIIG 391
Cdd:COG3920 390 VELPA-DAAvplglilnelVTNALKHAFLSgeggrIRVSWRREDGRLRLTVSDNGVGLPEDVDPPARkgLGLRliRALVR 468
|
410 420
....*....|....*....|....*...
gi 1307888527 392 RIkrrGGTVEIVSRAgwGTEVRMHMPIA 419
Cdd:COG3920 469 QL---GGTLELDRPE--GTRVRITFPLA 491
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
339-419 |
3.06e-04 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 39.94 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 339 ALVNAVTHGSE--PISLYCEATDTTVEVFVRDHGEGFDIDTI-----PPDRLGIRESIIG-----------RIKRRGGTV 400
Cdd:smart00387 13 LLDNAIKYTPEggRITVTLERDGDHVEITVEDNGPGIPPEDLekifePFFRTDKRSRKIGgtglglsivkkLVELHGGEI 92
|
90
....*....|....*....
gi 1307888527 401 EIVSRAGWGTEVRMHMPIA 419
Cdd:smart00387 93 SVESEPGGGTTFTITLPLE 111
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
330-419 |
4.48e-04 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 39.66 E-value: 4.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 330 DALLDATRQALVNAVTHGSEPISLYCEAT-DTTVEVFVRDHGEGFDIDTIPP-----DRLGIRE--------SIIGRIKR 395
Cdd:pfam02518 4 LRLRQVLSNLLDNALKHAAKAGEITVTLSeGGELTLTVEDNGIGIPPEDLPRifepfSTADKRGgggtglglSIVRKLVE 83
|
90 100
....*....|....*....|....*
gi 1307888527 396 R-GGTVEIVSRAGWGTEVRMHMPIA 419
Cdd:pfam02518 84 LlGGTITVESEPGGGTTVTLTLPLA 108
|
|
| YesM |
COG2972 |
Sensor histidine kinase YesM [Signal transduction mechanisms]; |
338-418 |
6.79e-04 |
|
Sensor histidine kinase YesM [Signal transduction mechanisms];
Pssm-ID: 442211 [Multi-domain] Cd Length: 445 Bit Score: 41.93 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 338 QALV-NAVTHGSEP------ISLYCEATDTTVEVFVRDHGEGFDIDTIPPDRLGIRESIIGR------IKRR-------G 397
Cdd:COG2972 342 QPLVeNAIEHGIEPkegggtIRISIRKEGDRLVITVEDNGVGMPEEKLEKLLEELSSKGEGRgiglrnVRERlklyygeE 421
|
90 100
....*....|....*....|.
gi 1307888527 398 GTVEIVSRAGWGTEVRMHMPI 418
Cdd:COG2972 422 YGLEIESEPGEGTTVTIRIPL 442
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
300-419 |
1.09e-03 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 41.10 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 300 LKQIAAEVEDEHGKP-IEVVT-VGDAHPSAQTDAllDATRQALVN-------AVTHGSEpISLYCEATDTTVEVFVRDHG 370
Cdd:COG5000 282 LREVLALYEPALKEKdIRLELdLDPDLPEVLADR--DQLEQVLINllknaieAIEEGGE-IEVSTRREDGRVRIEVSDNG 358
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1307888527 371 EGFDIDTIppDRL------------GIRESIIGRIKRR-GGTVEIVSRAGWGTEVRMHMPIA 419
Cdd:COG5000 359 PGIPEEVL--ERIfepffttkpkgtGLGLAIVKKIVEEhGGTIELESRPGGGTTFTIRLPLA 418
|
|
| COG4191 |
COG4191 |
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ... |
337-419 |
1.19e-03 |
|
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];
Pssm-ID: 443345 [Multi-domain] Cd Length: 361 Bit Score: 40.94 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 337 RQALVN-------AVTHGSEP-ISLYCEATDTTVEVFVRDHGEGfdidtIPPDrlgIRESI---------IGR------- 392
Cdd:COG4191 258 EQVLLNllinaidAMEEGEGGrITISTRREGDYVVISVRDNGPG-----IPPE---VLERIfepffttkpVGKgtglgls 329
|
90 100 110
....*....|....*....|....*....|..
gi 1307888527 393 -----IKRRGGTVEIVSRAGWGTEVRMHMPIA 419
Cdd:COG4191 330 isygiVEKHGGRIEVESEPGGGTTFTITLPLA 361
|
|
| WalK |
COG5002 |
Sensor histidine kinase WalK [Signal transduction mechanisms]; |
234-419 |
1.68e-03 |
|
Sensor histidine kinase WalK [Signal transduction mechanisms];
Pssm-ID: 444026 [Multi-domain] Cd Length: 390 Bit Score: 40.31 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 234 ALKEREEERADMTAHL-HDgvLQT-LALIQLHSEdpstvfTLARGQER---ELREWLYQERSTSDR------------SV 296
Cdd:COG5002 157 ELERLEQMRREFVANVsHE--LRTpLTSIRGYLE------LLLDGAADdpeERREYLEIILEEAERlsrlvndlldlsRL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 297 SAG----------LKQIAAEVEDE-----HGKPIEV-VTVGDAHPSAQTDAllDATRQALV----NAVTHGSE--PISLY 354
Cdd:COG5002 229 ESGelklekepvdLAELLEEVVEElrplaEEKGIELeLDLPEDPLLVLGDP--DRLEQVLTnlldNAIKYTPEggTITVS 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 355 CEATDTTVEVFVRDHGEGfdidtIPP-------DR----------------LG--IRESIigrIKRRGGTVEIVSRAGWG 409
Cdd:COG5002 307 LREEDDQVRISVRDTGIG-----IPEedlprifERfyrvdksrsretggtgLGlaIVKHI---VEAHGGRIWVESEPGKG 378
|
250
....*....|
gi 1307888527 410 TEVRMHMPIA 419
Cdd:COG5002 379 TTFTITLPLA 388
|
|
| PRK10697 |
PRK10697 |
envelope stress response membrane protein PspC; |
18-98 |
4.47e-03 |
|
envelope stress response membrane protein PspC;
Pssm-ID: 182656 Cd Length: 118 Bit Score: 36.85 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 18 PKRGRwLTGVCKGIALHLGISVMWVR-LAFIALTC-LYGAGIIAYVFLWIFM-PAgdPQAVASAEHIPVEQAPLARGNQA 94
Cdd:PRK10697 13 PQQGM-VKGVCAGIAHYFDVPVKLVRiIVVLSIFFgLFVFTLVAYIILSFALdPM--PDNMAFGEQQPSSSELLDEVDRE 89
|
....
gi 1307888527 95 AQAG 98
Cdd:PRK10697 90 LAAG 93
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
300-419 |
5.21e-03 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 39.00 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1307888527 300 LKQIAAEVEDEHGKPIE----VVTVGDAhPSAQTDALLdaTRQALV----NAVTHGSEP----ISLYCEATDTTVEVFVR 367
Cdd:COG4251 358 LNELLEEVLEDLEPRIEergaEIEVGPL-PTVRGDPTL--LRQVFQnlisNAIKYSRPGepprIEIGAEREGGEWVFSVR 434
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1307888527 368 DHGEGFDI---DTI--PPDRLGIRESI----IG-----RI-KRRGGTVEIVSRAGWGTEVRMHMPIA 419
Cdd:COG4251 435 DNGIGIDPeyaEKIfeIFQRLHSRDEYegtgIGlaivkKIvERHGGRIWVESEPGEGATFYFTLPKA 501
|
|
| |
