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Conserved domains on  [gi|1304875435|ref|XP_019669869|]
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40S ribosomal protein S27-like [Felis catus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S27e super family cl00897
Ribosomal protein S27;
7-82 7.05e-30

Ribosomal protein S27;


The actual alignment was detected with superfamily member PTZ00083:

Pssm-ID: 445165  Cd Length: 85  Bit Score: 100.90  E-value: 7.05e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1304875435  7 LLHLSPEKEKKKHRKKRLVHSPNSYSMDGKCPGRYKITTIFSQAQTLVLCVGCSIFLGQPTGGKARLTEGCSFRRK 82
Cdd:PTZ00083   8 LLYPDPESEARKHKLKRLVQGPNSYFMDVKCPGCSQITTVFSHAQTVVLCGGCSSQLCQPTGGKAKLTEGCSFRRK 83
 
Name Accession Description Interval E-value
PTZ00083 PTZ00083
40S ribosomal protein S27; Provisional
 7-82 7.05e-30

40S ribosomal protein S27; Provisional


Pssm-ID: 185434  Cd Length: 85  Bit Score: 100.90  E-value: 7.05e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1304875435  7 LLHLSPEKEKKKHRKKRLVHSPNSYSMDGKCPGRYKITTIFSQAQTLVLCVGCSIFLGQPTGGKARLTEGCSFRRK 82
Cdd:PTZ00083   8 LLYPDPESEARKHKLKRLVQGPNSYFMDVKCPGCSQITTVFSHAQTVVLCGGCSSQLCQPTGGKAKLTEGCSFRRK 83
Ribosomal_S27e pfam01667
Ribosomal protein S27;
28-82 4.67e-21

Ribosomal protein S27;


Pssm-ID: 279935  Cd Length: 55  Bit Score: 77.88  E-value: 4.67e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1304875435 28 PNSYSMDGKCPGRYKITTIFSQAQTLVLCVGCSIFLGQPTGGKARLTEGCSFRRK 82
Cdd:pfam01667  1 PNSYFLDVKCPGCGNITTVFSHAQTVVKCIICGKVLCEPTGGKAKLKAGISFRRK 55
RPS27A COG2051
Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 36-73 2.34e-03

Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S27E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441654  Cd Length: 60  Bit Score: 32.94  E-value: 2.34e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1304875435 36 KCPGRYKITTIFSQAQTLVLCVGCSIFLGQPTGGKARL 73
Cdd:COG2051   16 KCPDCGNEQIVFSHASTVVRCLVCGTTLAEPTGGKAKI 53
 
Name Accession Description Interval E-value
PTZ00083 PTZ00083
40S ribosomal protein S27; Provisional
 7-82 7.05e-30

40S ribosomal protein S27; Provisional


Pssm-ID: 185434  Cd Length: 85  Bit Score: 100.90  E-value: 7.05e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1304875435  7 LLHLSPEKEKKKHRKKRLVHSPNSYSMDGKCPGRYKITTIFSQAQTLVLCVGCSIFLGQPTGGKARLTEGCSFRRK 82
Cdd:PTZ00083   8 LLYPDPESEARKHKLKRLVQGPNSYFMDVKCPGCSQITTVFSHAQTVVLCGGCSSQLCQPTGGKAKLTEGCSFRRK 83
PLN00209 PLN00209
ribosomal protein S27; Provisional
 7-82 8.57e-30

ribosomal protein S27; Provisional


Pssm-ID: 165774  Cd Length: 86  Bit Score: 101.04  E-value: 8.57e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1304875435  7 LLHLSPEKEKKKHRKKRLVHSPNSYSMDGKCPGRYKITTIFSQAQTLVLCVGCSIFLGQPTGGKARLTEGCSFRRK 82
Cdd:PLN00209   9 LLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTGGKARLTEGCSFRKK 84
Ribosomal_S27e pfam01667
Ribosomal protein S27;
28-82 4.67e-21

Ribosomal protein S27;


Pssm-ID: 279935  Cd Length: 55  Bit Score: 77.88  E-value: 4.67e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1304875435 28 PNSYSMDGKCPGRYKITTIFSQAQTLVLCVGCSIFLGQPTGGKARLTEGCSFRRK 82
Cdd:pfam01667  1 PNSYFLDVKCPGCGNITTVFSHAQTVVKCIICGKVLCEPTGGKAKLKAGISFRRK 55
rps27e PRK00415
30S ribosomal protein S27e; Reviewed
 36-73 1.14e-03

30S ribosomal protein S27e; Reviewed


Pssm-ID: 179013  Cd Length: 59  Bit Score: 33.72  E-value: 1.14e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1304875435 36 KCPGRYKITTIFSQAQTLVLCVGCSIFLGQPTGGKARL 73
Cdd:PRK00415  13 KCPDCGNEQVVFSHASTVVRCLVCGKTLAEPTGGKAKI 50
RPS27A COG2051
Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 36-73 2.34e-03

Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S27E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441654  Cd Length: 60  Bit Score: 32.94  E-value: 2.34e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1304875435 36 KCPGRYKITTIFSQAQTLVLCVGCSIFLGQPTGGKARL 73
Cdd:COG2051   16 KCPDCGNEQIVFSHASTVVRCLVCGTTLAEPTGGKAKI 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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