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Conserved domains on  [gi|1304835446|gb|AUD52998|]
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vacuolar protein sorting 18 homolog, partial [Stereocyclops incrassatus]

Protein Classification

VPS18 family protein( domain architecture ID 10524018)

vacuolar sorting protein 18 (VPS18) family protein similar to Homo sapiens vacuolar protein sorting-associated protein 18 homolog that plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pep3_Vps18 pfam05131
Pep3/Vps18/deep orange family; This region is found in a number of protein identified as ...
 1-100 1.17e-38

Pep3/Vps18/deep orange family; This region is found in a number of protein identified as involved in golgi function and vacuolar sorting. The molecular function of this region is unknown. The members of this family contain a C-terminal ring finger domain.


:

Pssm-ID: 461557  Cd Length: 147  Bit Score: 133.80  E-value: 1.17e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1304835446   1 LLLLPDRIKAICTLNGQVVFEDVFTEKFGP-LKRMVKDPVIGQIWIHTERAVYRYHVEREQRDVWKMYMNIGKFDLAKEF 79
Cdd:pfam05131  48 LLLYGDRVVAVNRLNGEVVFEESLPLSPGEkLLGLTADPVKNTFWLYTDQSIFEIVVTDEDRDVWKIYLEKGQFDLALQY 127

                          90       100
                  ....*....|....*....|.
gi 1304835446  80 CKDrPECMDMVLAKEAEHCFQ 100
Cdd:pfam05131 128 AKN-PAQRDAVLTAQADYLFS 147
 
Name Accession Description Interval E-value
Pep3_Vps18 pfam05131
Pep3/Vps18/deep orange family; This region is found in a number of protein identified as ...
 1-100 1.17e-38

Pep3/Vps18/deep orange family; This region is found in a number of protein identified as involved in golgi function and vacuolar sorting. The molecular function of this region is unknown. The members of this family contain a C-terminal ring finger domain.


Pssm-ID: 461557  Cd Length: 147  Bit Score: 133.80  E-value: 1.17e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1304835446   1 LLLLPDRIKAICTLNGQVVFEDVFTEKFGP-LKRMVKDPVIGQIWIHTERAVYRYHVEREQRDVWKMYMNIGKFDLAKEF 79
Cdd:pfam05131  48 LLLYGDRVVAVNRLNGEVVFEESLPLSPGEkLLGLTADPVKNTFWLYTDQSIFEIVVTDEDRDVWKIYLEKGQFDLALQY 127

                          90       100
                  ....*....|....*....|.
gi 1304835446  80 CKDrPECMDMVLAKEAEHCFQ 100
Cdd:pfam05131 128 AKN-PAQRDAVLTAQADYLFS 147
 
Name Accession Description Interval E-value
Pep3_Vps18 pfam05131
Pep3/Vps18/deep orange family; This region is found in a number of protein identified as ...
 1-100 1.17e-38

Pep3/Vps18/deep orange family; This region is found in a number of protein identified as involved in golgi function and vacuolar sorting. The molecular function of this region is unknown. The members of this family contain a C-terminal ring finger domain.


Pssm-ID: 461557  Cd Length: 147  Bit Score: 133.80  E-value: 1.17e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1304835446   1 LLLLPDRIKAICTLNGQVVFEDVFTEKFGP-LKRMVKDPVIGQIWIHTERAVYRYHVEREQRDVWKMYMNIGKFDLAKEF 79
Cdd:pfam05131  48 LLLYGDRVVAVNRLNGEVVFEESLPLSPGEkLLGLTADPVKNTFWLYTDQSIFEIVVTDEDRDVWKIYLEKGQFDLALQY 127

                          90       100
                  ....*....|....*....|.
gi 1304835446  80 CKDrPECMDMVLAKEAEHCFQ 100
Cdd:pfam05131 128 AKN-PAQRDAVLTAQADYLFS 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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