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Conserved domains on  [gi|1301392459|gb|PKB60382|]
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MAG: ATP synthase F1 subunit epsilon [SAR202 cluster bacterium Ae2-Chloro-G1]

Protein Classification

FoF1 ATP synthase subunit epsilon( domain architecture ID 11479057)

FoF1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Gene Ontology:  GO:0045261|GO:0046933|GO:0005524|GO:0005886
SCOP:  3000182|3000785

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-120 5.12e-44

F0F1 ATP synthase subunit epsilon; Validated


:

Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 141.05  E-value: 5.12e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKE-GEDTYLAVSGGFIEVLDDRVTVLADAA 79
Cdd:PRK00571    4 LTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDdGEEEVIAVSGGFLEVQPDKVTVLADSA 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  80 EKSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRA 120
Cdd:PRK00571   84 ERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARA 124
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-120 5.12e-44

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 141.05  E-value: 5.12e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKE-GEDTYLAVSGGFIEVLDDRVTVLADAA 79
Cdd:PRK00571    4 LTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDdGEEEVIAVSGGFLEVQPDKVTVLADSA 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  80 EKSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRA 120
Cdd:PRK00571   84 ERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARA 124
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 1-120 5.55e-43

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 138.40  E-value: 5.55e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKE-GEDTYLAVSGGFIEVLDDRVTVLADAA 79
Cdd:COG0355     1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEdGEEEYFAVSGGFLEVQPNKVTILADTA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  80 EKSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRA 120
Cdd:COG0355    81 ERAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARA 121
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 1-120 1.72e-40

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 131.87  E-value: 1.72e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKE-GEDTYLAVSGGFIEVLDDRVTVLADAA 79
Cdd:cd12152     1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEdGEEKYFAVSGGFLEVTPNRVTILADEA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  80 EKSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRA 120
Cdd:cd12152    81 ERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERA 121
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 1-120 1.86e-36

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 121.59  E-value: 1.86e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDT-YLAVSGGFIEVLDDRVTVLADAA 79
Cdd:TIGR01216   2 LKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWeHIAVSGGFAEVQPDKVTILADGA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  80 EKSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRA 120
Cdd:TIGR01216  82 VFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKA 122
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 1-79 3.69e-34

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 114.07  E-value: 3.69e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKE-GEDTYLAVSGGFIEVLDDRVTVLADAA 79
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEdGEEEYIAVSGGFLEVQPNKVTILADSA 80
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-120 5.12e-44

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 141.05  E-value: 5.12e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKE-GEDTYLAVSGGFIEVLDDRVTVLADAA 79
Cdd:PRK00571    4 LTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDdGEEEVIAVSGGFLEVQPDKVTVLADSA 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  80 EKSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRA 120
Cdd:PRK00571   84 ERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARA 124
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 1-120 5.55e-43

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 138.40  E-value: 5.55e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKE-GEDTYLAVSGGFIEVLDDRVTVLADAA 79
Cdd:COG0355     1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEdGEEEYFAVSGGFLEVQPNKVTILADTA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  80 EKSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRA 120
Cdd:COG0355    81 ERAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARA 121
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-122 3.34e-41

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 133.93  E-value: 3.34e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDTYLAVSGGFIEVLDDRVTVLADAAE 80
Cdd:PRK13446    5 LKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYVAVNGGFAEVSNNKVTVLAETAE 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1301392459  81 KSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRAQI 122
Cdd:PRK13446   85 RAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALI 126
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 1-120 1.72e-40

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 131.87  E-value: 1.72e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKE-GEDTYLAVSGGFIEVLDDRVTVLADAA 79
Cdd:cd12152     1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEdGEEKYFAVSGGFLEVTPNRVTILADEA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  80 EKSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRA 120
Cdd:cd12152    81 ERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERA 121
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 1-120 1.86e-36

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 121.59  E-value: 1.86e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDT-YLAVSGGFIEVLDDRVTVLADAA 79
Cdd:TIGR01216   2 LKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWeHIAVSGGFAEVQPDKVTILADGA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  80 EKSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRA 120
Cdd:TIGR01216  82 VFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKA 122
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 1-122 2.15e-35

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 119.33  E-value: 2.15e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDTYLAVSGGFIEVLDDRVTVLADAAE 80
Cdd:PRK14735    3 IHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRTPFAISGGFMEVLPHRVTILADTAE 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1301392459  81 KSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRAQI 122
Cdd:PRK14735   83 RADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMV 124
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 1-79 3.69e-34

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 114.07  E-value: 3.69e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKE-GEDTYLAVSGGFIEVLDDRVTVLADAA 79
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEdGEEEYIAVSGGFLEVQPNKVTILADSA 80
atpE CHL00063
ATP synthase CF1 epsilon subunit
 1-121 2.64e-26

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 96.09  E-value: 2.64e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDTYLAVSGGFIEVLDDRVTVLADAAE 80
Cdd:CHL00063    3 LNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEITILVNDAE 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  81 KSDEIDEQRALAAMERARDSLVNRESTIELEQVAVAMRRAQ 121
Cdd:CHL00063   83 KGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRAR 123
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 1-120 1.18e-21

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 84.04  E-value: 1.18e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGE-LLIRKEGEDTYLAVSGGFIEVLDDRVTVLADAA 79
Cdd:PRK13450    4 IKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTItKIIDENGEKKKIFTSSGVLKVENNEVYILCDAS 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1301392459  80 EKSDEIDEQRALAAMERARDSLVNREStIELEQVAVAMRRA 120
Cdd:PRK13450   84 EWPEEIDIKRAENAKKRAEERLRKKDE-IDVKRAELALFRA 123
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 1-97 3.09e-18

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 75.30  E-value: 3.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDTYLAVSGGFIEVLDDRVTVLADAAE 80
Cdd:PRK13444    6 LTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRISVEGGFCEVKDNQISILTDHGA 85

                          90
                  ....*....|....*..
gi 1301392459  81 KSDEIDEQRALAAMERA 97
Cdd:PRK13444   86 LKEDIDHEHEKKLLAEA 102
atpC PRK13449
ATP synthase F1 subunit epsilon;
4-80 9.38e-17

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 70.19  E-value: 9.38e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1301392459   4 EIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKE--GEDTYLAVSGGFIEVLDDRVTVLADAAE 80
Cdd:PRK13449    7 ELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSdgAAPEVFHVQGGFAEVNEKGLTILAEHAV 85
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-83 1.09e-16

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 70.05  E-value: 1.09e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDTYLA-VSGGFIEVLDDRVTVLADAA 79
Cdd:PRK13442    6 LHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAaVDGGFISFDSNKLTVLAERA 85


                  ....
gi 1301392459  80 EKSD 83
Cdd:PRK13442   86 ELVA 89
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 4-105 3.06e-13

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 62.48  E-value: 3.06e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   4 EIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDTYLAVSGGFIEVLDDRVTVLADAAEKSD 83
Cdd:PRK13448    7 DLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVLGGLAEVSEKGLTVLADVATSVA 86

                          90       100
                  ....*....|....*....|..
gi 1301392459  84 EIDEQRALAAMERARDSLVNRE 105
Cdd:PRK13448   87 DLDLAQFAATIAEMEAQLAGKV 108
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 4-121 4.67e-13

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 61.73  E-value: 4.67e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   4 EIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRK-EGEDTYLAVSGGFIEVLDDRVTVLADAAE-- 80
Cdd:PRK14736    7 DLVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTEtTGNGKRIYVRGGFAEIGPTSVTVLAERAApv 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1301392459  81 ---KSDEIDEQraLAAMERARDSLVNRESTIELEQVAVAMRRAQ 121
Cdd:PRK14736   87 eelTPEMIDRE--IEAVEMERDATQDLDKREALNAQIVQMQEAK 128
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 1-107 9.56e-13

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 61.30  E-value: 9.56e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDTYLAVSGGFIEVLDDRVTVLADAAE 80
Cdd:PRK13452    6 LKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQHTDVLYVSGGIVEVTPTRVTIMVDDME 85

                          90       100
                  ....*....|....*....|....*..
gi 1301392459  81 KSDEIDEQRALAAMERARDSLVNREST 107
Cdd:PRK13452   86 RAENLNQAEAEKARARAKEVLKNPDAS 112
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 1-97 7.34e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 57.87  E-value: 7.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDTYLAVSGGFIEVLDDRVTVLADAAE 80
Cdd:PRK13451    1 MKVKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVIIITEEAG 80

                          90
                  ....*....|....*..
gi 1301392459  81 KSDEIDEQRALAAMERA 97
Cdd:PRK13451   81 REEEISPHRYLGARERV 97
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 1-102 2.25e-10

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 54.93  E-value: 2.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIRKEGEDTYLAVSGGFIEVLDDRVTVLADAAE 80
Cdd:PRK13443    5 LQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYAVTGGFAEINATSISVLAEKAI 84

                          90       100
                  ....*....|....*....|..
gi 1301392459  81 KSDEIDEQRALAAMERARDSLV 102
Cdd:PRK13443   85 PVEELTGAVLDEFIAEARELAS 106
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 1-79 4.49e-07

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 45.63  E-value: 4.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1301392459   1 MRLEIITAERKVYDDDVELVVVPGSDGELGILSKHAPLMSTLQPGELLIR----KEGEDTYLaVSGGFIEVLDDRVTVLA 76
Cdd:PRK01474    5 ILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYiddmHKSENTYL-ISGGVTEVTGNYINIAT 83


                  ...
gi 1301392459  77 DAA 79
Cdd:PRK01474   84 ETA 86
ATP-synt_DE pfam00401
ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). ...
 83-120 3.08e-03

ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. This subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 459802  Cd Length: 45  Bit Score: 33.89  E-value: 3.08e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1301392459  83 DEIDEQRALAAMERARDSLVNRE-STIELEQVAVAMRRA 120
Cdd:pfam00401   1 EDIDVARAEEAKERAEERLAQAKqDDIDYARAQAALARA 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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