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Conserved domains on  [gi|1296614740|ref|WP_100778043|]
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flagellar biosynthesis protein FlhB [Lelliottia nimipressuralis]

Protein Classification

flagellar type III secretion system protein FlhB( domain architecture ID 10012530)

flagellar type III secretion system protein FlhB may be involved in the export of flagellum proteins; belongs to the EscU/YscU/HrcU family of type III secretion system proteins

Gene Symbol:  flhB
Gene Ontology:  GO:0009306|GO:0044780|GO:0016020
PubMed:  32157081|26244937

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-353 7.51e-160

flagellar type III secretion system protein FlhB;


:

Pssm-ID: 235569  Cd Length: 359  Bit Score: 452.69  E-value: 7.51e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   1 MAQGGDKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYY----QQLITESFTSVGMMAgrLDDSGALS 76
Cdd:PRK05702    3 EDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLarrlSGMLRALFSFDREII--FDPNDVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  77 QFLMLNVSVILRFIATLAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVL 156
Cdd:PRK05702   81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 157 YSMVHSSLNPLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQI 236
Cdd:PRK05702  161 YFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 237 KGRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLAR 316
Cdd:PRK05702  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLAR 320

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1296614740 317 AVYHSTRVNQQIPAQLFRAIAHVLTYVMQLKSWRTGQ 353
Cdd:PRK05702  321 ALYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGG 357
 
Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-353 7.51e-160

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 452.69  E-value: 7.51e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   1 MAQGGDKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYY----QQLITESFTSVGMMAgrLDDSGALS 76
Cdd:PRK05702    3 EDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLarrlSGMLRALFSFDREII--FDPNDVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  77 QFLMLNVSVILRFIATLAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVL 156
Cdd:PRK05702   81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 157 YSMVHSSLNPLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQI 236
Cdd:PRK05702  161 YFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 237 KGRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLAR 316
Cdd:PRK05702  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLAR 320

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1296614740 317 AVYHSTRVNQQIPAQLFRAIAHVLTYVMQLKSWRTGQ 353
Cdd:PRK05702  321 ALYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGG 357
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-347 2.71e-158

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 448.41  E-value: 2.71e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   1 MAQ--GGDKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYYQQLITESFTSVGMMAGRLD-DSGALSQ 77
Cdd:COG1377     1 MAEedDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARALAlDPADLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  78 FLMLNVSVILRFIAT-LAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVL 156
Cdd:COG1377    81 LLGALLLEALLALLPlLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 157 YSMVHSSLNPLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQI 236
Cdd:COG1377   161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 237 KGRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLAR 316
Cdd:COG1377   241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1296614740 317 AVYHSTRVNQQIPAQLFRAIAHVLTYVMQLK 347
Cdd:COG1377   321 ALYATVEVGQEIPEELYQAVAEVLAYVYQLK 351
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 6-343 2.48e-148

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 422.62  E-value: 2.48e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   6 DKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYYQQLITESFTSVGMMAGRLDDSGALSQFLMLNVSV 85
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAADPAALLALLLALLLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  86 ILRFIATLAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVLYSMVHSSLN 165
Cdd:pfam01312  81 LLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGNLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 166 PLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQIKGRIRQLQR 245
Cdd:pfam01312 161 ELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQR 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 246 QMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLARAVYHSTRVN 325
Cdd:pfam01312 241 EMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVEVG 320

                         330
                  ....*....|....*...
gi 1296614740 326 QQIPAQLFRAIAHVLTYV 343
Cdd:pfam01312 321 QEIPEELYQAVAEVLAYV 338
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 6-350 8.42e-119

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 348.10  E-value: 8.42e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   6 DKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYYQQLITE--SFTSVGMMAGRLDDSGALSQFLMLNV 83
Cdd:TIGR00328   1 EKTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVlmSFFLSFETSDILNLGSLVGIFFQSIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  84 SVILRFIATLAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVLYSMVHSS 163
Cdd:TIGR00328  81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 164 LNPLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQIKGRIRQL 243
Cdd:TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 244 QRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLARAVYHSTR 323
Cdd:TIGR00328 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVE 320

                         330       340
                  ....*....|....*....|....*..
gi 1296614740 324 VNQQIPAQLFRAIAHVLTYVMQLKSWR 350
Cdd:TIGR00328 321 IGQEIPPELYKAVAEVLAYVYKLKKKR 347
 
Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-353 7.51e-160

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 452.69  E-value: 7.51e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   1 MAQGGDKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYY----QQLITESFTSVGMMAgrLDDSGALS 76
Cdd:PRK05702    3 EDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLarrlSGMLRALFSFDREII--FDPNDVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  77 QFLMLNVSVILRFIATLAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVL 156
Cdd:PRK05702   81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 157 YSMVHSSLNPLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQI 236
Cdd:PRK05702  161 YFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 237 KGRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLAR 316
Cdd:PRK05702  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLAR 320

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1296614740 317 AVYHSTRVNQQIPAQLFRAIAHVLTYVMQLKSWRTGQ 353
Cdd:PRK05702  321 ALYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGG 357
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-347 2.71e-158

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 448.41  E-value: 2.71e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   1 MAQ--GGDKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYYQQLITESFTSVGMMAGRLD-DSGALSQ 77
Cdd:COG1377     1 MAEedDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARALAlDPADLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  78 FLMLNVSVILRFIAT-LAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVL 156
Cdd:COG1377    81 LLGALLLEALLALLPlLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 157 YSMVHSSLNPLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQI 236
Cdd:COG1377   161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 237 KGRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLAR 316
Cdd:COG1377   241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1296614740 317 AVYHSTRVNQQIPAQLFRAIAHVLTYVMQLK 347
Cdd:COG1377   321 ALYATVEVGQEIPEELYQAVAEVLAYVYQLK 351
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 6-343 2.48e-148

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 422.62  E-value: 2.48e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   6 DKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYYQQLITESFTSVGMMAGRLDDSGALSQFLMLNVSV 85
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAADPAALLALLLALLLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  86 ILRFIATLAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVLYSMVHSSLN 165
Cdd:pfam01312  81 LLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGNLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 166 PLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQIKGRIRQLQR 245
Cdd:pfam01312 161 ELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQR 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 246 QMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLARAVYHSTRVN 325
Cdd:pfam01312 241 EMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVEVG 320

                         330
                  ....*....|....*...
gi 1296614740 326 QQIPAQLFRAIAHVLTYV 343
Cdd:pfam01312 321 QEIPEELYQAVAEVLAYV 338
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 6-350 8.42e-119

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 348.10  E-value: 8.42e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   6 DKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYYQQLITE--SFTSVGMMAGRLDDSGALSQFLMLNV 83
Cdd:TIGR00328   1 EKTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVlmSFFLSFETSDILNLGSLVGIFFQSIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  84 SVILRFIATLAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVLYSMVHSS 163
Cdd:TIGR00328  81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 164 LNPLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQIKGRIRQL 243
Cdd:TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 244 QRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLARAVYHSTR 323
Cdd:TIGR00328 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVE 320

                         330       340
                  ....*....|....*....|....*..
gi 1296614740 324 VNQQIPAQLFRAIAHVLTYVMQLKSWR 350
Cdd:TIGR00328 321 IGQEIPPELYKAVAEVLAYVYKLKKKR 347
FlhB_rel_III TIGR01404
type III secretion protein, YscU/HrpY family; This model represents one of several families of ...
 5-346 1.40e-89

type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130471  Cd Length: 342  Bit Score: 273.38  E-value: 1.40e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   5 GDKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYYQQLITESFTSVGMMAGRLDDSgALSQFLMLNVS 84
Cdd:TIGR01404   1 AEKTEKPTPKKLRDARKKGQVAKSKDLTSAVLLLAGFFYLLSLASVFEEMLIALLILPLDFDDQPFAY-ALAQVLSGLLQ 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  85 VILRFIATLAPIPLACIVAS-LIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVLYSMVHSS 163
Cdd:TIGR01404  80 LILTVLLPLLAIVLLAGVLSgLLQVGFVLATEALKPDLSKLNPISGLKQIFSLRSLKELLKSILKLVALALIFYLFLKNY 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 164 LNPLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQIKGRIRQL 243
Cdd:TIGR01404 160 LKELFALPYCGLDGLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRREL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 244 QRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLARAVYHSTR 323
Cdd:TIGR01404 240 HQEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIPLARQLYRTAR 319

                         330       340
                  ....*....|....*....|...
gi 1296614740 324 VNQQIPAQLFRAIAHVLTYVMQL 346
Cdd:TIGR01404 320 VGQYIPEELFEAVAELLRWLEQV 342
EscU COG4792
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and ...
 5-346 7.69e-87

Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443821  Cd Length: 344  Bit Score: 266.38  E-value: 7.69e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   5 GDKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYYQQLITESFTSvgmMAGRLDD------SGALSQF 78
Cdd:COG4792     3 SEKTEQPTPKKLRDARKKGQVAKSKDIVSAVQLLALLGYLLLEGDALVEHLQALILL---PAQLLNLpfdealNQLLGAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  79 LMLNVSVILRFIATLApipLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVLYS 158
Cdd:COG4792    80 LELLLRLVLPLLAVLI---LATILSNVAQVGFLFATEAIKPKLEKINPVENLKRIFSLRSLVELLKSLLKVVLLGLIFYY 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 159 MVHSSLNPLLHLQRLNLNQAIHaGFGIFHHVLIYFISV-IVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQIK 237
Cdd:COG4792   157 LLRGYLPTLVYLPYCGLACAGP-VVGALLKWLWGVLLGaYLVFGLADYLFQRYQFRKQLRMSKDEVKREYKDMEGDPEIK 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 238 GRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLARA 317
Cdd:COG4792   236 QKRRRLHREIQSGSLALNVKRSSVVVRNPTHIAVGLRYVPGETPLPVVLEKGEDARAQQIVKLAEEEGVPVVENIPLARA 315

                         330       340
                  ....*....|....*....|....*....
gi 1296614740 318 VYHSTRVNQQIPAQLFRAIAHVLTYVMQL 346
Cdd:COG4792   316 LYADAGLGEYIPEDLFEPVAEVLRLALLL 344
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 6-358 2.09e-84

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 261.50  E-value: 2.09e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   6 DKSEKPTPQKLRKAREKGDLPRSKDLT----MAVGLLTSFITLSSFFPYYQQLITESFT-SVGMMAgrlDDSGALSQFLM 80
Cdd:PRK12468    8 EKSEEPTASKLEKAREKGQIPRSRELTsmlmLGAGLTILWMSGESMARQLSAMVAQGLHfDHSMVS---NDKQMLRQIGM 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  81 LNVSVILRFIATLAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVLYSMV 160
Cdd:PRK12468   85 LLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 161 HSSLNPLLHLqrlnLNQAIHAGFGIFHHvLIYFISVIVIFAL-----LDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQ 235
Cdd:PRK12468  165 WHNWPDMMRL----IAAPPVAALGDALH-LIIFCGLVVVLGLspmvgFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPH 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 236 IKGRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLA 315
Cdd:PRK12468  240 VKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLA 319

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1296614740 316 RAVYHSTRVNQQIPAQLFRAIAHVLTYVMQLKSWRT--GQLEAKP 358
Cdd:PRK12468  320 RALFRHSEVGQHIPATLYAAVAEVLAWVYQLKRWKRegGLIPKKP 364
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
6-347 1.09e-82

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 263.85  E-value: 1.09e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   6 DKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYY----QQLITESFTSVGMMAGRLDDSGALSQFLML 81
Cdd:PRK12772  264 DKTEEATPKKKSDARKKGQIAKSKELALAITLLACTLVLSALGGYVantlKETMIYFLNNYLNMNLNYNSLNSLAIITLL 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  82 NVSVILRFIATlaPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVLYSMVH 161
Cdd:PRK12772  344 RVAKIFLPVAL--PIMVFGVAANLLQTGFLFTKEPLKPDLKKLNPINGFKRMFSMRSVMELLKDLTIITIVGIVGYKFLQ 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 162 SSLNPLLHLQRLNLNQAIHA----GFGIFHHVLIyfisVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQIK 237
Cdd:PRK12772  422 DNYLDILNLGNLYLPYIITElkslVISIFFRITL----IMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIK 497

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 238 GRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLARA 317
Cdd:PRK12772  498 AKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARL 577

                         330       340       350
                  ....*....|....*....|....*....|
gi 1296614740 318 VYHSTRVNQQIPAQLFRAIAHVLTYVMQLK 347
Cdd:PRK12772  578 IYKKVEIDQEIPQDMYQAVAEILAIVYKLK 607
PRK12721 PRK12721
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
5-346 5.80e-65

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 183700  Cd Length: 349  Bit Score: 210.30  E-value: 5.80e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   5 GDKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYYQQLITESFTSVgMMAGRLDDSGALSQFLMLNVS 84
Cdd:PRK12721    2 SEKTEKPTEKKLRDARKKGQVVKSVEITSGVQLAALLLYFLLEGPSLVEAIIGLINST-IQLLNKPFLYALTQILGAVLE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  85 VILRFIATLAP-IPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVLYSMVHSS 163
Cdd:PRK12721   81 VLLRFLLVLGAgLIVATVGTGIAQVGPLLASKAIGPKAEKINPVSNAKQIFSLKSVFELCKSLLKVVILSLIFAYLLHYY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 164 LNPLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQIKGRIRQL 243
Cdd:PRK12721  161 APSFAYLPYCGAACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRREL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 244 QRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLARAVYHSTR 323
Cdd:PRK12721  241 QSEIQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLARALFKEVE 320

                         330       340
                  ....*....|....*....|...
gi 1296614740 324 VNQQIPAQLFRAIAHVLTYVMQL 346
Cdd:PRK12721  321 CGDYIPETLFEPVAALLRMVMDI 343
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 1-343 1.50e-62

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 204.26  E-value: 1.50e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   1 MAQGGD---KSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITLSSFFPYYQQLITESFTSVgmmagrLDD------ 71
Cdd:PRK13109    1 MSDDTDkesKTEEATERKVRDAIEKGDIPVSREAPVFASMLGLLIALAFFARGQAAQLTGDLAPL------LDDprgfsl 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  72 -SGALSQFLMLNVSV-ILRFIATLAPIPLAC-IVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLK 148
Cdd:PRK13109   75 eTGADAMLLLSRVALaAGRFLLPILLILAVCgLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLFK 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 149 CGVI----LAVLYSMVHSSLNPL----LHLQRLNLNQAIHagfgifhhvLIYFISV--IVIFALlDVPLTKFMFTKKMRM 218
Cdd:PRK13109  155 FLSVsvvvLLLLRSERAKAVNAMfvdpSQLPELILTVAIR---------LVSAVAIatIVLVAL-DLVWARFHWRRSLRM 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 219 TKQEVKEEYKNNDGNPQIKGRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIR 298
Cdd:PRK13109  225 TKQEIKDEHKQAEGDPSVKARLRSLAQDRARNRMLANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIR 304

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1296614740 299 EVASQHQIEVVEFPPLARAVYHSTRVNQQIPAQLFRAIAHVLTYV 343
Cdd:PRK13109  305 EIAEENGIPVIEDKPLARSLYDAVQVDQVIPAEFYRPVAQILYFL 349
PRK06298 PRK06298
type III secretion system protein; Validated
 5-348 3.26e-51

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 174.65  E-value: 3.26e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   5 GDKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTS-FITL---SSFFPYYQQLITESFTSVGMmagRLDDSGALSQFLM 80
Cdd:PRK06298    2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSmFLTFslsSFFAKHLGSFLVSIFKTAPT---NHDPVVTVYYLKN 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  81 LNVSVILRFIATLAPIPLACIVASLIPGGWIFTLSKLKPDFKKISPISGVKRMFAASHYVEVGKMMLKCGVILAVLYSMV 160
Cdd:PRK06298   79 CLILILTASLPLLGAVAFVGVLVGFLIVGPTFSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIVL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 161 HSSLnPLLhLQRLNLNQAIHAGfgIFHHVLIYFISVIVIF----ALLDVPLTKFMFTKKMRMTKQEVKEEYKNNDGNPQI 236
Cdd:PRK06298  159 KNRV-PLI-IETAGVPPLVTAQ--IFKEILYKAVTSIGIFflvvAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEI 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 237 KGRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLAR 316
Cdd:PRK06298  235 KGRRRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAH 314

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1296614740 317 AVYHSTRVNQQIPAQLFRAIAHVLTYVMQLKS 348
Cdd:PRK06298  315 QLLDEGKELKFIPESTYEAIGEILLYITSLNA 346
PRK08156 PRK08156
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
1-323 3.49e-49

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 236168  Cd Length: 361  Bit Score: 169.42  E-value: 3.49e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   1 MAQggdKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLT------SFITLSSFFPYYQQLITESFtsvgmmagRLDDSGA 74
Cdd:PRK08156    1 MAN---KTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGgiaylvSFGSFSEFMSIYKRILADNF--------DINIGDY 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  75 LSQFLMLnvsvilrFIATLAPIPLACIVASLIPGgWI---FTLS--KLKPDFKKISPISGVKRMFAASHYVEVGKMMLKC 149
Cdd:PRK08156   70 FLAVMII-------FLKILIPFLLLCLLAGALPT-LLqtrFVLAteAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYL 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 150 GVILAVLYSMVHSSLNPLLHLQRLNLNQAIHAGFGIFHHVLIYFISVIVIFALLDVPLTKFMFTKKMRMTKQEVKEEYKN 229
Cdd:PRK08156  142 IVFALTAYVFWKNYKKEIFSQLNGNIVGLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKE 221

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 230 NDGNPQIKGRIRQLQRQMAMGQINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVV 309
Cdd:PRK08156  222 QEGNPEIKSKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVV 301

                         330
                  ....*....|....
gi 1296614740 310 EFPPLARAVYHSTR 323
Cdd:PRK08156  302 RDIKLARRLYKTHR 315
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
 2-350 6.40e-44

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 161.00  E-value: 6.40e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740   2 AQGGDKSEKPTPQKLRKAREKGDLPRSKDLTMAVGLLTSFITL----SSFFPYYQQLITESFTSVGMmagRLDDSGALSQ 77
Cdd:PRK12773  295 AEDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVylmgEYFFMRTYYILRKYIHGVGL---RTDMSSESVT 371

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740  78 FLMLNVSV-ILRFIATLAPIPL-ACIVASLIPGGWIFT-------LSKLKPDFKKISPISgvKRMFaashyvEVGKMMLK 148
Cdd:PRK12773  372 ELLKNASTdLFTLLWPLLGITLvGAIIGNVAQVGFIFTpralsfnFSRIRPNFKKVLPTR--QTLF------NLGKSLAK 443

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 149 CGVILAVLYSMVHSSLNPLLHLQRLNLNQAI----HAGFGIFHHVLIYFISVivifALLDVPLTKFMFTKKMRMTKQEVK 224
Cdd:PRK12773  444 VGLIAWVSYIIISKDFFPILLSGEMGLEQAValvmNSSFKIFLIVGIILLAI----SIVDYLYQRYEYEESLKMTPSEAK 519

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1296614740 225 EEYKNNDGNPQIKGRIRQLQRQMAMG-QINRTVPEADVIITNPTHFAVALKYDPNKAEAPYIVAKGVDDIALYIREVASQ 303
Cdd:PRK12773  520 REAKESDGDRSLQARRRQLARDMMNKrKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARE 599

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1296614740 304 HQIEVVEFPPLARAVYHSTRVNQQIPAQLFRAIAHVLTyvmQLKSWR 350
Cdd:PRK12773  600 NGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILS---RLESFR 643
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 270-347 5.91e-18

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 78.30  E-value: 5.91e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1296614740 270 AVALKYDPNKAEAPYIVAKGVDDIALYIREVASQHQIEVVEFPPLARAVYHsTRVNQQIPAQLFRAIAHVLTYVMQLK 347
Cdd:COG2257    11 AVALKYDGEKDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQ-LDLGDEIPPELYQAVAEILAFIYRLD 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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