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Conserved domains on  [gi|1293171540|ref|WP_100623315|]
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30S ribosomal protein S7 [Candidatus Coxiella mudrowiae]

Protein Classification

30S ribosomal protein S7( domain architecture ID 10792463)

30S ribosomal protein S7 is an assembly initiator protein which participates in the assembly of the bacterial 30S ribosomal subunit

Gene Symbol:  rpsG
Gene Ontology:  GO:0003735|GO:0015935|GO:0019843
PubMed:  11160889

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-193 6.43e-90

30S ribosomal protein S7; Validated


:

Pssm-ID: 235398  Cd Length: 156  Bit Score: 260.04  E-value: 6.43e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540   1 MARRKGAPKREIFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDVVAkhvrgkgrakeeggeggdkvgggakkkrg 80
Cdd:PRK05302    1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIE----------------------------- 51

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  81 geddirvnEKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANE 160
Cdd:PRK05302   52 --------EKTGKDPLEVFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANE 123

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1293171540 161 ILDAVENRGGAVKKKEDVHRMAKANQAFAHYRW 193
Cdd:PRK05302  124 LLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
 
Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-193 6.43e-90

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 260.04  E-value: 6.43e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540   1 MARRKGAPKREIFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDVVAkhvrgkgrakeeggeggdkvgggakkkrg 80
Cdd:PRK05302    1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIE----------------------------- 51

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  81 geddirvnEKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANE 160
Cdd:PRK05302   52 --------EKTGKDPLEVFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANE 123

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1293171540 161 ILDAVENRGGAVKKKEDVHRMAKANQAFAHYRW 193
Cdd:PRK05302  124 LLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-193 6.78e-90

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 259.99  E-value: 6.78e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540   1 MARRKGAPKREIFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDVVAkhvrgkgrakeeggeggdkvgggakkkrg 80
Cdd:COG0049     1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIE----------------------------- 51

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  81 geddirvnEKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANE 160
Cdd:COG0049    52 --------EKTGEDPLEVFEKALENVKPLVEVKSRRVGGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANE 123

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1293171540 161 ILDAVENRGGAVKKKEDVHRMAKANQAFAHYRW 193
Cdd:COG0049   124 LLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 12-186 1.18e-68

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 205.37  E-value: 1.18e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  12 IFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDVVAKhvrgkgrakeeggeggdkvgggakkkrggeddirvneKT 91
Cdd:cd14869     1 ILPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKK-------------------------------------KT 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  92 RAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANEILDAVENRGGA 171
Cdd:cd14869    44 GKDPLEVFEKALENVKPLVEVRSRRVGGATYQVPVEVRPERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAA 123

                         170
                  ....*....|....*
gi 1293171540 172 VKKKEDVHRMAKANQ 186
Cdd:cd14869   124 VKKKEDTHKMAEANK 138
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 3-193 1.65e-66

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 200.60  E-value: 1.65e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540   3 RRKGAPKREIFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDVVAKhvrgkgrakeeggeggdkvgggakkkrgge 82
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAK------------------------------ 50

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  83 ddirvneKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANEIL 162
Cdd:TIGR01029  51 -------KTGEDPLEVFEQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEIL 123

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1293171540 163 DAVENRGGAVKKKEDVHRMAKANQAFAHYRW 193
Cdd:TIGR01029 124 DAANNTGAAIKKREDTHRMAEANKAFAHYRW 154
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-185 5.46e-64

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 193.37  E-value: 5.46e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  18 FRSELLAKFINTVIRNGKKSVAESIVYGALDVVAkhvrgkgrakeeggeggdkvgggakkkrggeddirvnEKTRAVALD 97
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIE-------------------------------------EKTGKNPLE 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  98 TFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANEILDAVENRGGAVKKKED 177
Cdd:pfam00177  44 VFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEE 123


                  ....*...
gi 1293171540 178 VHRMAKAN 185
Cdd:pfam00177 124 THRMAEAN 131
 
Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-193 6.43e-90

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 260.04  E-value: 6.43e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540   1 MARRKGAPKREIFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDVVAkhvrgkgrakeeggeggdkvgggakkkrg 80
Cdd:PRK05302    1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIE----------------------------- 51

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  81 geddirvnEKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANE 160
Cdd:PRK05302   52 --------EKTGKDPLEVFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANE 123

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1293171540 161 ILDAVENRGGAVKKKEDVHRMAKANQAFAHYRW 193
Cdd:PRK05302  124 LLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-193 6.78e-90

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 259.99  E-value: 6.78e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540   1 MARRKGAPKREIFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDVVAkhvrgkgrakeeggeggdkvgggakkkrg 80
Cdd:COG0049     1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIE----------------------------- 51

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  81 geddirvnEKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANE 160
Cdd:COG0049    52 --------EKTGEDPLEVFEKALENVKPLVEVKSRRVGGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANE 123

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1293171540 161 ILDAVENRGGAVKKKEDVHRMAKANQAFAHYRW 193
Cdd:COG0049   124 LLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 12-186 1.18e-68

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 205.37  E-value: 1.18e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  12 IFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDVVAKhvrgkgrakeeggeggdkvgggakkkrggeddirvneKT 91
Cdd:cd14869     1 ILPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKK-------------------------------------KT 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  92 RAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANEILDAVENRGGA 171
Cdd:cd14869    44 GKDPLEVFEKALENVKPLVEVRSRRVGGATYQVPVEVRPERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAA 123

                         170
                  ....*....|....*
gi 1293171540 172 VKKKEDVHRMAKANQ 186
Cdd:cd14869   124 VKKKEDTHKMAEANK 138
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 3-193 1.65e-66

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 200.60  E-value: 1.65e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540   3 RRKGAPKREIFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDVVAKhvrgkgrakeeggeggdkvgggakkkrgge 82
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAK------------------------------ 50

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  83 ddirvneKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANEIL 162
Cdd:TIGR01029  51 -------KTGEDPLEVFEQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEIL 123

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1293171540 163 DAVENRGGAVKKKEDVHRMAKANQAFAHYRW 193
Cdd:TIGR01029 124 DAANNTGAAIKKREDTHRMAEANKAFAHYRW 154
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-185 5.46e-64

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 193.37  E-value: 5.46e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  18 FRSELLAKFINTVIRNGKKSVAESIVYGALDVVAkhvrgkgrakeeggeggdkvgggakkkrggeddirvnEKTRAVALD 97
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIE-------------------------------------EKTGKNPLE 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  98 TFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANEILDAVENRGGAVKKKED 177
Cdd:pfam00177  44 VFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEE 123


                  ....*...
gi 1293171540 178 VHRMAKAN 185
Cdd:pfam00177 124 THRMAEAN 131
rps7 CHL00053
ribosomal protein S7
 1-192 3.92e-55

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 171.99  E-value: 3.92e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540   1 MARRKGAPKREIFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDvvakhvrgkgrakeeggeggdkvgggakkkrg 80
Cdd:CHL00053    1 MSRRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALK-------------------------------- 48

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  81 geddiRVNEKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANE 160
Cdd:CHL00053   49 -----KIQQKTEKNPLSVLRQAIRNVTPDVEVKARRVGGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSE 123

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1293171540 161 ILDAVENRGGAVKKKEDVHRMAKANQAFAHYR 192
Cdd:CHL00053  124 LVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 9-191 5.78e-53

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 165.91  E-value: 5.78e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540   9 KREIFPDPLFRSELLAKFINTVIRNGKKSVAESIVYGALDvvakhvrgkgrakeeggeggdkvgggakkkrggeddiRVN 88
Cdd:cd14871     1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALK-------------------------------------EIK 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  89 EKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANEILDAVENR 168
Cdd:cd14871    44 QKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVPVEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNT 123

                         170       180
                  ....*....|....*....|...
gi 1293171540 169 GGAVKKKEDVHRMAKANQAFAHY 191
Cdd:cd14871   124 GNAIRKKEETHRMAEANKAFAHF 146
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 18-192 3.45e-36

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 125.05  E-value: 3.45e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  18 FRSELLAKFINTVIRNGKKSVAESIVYGALDVVAKH-VRGKGRAKEEGGeggdkvgggakkkrggeDDIRVNEKTraval 96
Cdd:cd14870    46 FYDPLVSKFINMMMKKGNKELAREIVEKTLENIKRIqLEKYHKATDEEK-----------------ESIELNPLV----- 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  97 dTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYA-NKRNEKTMILRLANEILDAVENRGGAVKKK 175
Cdd:cd14870   104 -IFHKAVENCKPLLGLTSVKRGGKTYQVPVPITPNRARFLAMKWLIEACrEKKRKIRFPEKLARELLDASNNQGKVVKKK 182

                         170
                  ....*....|....*..
gi 1293171540 176 EDVHRMAKANQAFAHYR 192
Cdd:cd14870   183 QELHKQCEANRAYAHYR 199
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 20-193 1.67e-29

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 106.31  E-value: 1.67e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  20 SELLAKFINTVIRNGKKSVAESIVYGALDVVAKHvrgkgrakeeggeggdkvgggakkkrggeddirvNEKTRAVALDTF 99
Cdd:cd15484     1 KLLIKKFVNFLMKKGKKTKARTILFKTFHLLKQK----------------------------------QSAQTEDVLVIL 46

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540 100 KKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILR------LANEILDAVENRGGAVK 173
Cdd:cd15484    47 VTAVENVKPSFEVRKVRIAGTTQLIPAALSPNKQETLAIRWILEAAKKKQRKQSKKRysfaycLADEILDASKKQGKARQ 126

                         170       180
                  ....*....|....*....|
gi 1293171540 174 KKEDVHRMAKANQAFAHYRW 193
Cdd:cd15484   127 KRDELHKLAEANRSLAHYRW 146
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 22-186 1.21e-27

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 100.79  E-value: 1.21e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  22 LLAKFINTVIRNGKKSVAESIVYGALdvvakhvrgkgrakeeggeggdkvgggakkkrggeddIRVNEKTRAVALDTFKK 101
Cdd:cd00323     3 LLKKFINILMKDGKKSKAEKIFSKAL-------------------------------------KILKKKTKKNPLKLLVE 45

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540 102 ALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANEILDAVENRGGAVKKKEDVHRM 181
Cdd:cd00323    46 AIENIKPLVEVRSIKKRGKVYQVPVPLSPNRQVSLAIKWLLKAVRKRKETSFAERLANEILDASNNKGASIKKKDDLHKL 125


                  ....*
gi 1293171540 182 AKANQ 186
Cdd:cd00323   126 AEANR 130
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 21-185 4.31e-21

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 84.55  E-value: 4.31e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  21 ELLAKFINTVIRNGKKSVAESIVYGALDvvakHVRgkgrakeeggeggdkvgggakkkrggeddirvnEKTRAVALDTFK 100
Cdd:cd14868    23 PLLEQLTNLIMKHGKKAKAQRIVSRALL----HIH---------------------------------TLTRADPLPLLR 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540 101 KALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANKRNEKTMILRLANEILDAVENRGGAVKKKEDVHR 180
Cdd:cd14868    66 QAIDSAAPLVKIKSQKKGAKNVQVPVPLNERQRRRKAIKWILEASDKRPGKSFSERLAEEIIAVVEGTSSALEKKEQVHK 145


                  ....*
gi 1293171540 181 MAKAN 185
Cdd:cd14868   146 LAVAN 150
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 87-185 2.29e-08

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 51.40  E-value: 2.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  87 VNEKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANK---RNEKTMILRLANEILD 163
Cdd:cd14867    81 IHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREaafRNIKSIAECLADELIN 160

                          90       100
                  ....*....|....*....|....
gi 1293171540 164 AVEN--RGGAVKKKEDVHRMAKAN 185
Cdd:cd14867   161 AAKGssNSYAIKKKDELERVAKSN 184
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 87-184 3.03e-07

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 48.36  E-value: 3.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1293171540  87 VNEKTRAVALDTFKKALGNVMPSVEVKSRRVGGSTYQVPVEIRAVRRQALAMRWLSEYANK---RNEKTMILRLANEILD 163
Cdd:PRK04027   91 IEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQasfKNKKSIEEALAEEIIA 170

                          90       100
                  ....*....|....*....|...
gi 1293171540 164 AVEN--RGGAVKKKEDVHRMAKA 184
Cdd:PRK04027  171 AANNdpKSYAVRKKEEIERVAKS 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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