transcription factor MYB44-like [Cucurbita maxima]
SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)
SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein
List of domain hits
Name | Accession | Description | Interval | E-value | |||
PLN03091 super family | cl33633 | hypothetical protein; Provisional |
39-152 | 1.52e-31 | |||
hypothetical protein; Provisional The actual alignment was detected with superfamily member PLN03091: Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 119.70 E-value: 1.52e-31
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Name | Accession | Description | Interval | E-value | |||
PLN03091 | PLN03091 | hypothetical protein; Provisional |
39-152 | 1.52e-31 | |||
hypothetical protein; Provisional Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 119.70 E-value: 1.52e-31
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REB1 | COG5147 | Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
36-139 | 7.19e-20 | |||
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]; Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 87.54 E-value: 7.19e-20
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Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
93-136 | 1.85e-15 | |||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 67.91 E-value: 1.85e-15
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SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
41-83 | 1.04e-14 | |||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 65.67 E-value: 1.04e-14
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SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
39-83 | 1.09e-14 | |||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 65.71 E-value: 1.09e-14
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Name | Accession | Description | Interval | E-value | |||
PLN03091 | PLN03091 | hypothetical protein; Provisional |
39-152 | 1.52e-31 | |||
hypothetical protein; Provisional Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 119.70 E-value: 1.52e-31
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PLN03212 | PLN03212 | Transcription repressor MYB5; Provisional |
39-150 | 1.98e-26 | |||
Transcription repressor MYB5; Provisional Pssm-ID: 178751 [Multi-domain] Cd Length: 249 Bit Score: 102.46 E-value: 1.98e-26
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REB1 | COG5147 | Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
36-139 | 7.19e-20 | |||
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]; Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 87.54 E-value: 7.19e-20
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Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
93-136 | 1.85e-15 | |||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 67.91 E-value: 1.85e-15
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Myb_DNA-bind_6 | pfam13921 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
42-100 | 3.49e-15 | |||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 67.34 E-value: 3.49e-15
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SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
41-83 | 1.04e-14 | |||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 65.67 E-value: 1.04e-14
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SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
39-83 | 1.09e-14 | |||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 65.71 E-value: 1.09e-14
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Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
39-85 | 2.07e-14 | |||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 64.83 E-value: 2.07e-14
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SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
93-136 | 4.71e-12 | |||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 58.74 E-value: 4.71e-12
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SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
92-138 | 7.59e-12 | |||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 58.39 E-value: 7.59e-12
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Myb_DNA-bind_6 | pfam13921 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
94-143 | 2.12e-09 | |||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 51.93 E-value: 2.12e-09
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SANT_TRF | cd11660 | Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ... |
41-83 | 3.13e-04 | |||
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Pssm-ID: 212558 [Multi-domain] Cd Length: 50 Bit Score: 37.55 E-value: 3.13e-04
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Blast search parameters | ||||
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