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Conserved domains on  [gi|1280074457|gb|ATY36931|]
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cytochrome b, partial (mitochondrion) [Sinipta hectorisperonii]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-100 7.93e-71

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 214.26  E-value: 7.93e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00156   61 RDVNY-GWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNL 139

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00156  140 LSAIPYLGTDLVQWIWGGFS 159
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-100 7.93e-71

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 214.26  E-value: 7.93e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00156   61 RDVNY-GWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNL 139

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00156  140 LSAIPYLGTDLVQWIWGGFS 159
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-99 3.52e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 131.34  E-value: 3.52e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   5 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMH--TWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLS 82
Cdd:cd00284    66 NFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFS 145

                          90
                  ....*....|....*..
gi 1280074457  83 AIPYLGTDLVQWVWGGF 99
Cdd:cd00284   146 AIPVIGITLVEWLWGGF 162
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-100 7.67e-40

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 135.69  E-value: 7.67e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMH--TWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVIT 78
Cdd:COG1290    80 RDVPG-GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVIT 158

                          90       100
                  ....*....|....*....|..
gi 1280074457  79 NLLSAIPYLGTDLVQWVWGGFA 100
Cdd:COG1290   159 GLFGAIPVIGTWLVTWLFGGEF 180
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
5-99 8.13e-38

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 125.19  E-value: 8.13e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   5 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMH--TWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLS 82
Cdd:pfam00033  57 NFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLS 136

                          90
                  ....*....|....*..
gi 1280074457  83 AIPYLGTDLVQWVWGGF 99
Cdd:pfam00033 137 AIPVIGDTLVEWIWGSF 153
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-100 7.93e-71

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 214.26  E-value: 7.93e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00156   61 RDVNY-GWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNL 139

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00156  140 LSAIPYLGTDLVQWIWGGFS 159
CYTB MTH00100
cytochrome b; Provisional
 1-100 3.07e-65

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 201.02  E-value: 3.07e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00100   71 RDVNY-GWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNL 149

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00100  150 LSAIPYIGTTLVEWIWGGFS 169
CYTB MTH00119
cytochrome b; Provisional
 1-100 3.90e-65

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 200.51  E-value: 3.90e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00119   72 RDVQY-GWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNL 150

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00119  151 LSAIPYIGQTLVEWIWGGFS 170
CYTB MTH00074
cytochrome b; Provisional
 1-100 3.10e-63

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 195.67  E-value: 3.10e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00074   72 RDVNY-GWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNL 150

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00074  151 LSAIPYMGDTLVQWIWGGFS 170
CYTB MTH00191
cytochrome b; Provisional
 1-100 5.92e-62

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 192.05  E-value: 5.92e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00191   68 RDVNY-GWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNL 146

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00191  147 LSAIPYIGDDLVQWLWGGFS 166
CYTB MTH00145
cytochrome b; Provisional
 1-100 2.33e-61

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 190.89  E-value: 2.33e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00145   72 RDVNY-GWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNL 150

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00145  151 LSAIPYVGKMLVEWVWGGFS 170
CYTB MTH00131
cytochrome b; Provisional
 1-100 1.30e-60

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 189.09  E-value: 1.30e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00131   71 RDVNY-GWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNL 149

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00131  150 LSAVPYVGNTLVQWIWGGFS 169
CYTB MTH00016
cytochrome b; Validated
 1-100 3.46e-58

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 182.95  E-value: 3.46e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00016   72 RDVNY-GWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNL 150

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00016  151 LSAIPYIGKMLVQWLWGGFS 170
CYTB MTH00034
cytochrome b; Validated
 1-100 4.83e-55

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 174.89  E-value: 4.83e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00034   71 RDVNY-GWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNL 149

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00034  150 VSAVPYIGTDIVQWIWGGFS 169
CYTB MTH00022
cytochrome b; Validated
 1-100 9.85e-51

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 163.72  E-value: 9.85e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00022   70 RDVNY-GFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNL 148

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00022  149 LSAIPYVGTDIVQWVWGGFS 168
CYTB MTH00224
cytochrome b; Provisional
 1-100 8.23e-49

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 158.55  E-value: 8.23e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00224   72 RDVNY-GWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNL 150

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00224  151 FSAIPYIGKDLVEWIWGGFA 170
CYTB MTH00053
cytochrome b; Provisional
 1-100 2.54e-46

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 152.17  E-value: 2.54e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00053   72 RDVNY-GFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNL 150

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00053  151 LSAIPYVGDDIVRWVWGGFS 170
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-99 3.52e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 131.34  E-value: 3.52e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   5 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMH--TWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLS 82
Cdd:cd00284    66 NFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFS 145

                          90
                  ....*....|....*..
gi 1280074457  83 AIPYLGTDLVQWVWGGF 99
Cdd:cd00284   146 AIPVIGITLVEWLWGGF 162
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-100 7.67e-40

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 135.69  E-value: 7.67e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMH--TWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVIT 78
Cdd:COG1290    80 RDVPG-GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVIT 158

                          90       100
                  ....*....|....*....|..
gi 1280074457  79 NLLSAIPYLGTDLVQWVWGGFA 100
Cdd:COG1290   159 GLFGAIPVIGTWLVTWLFGGEF 180
CYTB MTH00033
cytochrome b; Provisional
 1-100 4.07e-38

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 130.83  E-value: 4.07e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   1 RDVNNnGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNL 80
Cdd:MTH00033   68 RDVNY-GWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNL 146

                          90       100
                  ....*....|....*....|
gi 1280074457  81 LSAIPYLGTDLVQWVWGGFA 100
Cdd:MTH00033  147 VSAIPSVGGSIVEWIWGGFS 166
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
5-99 8.13e-38

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 125.19  E-value: 8.13e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   5 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMH--TWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLS 82
Cdd:pfam00033  57 NFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLS 136

                          90
                  ....*....|....*..
gi 1280074457  83 AIPYLGTDLVQWVWGGF 99
Cdd:pfam00033 137 AIPVIGDTLVEWIWGSF 153
CYTB MTH00086
cytochrome b; Provisional
 5-99 1.14e-37

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 129.29  E-value: 1.14e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   5 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAI 84
Cdd:MTH00086   63 NFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVI 142

                          90
                  ....*....|....*
gi 1280074457  85 PYLGTDLVQWVWGGF 99
Cdd:MTH00086  143 PIWGPSIVMWIWGGF 157
CYTB MTH00046
cytochrome b; Validated
 8-99 6.16e-24

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 92.74  E-value: 6.16e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   8 WIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMHTWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYL 87
Cdd:MTH00046   68 WCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIV 147

                          90
                  ....*....|..
gi 1280074457  88 GTDLVQWVWGGF 99
Cdd:MTH00046  148 GSLVYKYIVGGF 159
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
19-99 4.48e-23

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 86.91  E-value: 4.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457  19 SMFFICIYLHVGRGIYYGSYMYMH--TWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 96
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80


                  ...
gi 1280074457  97 GGF 99
Cdd:pfam13631  81 GGP 83
PRK03735 PRK03735
cytochrome b6; Provisional
 5-98 6.57e-15

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 67.04  E-value: 6.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   5 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMH--TWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLS 82
Cdd:PRK03735   85 AFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAE 164

                          90
                  ....*....|....*.
gi 1280074457  83 AIPYLGTDLVQWVWGG 98
Cdd:PRK03735  165 AIPVIGDFIKTLLRGG 180
petB CHL00070
cytochrome b6
 5-98 2.59e-11

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 57.04  E-value: 2.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1280074457   5 NNGWIIRTLHANGASMFFICIYLHVGRGIYYGSYMYMH--TWLIGTVILFLVMATAFMGYVLPWGQMSFWGATVITNLLS 82
Cdd:CHL00070   77 NFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPE 156

                          90
                  ....*....|....*.
gi 1280074457  83 AIPYLGTDLVQWVWGG 98
Cdd:CHL00070  157 AIPVIGSPLVELLRGS 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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