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Conserved domains on  [gi|1279841926|ref|XP_022931509|]
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stress-response A/B barrel domain-containing protein UP3 [Cucurbita moschata]

Protein Classification

Dabb domain-containing protein( domain architecture ID 11277723)

Dabb domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dabb smart00886
Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is ...
 68-162 2.22e-14

Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


:

Pssm-ID: 214884  Cd Length: 97  Bit Score: 67.31  E-value: 2.22e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841926   68 FEHISLLKARENISEEEENDLLDYLYTTQYQMRGIVAVSLGRAC--GQNSESYTHGVYMRFQRKEDLEKFYVNPFYSRVL 145
Cdd:smart00886   1 IRHIVLFKLKDDASEEDIEELLEALEALKGLIPGILSIEVGRNVspEGRSGGYDHVLVSEFEDEEDLDAYQVHPAHVAVV 80

                           90
                   ....*....|....*..
gi 1279841926  146 NEHVMPYCHGLIHVDYE 162
Cdd:smart00886  81 ERLVPPLAEDRVVVDFE 97
ABM super family cl10022
Antibiotic biosynthesis monooxygenase; This domain is found in monooxygenases involved in the ...
 186-277 1.05e-03

Antibiotic biosynthesis monooxygenase; This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.


The actual alignment was detected with superfamily member smart00886:

Pssm-ID: 447883  Cd Length: 97  Bit Score: 37.65  E-value: 1.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841926  186 VLLIKFLQDSFGKPLEDALNSLEQLAIDNPSlIVQFTQGLNFNP--SCKEFTHGVVIRFRSIEAFEMFTGSSDYKDMWRS 263
Cdd:smart00886   4 IVLFKLKDDASEEDIEELLEALEALKGLIPG-ILSIEVGRNVSPegRSGGYDHVLVSEFEDEEDLDAYQVHPAHVAVVER 82

                           90
                   ....*....|....
gi 1279841926  264 KFQPIIQKTVSLHF 277
Cdd:smart00886  83 LVPPLAEDRVVVDF 96
 
Name Accession Description Interval E-value
Dabb smart00886
Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is ...
 68-162 2.22e-14

Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 214884  Cd Length: 97  Bit Score: 67.31  E-value: 2.22e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841926   68 FEHISLLKARENISEEEENDLLDYLYTTQYQMRGIVAVSLGRAC--GQNSESYTHGVYMRFQRKEDLEKFYVNPFYSRVL 145
Cdd:smart00886   1 IRHIVLFKLKDDASEEDIEELLEALEALKGLIPGILSIEVGRNVspEGRSGGYDHVLVSEFEDEEDLDAYQVHPAHVAVV 80

                           90
                   ....*....|....*..
gi 1279841926  146 NEHVMPYCHGLIHVDYE 162
Cdd:smart00886  81 ERLVPPLAEDRVVVDFE 97
Dabb pfam07876
Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is ...
 69-163 2.43e-08

Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 400293  Cd Length: 96  Bit Score: 50.75  E-value: 2.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841926  69 EHISLLKARENISEEEENDLLDYLYTTQYQMRGIVAVSLGR-ACGQNSESYTHGVYMRFQRKEDLEKFYVNPFYSRVLnE 147
Cdd:pfam07876   2 KHIVLFKLKDDAADEEIAEVLEGLEALAGKIPGIKSIEVGRnVSPEGAQGYDHVLISTFESLEDLKAYLAHPAHVEFV-E 80

                          90
                  ....*....|....*.
gi 1279841926 148 HVMPYCHGLIHVDYES 163
Cdd:pfam07876  81 LVKPLVEDRVVVDFEV 96
Dabb smart00886
Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is ...
 186-277 1.05e-03

Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 214884  Cd Length: 97  Bit Score: 37.65  E-value: 1.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841926  186 VLLIKFLQDSFGKPLEDALNSLEQLAIDNPSlIVQFTQGLNFNP--SCKEFTHGVVIRFRSIEAFEMFTGSSDYKDMWRS 263
Cdd:smart00886   4 IVLFKLKDDASEEDIEELLEALEALKGLIPG-ILSIEVGRNVSPegRSGGYDHVLVSEFEDEEDLDAYQVHPAHVAVVER 82

                           90
                   ....*....|....
gi 1279841926  264 KFQPIIQKTVSLHF 277
Cdd:smart00886  83 LVPPLAEDRVVVDF 96
Dabb pfam07876
Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is ...
 186-279 1.19e-03

Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 400293  Cd Length: 96  Bit Score: 37.27  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841926 186 VLLIKFLQDSFGKPLEDALNSLEQLAIDNPSlIVQFTQGLNFNPS-CKEFTHGVVIRFRSIEAFEMFTGSSDYKDMwRSK 264
Cdd:pfam07876   4 IVLFKLKDDAADEEIAEVLEGLEALAGKIPG-IKSIEVGRNVSPEgAQGYDHVLISTFESLEDLKAYLAHPAHVEF-VEL 81

                          90
                  ....*....|....*
gi 1279841926 265 FQPIIQKTVSLHFSV 279
Cdd:pfam07876  82 VKPLVEDRVVVDFEV 96
 
Name Accession Description Interval E-value
Dabb smart00886
Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is ...
 68-162 2.22e-14

Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 214884  Cd Length: 97  Bit Score: 67.31  E-value: 2.22e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841926   68 FEHISLLKARENISEEEENDLLDYLYTTQYQMRGIVAVSLGRAC--GQNSESYTHGVYMRFQRKEDLEKFYVNPFYSRVL 145
Cdd:smart00886   1 IRHIVLFKLKDDASEEDIEELLEALEALKGLIPGILSIEVGRNVspEGRSGGYDHVLVSEFEDEEDLDAYQVHPAHVAVV 80

                           90
                   ....*....|....*..
gi 1279841926  146 NEHVMPYCHGLIHVDYE 162
Cdd:smart00886  81 ERLVPPLAEDRVVVDFE 97
Dabb pfam07876
Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is ...
 69-163 2.43e-08

Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 400293  Cd Length: 96  Bit Score: 50.75  E-value: 2.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841926  69 EHISLLKARENISEEEENDLLDYLYTTQYQMRGIVAVSLGR-ACGQNSESYTHGVYMRFQRKEDLEKFYVNPFYSRVLnE 147
Cdd:pfam07876   2 KHIVLFKLKDDAADEEIAEVLEGLEALAGKIPGIKSIEVGRnVSPEGAQGYDHVLISTFESLEDLKAYLAHPAHVEFV-E 80

                          90
                  ....*....|....*.
gi 1279841926 148 HVMPYCHGLIHVDYES 163
Cdd:pfam07876  81 LVKPLVEDRVVVDFEV 96
Dabb smart00886
Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is ...
 186-277 1.05e-03

Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 214884  Cd Length: 97  Bit Score: 37.65  E-value: 1.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841926  186 VLLIKFLQDSFGKPLEDALNSLEQLAIDNPSlIVQFTQGLNFNP--SCKEFTHGVVIRFRSIEAFEMFTGSSDYKDMWRS 263
Cdd:smart00886   4 IVLFKLKDDASEEDIEELLEALEALKGLIPG-ILSIEVGRNVSPegRSGGYDHVLVSEFEDEEDLDAYQVHPAHVAVVER 82

                           90
                   ....*....|....
gi 1279841926  264 KFQPIIQKTVSLHF 277
Cdd:smart00886  83 LVPPLAEDRVVVDF 96
Dabb pfam07876
Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is ...
 186-279 1.19e-03

Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 400293  Cd Length: 96  Bit Score: 37.27  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841926 186 VLLIKFLQDSFGKPLEDALNSLEQLAIDNPSlIVQFTQGLNFNPS-CKEFTHGVVIRFRSIEAFEMFTGSSDYKDMwRSK 264
Cdd:pfam07876   4 IVLFKLKDDAADEEIAEVLEGLEALAGKIPG-IKSIEVGRNVSPEgAQGYDHVLISTFESLEDLKAYLAHPAHVEF-VEL 81

                          90
                  ....*....|....*
gi 1279841926 265 FQPIIQKTVSLHFSV 279
Cdd:pfam07876  82 VKPLVEDRVVVDFEV 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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