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Conserved domains on  [gi|1279841619|ref|XP_022931342|]
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protein FAR-RED ELONGATED HYPOCOTYL 3 [Cucurbita moschata]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-847 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 1619.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619   1 MDIDLRLPSGEHDK-DEEPNGINNMLDvEEKLHNGVIESGNnMVDATDGMHVEDGGDLNSPMLDMVMFKEDTNLEPLPGM 79
Cdd:PLN03097    1 MDIDLRLPSGDHDKeDEEPNGVDNMLS-EVKLHNGDMEIGN-VVDVAEEVLSIDGGDMNSPTGELVEFKEDTNLEPLSGM 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619  80 EFESHSEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGMKREYDKSFNRPRVRQTKQESENSTGRRACAK 159
Cdd:PLN03097   79 EFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENGTGRRSCAK 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 160 TDCKASMHVKRRADGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKNPFDKVRNFAFDAGD 239
Cdd:PLN03097  159 TDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDKGRNLGLEAGD 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 240 ARILLDFLTQMQNLNSNFFYAVDIGEDHRLRNLFWIDAKSRHDYIYFNDVVSLDTTYIRNKYKLPLAFFVGVNQHYQFML 319
Cdd:PLN03097  239 TKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFML 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 320 LGCALLSDESPTTYAWLLHVWLKAIGGQAPKVIITDHDKVLKSVIQEVLPNVYHHFTLWHILAKISENLGNVTKRHENFM 399
Cdd:PLN03097  319 LGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFM 398

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 400 AKFEKCIYRSWTTEEFEKRWWKLVDRFELREDELVQSLCEDQRQWAPTYMKDVFLAGMSVAQRSESVNSFLDKYLHKKTT 479
Cdd:PLN03097  399 AKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTT 478

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 480 VQEFVKQYESILQDRYEEEAKADSDTWNKQPTLRSPSPFEKSISGMYTHAVFKKFQVEVLGAVACFPRKEKEDEKSITYH 559
Cdd:PLN03097  479 VQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFR 558

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 560 VQDFEKNLVFIVVWNGLKSEVSCLCRLYEYKGYLCRHAMVVLQKCELSTIPTQYILKRWTRDAKSRHLLGEEPELVQSRV 639
Cdd:PLN03097  559 VQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQVQSRV 638

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 640 QRYNDLCQRALRLIEEGSLSQESYSVAAHALDETLGNCIGVNNSNRTFLEAGPSAAHSLLCIEEDSQIRNIGKTNKKKNP 719
Cdd:PLN03097  639 QRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGTSPTHGLLCIEDDNQSRSMTKTNKKKNP 718

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 720 TKKRKVNSEPDVMTVGAHDNLQHMDKLSSRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSH 799
Cdd:PLN03097  719 TKKRKVNSEQEVTTVAAQDSLQQMDKLSSRAVALESYYGTQQSVQGMVQLNLMAPTRDNYYGNQQTIQGLGQLNSIAPSH 798

                         810       820       830       840
                  ....*....|....*....|....*....|....*....|....*...
gi 1279841619 800 DGYYPAQPSIHGLGQMDFFRAPAGFAYGIRDDPNVRTTQLHDDASRHA 847
Cdd:PLN03097  799 DGYYGTQQSIHGLGQMDFFRTPAGFSYDIRDDPNVRTAQLHDDASRHA 846
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-847 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 1619.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619   1 MDIDLRLPSGEHDK-DEEPNGINNMLDvEEKLHNGVIESGNnMVDATDGMHVEDGGDLNSPMLDMVMFKEDTNLEPLPGM 79
Cdd:PLN03097    1 MDIDLRLPSGDHDKeDEEPNGVDNMLS-EVKLHNGDMEIGN-VVDVAEEVLSIDGGDMNSPTGELVEFKEDTNLEPLSGM 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619  80 EFESHSEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGMKREYDKSFNRPRVRQTKQESENSTGRRACAK 159
Cdd:PLN03097   79 EFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENGTGRRSCAK 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 160 TDCKASMHVKRRADGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKNPFDKVRNFAFDAGD 239
Cdd:PLN03097  159 TDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDKGRNLGLEAGD 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 240 ARILLDFLTQMQNLNSNFFYAVDIGEDHRLRNLFWIDAKSRHDYIYFNDVVSLDTTYIRNKYKLPLAFFVGVNQHYQFML 319
Cdd:PLN03097  239 TKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFML 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 320 LGCALLSDESPTTYAWLLHVWLKAIGGQAPKVIITDHDKVLKSVIQEVLPNVYHHFTLWHILAKISENLGNVTKRHENFM 399
Cdd:PLN03097  319 LGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFM 398

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 400 AKFEKCIYRSWTTEEFEKRWWKLVDRFELREDELVQSLCEDQRQWAPTYMKDVFLAGMSVAQRSESVNSFLDKYLHKKTT 479
Cdd:PLN03097  399 AKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTT 478

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 480 VQEFVKQYESILQDRYEEEAKADSDTWNKQPTLRSPSPFEKSISGMYTHAVFKKFQVEVLGAVACFPRKEKEDEKSITYH 559
Cdd:PLN03097  479 VQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFR 558

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 560 VQDFEKNLVFIVVWNGLKSEVSCLCRLYEYKGYLCRHAMVVLQKCELSTIPTQYILKRWTRDAKSRHLLGEEPELVQSRV 639
Cdd:PLN03097  559 VQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQVQSRV 638

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 640 QRYNDLCQRALRLIEEGSLSQESYSVAAHALDETLGNCIGVNNSNRTFLEAGPSAAHSLLCIEEDSQIRNIGKTNKKKNP 719
Cdd:PLN03097  639 QRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGTSPTHGLLCIEDDNQSRSMTKTNKKKNP 718

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 720 TKKRKVNSEPDVMTVGAHDNLQHMDKLSSRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSH 799
Cdd:PLN03097  719 TKKRKVNSEQEVTTVAAQDSLQQMDKLSSRAVALESYYGTQQSVQGMVQLNLMAPTRDNYYGNQQTIQGLGQLNSIAPSH 798

                         810       820       830       840
                  ....*....|....*....|....*....|....*....|....*...
gi 1279841619 800 DGYYPAQPSIHGLGQMDFFRAPAGFAYGIRDDPNVRTTQLHDDASRHA 847
Cdd:PLN03097  799 DGYYGTQQSIHGLGQMDFFRTPAGFSYDIRDDPNVRTAQLHDDASRHA 846
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 89-191 8.16e-33

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 121.67  E-value: 8.16e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619  89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGMKREYDKSFNRPRvrqtkqesenstgRRACAKTDCKASMHV 168
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGEARR-------------PRPSTRTGCKAMIVV 67

                          90       100
                  ....*....|....*....|...
gi 1279841619 169 KRRADGKWVIHSFVKEHNHELLP 191
Cdd:pfam03101  68 KRESDGKWVVTQFVKEHNHELLP 90
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
581-607 2.34e-06

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 44.47  E-value: 2.34e-06
                           10        20
                   ....*....|....*....|....*..
gi 1279841619  581 SCLCRLYEYKGYLCRHAMVVLQKCELS 607
Cdd:smart00575   2 TCSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-847 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 1619.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619   1 MDIDLRLPSGEHDK-DEEPNGINNMLDvEEKLHNGVIESGNnMVDATDGMHVEDGGDLNSPMLDMVMFKEDTNLEPLPGM 79
Cdd:PLN03097    1 MDIDLRLPSGDHDKeDEEPNGVDNMLS-EVKLHNGDMEIGN-VVDVAEEVLSIDGGDMNSPTGELVEFKEDTNLEPLSGM 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619  80 EFESHSEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGMKREYDKSFNRPRVRQTKQESENSTGRRACAK 159
Cdd:PLN03097   79 EFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENGTGRRSCAK 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 160 TDCKASMHVKRRADGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKNPFDKVRNFAFDAGD 239
Cdd:PLN03097  159 TDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDKGRNLGLEAGD 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 240 ARILLDFLTQMQNLNSNFFYAVDIGEDHRLRNLFWIDAKSRHDYIYFNDVVSLDTTYIRNKYKLPLAFFVGVNQHYQFML 319
Cdd:PLN03097  239 TKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFML 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 320 LGCALLSDESPTTYAWLLHVWLKAIGGQAPKVIITDHDKVLKSVIQEVLPNVYHHFTLWHILAKISENLGNVTKRHENFM 399
Cdd:PLN03097  319 LGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFM 398

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 400 AKFEKCIYRSWTTEEFEKRWWKLVDRFELREDELVQSLCEDQRQWAPTYMKDVFLAGMSVAQRSESVNSFLDKYLHKKTT 479
Cdd:PLN03097  399 AKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTT 478

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 480 VQEFVKQYESILQDRYEEEAKADSDTWNKQPTLRSPSPFEKSISGMYTHAVFKKFQVEVLGAVACFPRKEKEDEKSITYH 559
Cdd:PLN03097  479 VQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFR 558

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 560 VQDFEKNLVFIVVWNGLKSEVSCLCRLYEYKGYLCRHAMVVLQKCELSTIPTQYILKRWTRDAKSRHLLGEEPELVQSRV 639
Cdd:PLN03097  559 VQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQVQSRV 638

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 640 QRYNDLCQRALRLIEEGSLSQESYSVAAHALDETLGNCIGVNNSNRTFLEAGPSAAHSLLCIEEDSQIRNIGKTNKKKNP 719
Cdd:PLN03097  639 QRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGTSPTHGLLCIEDDNQSRSMTKTNKKKNP 718

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 720 TKKRKVNSEPDVMTVGAHDNLQHMDKLSSRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSH 799
Cdd:PLN03097  719 TKKRKVNSEQEVTTVAAQDSLQQMDKLSSRAVALESYYGTQQSVQGMVQLNLMAPTRDNYYGNQQTIQGLGQLNSIAPSH 798

                         810       820       830       840
                  ....*....|....*....|....*....|....*....|....*...
gi 1279841619 800 DGYYPAQPSIHGLGQMDFFRAPAGFAYGIRDDPNVRTTQLHDDASRHA 847
Cdd:PLN03097  799 DGYYGTQQSIHGLGQMDFFRTPAGFSYDIRDDPNVRTAQLHDDASRHA 846
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 89-191 8.16e-33

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 121.67  E-value: 8.16e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619  89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGMKREYDKSFNRPRvrqtkqesenstgRRACAKTDCKASMHV 168
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGEARR-------------PRPSTRTGCKAMIVV 67

                          90       100
                  ....*....|....*....|...
gi 1279841619 169 KRRADGKWVIHSFVKEHNHELLP 191
Cdd:pfam03101  68 KRESDGKWVVTQFVKEHNHELLP 90
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 289-383 2.05e-25

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 100.80  E-value: 2.05e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279841619 289 VVSLDTTYIRNKYKLPLAFFVGVNQHYQFMLLGCALLSDESPTTYAWLL---HVWLKAIGGQAPKVIITDHDKVLKSVIQ 365
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFdqlIAFRECMSGLSPQVIITDRDKALKNAIN 80

                          90
                  ....*....|....*...
gi 1279841619 366 EVLPNVYHHFTLWHILAK 383
Cdd:pfam10551  81 LVFPEAQHRLCIFHINKN 98
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
581-607 2.34e-06

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 44.47  E-value: 2.34e-06
                           10        20
                   ....*....|....*....|....*..
gi 1279841619  581 SCLCRLYEYKGYLCRHAMVVLQKCELS 607
Cdd:smart00575   2 TCSCRKFQLSGIPCRHALAAAIHIGLS 28
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 568-605 4.74e-06

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 43.95  E-value: 4.74e-06
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1279841619 568 VFIVVWNGLKSEVSCLCRLYEYKGYLCRHAMVVLQKCE 605
Cdd:pfam04434   1 YRVQLDLDGLEKASCSCPDFQLNGIPCKHALAVLLALG 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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