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Conserved domains on  [gi|1279819111|ref|XP_022963264|]
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dnaJ protein P58IPK homolog [Cucurbita moschata]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459274)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10767 super family cl35946
chaperone protein DnaJ; Provisional
 367-436 1.57e-26

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK10767:

Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 110.23  E-value: 1.57e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRkDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK10767    1 MAKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 66-346 1.10e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.16  E-value: 1.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  66 RYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLFDtg 145
Cdd:COG2956    23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE-- 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 146 dhtkslEFLDKvvlvfSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQK 225
Cdd:COG2956   101 ------KLLEL-----DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 226 GLRLDPEHGElkkAYFGLKNLLKKsksaednvsKGKLRLAVEEYKAALALDPNHLAhnahLHLGLCKVLVKLSRGKDALT 305
Cdd:COG2956   170 ALKLDPDCAR---ALLLLAELYLE---------QGDYEEAIAALERALEQDPDYLP----ALPRLAELYEKLGDPEEALE 233

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1279819111 306 SCNEALNIDGNLIEALVQrGEAKLLTEDWEGAVEDLKTAAQ 346
Cdd:COG2956   234 LLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLR 273
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 367-436 1.57e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 110.23  E-value: 1.57e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRkDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK10767    1 MAKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 372-435 2.85e-25

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 98.31  E-value: 2.85e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENrEEAEAMFRDVAAAYEVLGNDEKRSRFD 435
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGD-PEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 372-436 7.50e-25

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 105.38  E-value: 7.50e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQ 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 372-437 9.41e-23

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 94.00  E-value: 9.41e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNvENREEAEAMFRDVAAAYEVLGNDEKRSRFDRG 437
Cdd:COG0484     1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRN-PGDPEAEEKFKEINEAYEVLSDPEKRAAYDRF 65
DnaJ smart00271
DnaJ molecular chaperone homology domain;
371-430 8.48e-21

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 85.75  E-value: 8.48e-21
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  371 KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENREEAEAMFRDVAAAYEVLGNDEK 430
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 372-427 1.30e-18

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 79.51  E-value: 1.30e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENrEEAEAMFRDVAAAYEVLGN 427
Cdd:cd06257     1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 66-346 1.10e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.16  E-value: 1.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  66 RYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLFDtg 145
Cdd:COG2956    23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE-- 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 146 dhtkslEFLDKvvlvfSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQK 225
Cdd:COG2956   101 ------KLLEL-----DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 226 GLRLDPEHGElkkAYFGLKNLLKKsksaednvsKGKLRLAVEEYKAALALDPNHLAhnahLHLGLCKVLVKLSRGKDALT 305
Cdd:COG2956   170 ALKLDPDCAR---ALLLLAELYLE---------QGDYEEAIAALERALEQDPDYLP----ALPRLAELYEKLGDPEEALE 233

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1279819111 306 SCNEALNIDGNLIEALVQrGEAKLLTEDWEGAVEDLKTAAQ 346
Cdd:COG2956   234 LLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 65-370 2.94e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 72.42  E-value: 2.94e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  65 KRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLFDT 144
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 145 gdhtkslefldkvVLVFSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQ 224
Cdd:TIGR02917 253 -------------LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLN 319

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 225 KGLRLDPEHGELKKayfglknLLKKSKSAEDNVSKGKLRLaveeyKAALALDPNhlahNAHLHLGLCKVLVKLSRGKDAL 304
Cdd:TIGR02917 320 QILKYAPNSHQARR-------LLASIQLRLGRVDEAIATL-----SPALGLDPD----DPAALSLLGEAYLALGDFEKAA 383

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1279819111 305 TSCNEALNIDGNLIEALVQRGEAKLLTEDWEGAVEDLKTAAQSSPQDMNIRQSLM-------RAEKALKMSKR 370
Cdd:TIGR02917 384 EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIlsylrsgQFDKALAAAKK 456
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 51-119 2.21e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.70  E-value: 2.21e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  51 SAELF-EKVSRNVKVKRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNS 119
Cdd:PLN03088   35 NAELYaDRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104
TPR_1 pfam00515
Tetratricopeptide repeat;
85-118 4.76e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 4.76e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1279819111  85 SEAYFHRGSILRQLCRYDESKKNYKKYLELKPGN 118
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 367-436 1.57e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 110.23  E-value: 1.57e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRkDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK10767    1 MAKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 372-435 2.85e-25

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 98.31  E-value: 2.85e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENrEEAEAMFRDVAAAYEVLGNDEKRSRFD 435
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGD-PEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 372-436 7.50e-25

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 105.38  E-value: 7.50e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQ 63
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 367-436 8.92e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 102.51  E-value: 8.92e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRkDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14301    1 MSQR-DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDR 68
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 370-436 2.85e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 101.02  E-value: 2.85e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1279819111 370 RKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENREEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14282    3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDR 69
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 370-436 3.88e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 101.04  E-value: 3.88e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1279819111 370 RKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENReEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14281    2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK-EAEEHFKEVNEAYEVLSNDDKRRRYDQ 67
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 372-437 9.41e-23

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 94.00  E-value: 9.41e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNvENREEAEAMFRDVAAAYEVLGNDEKRSRFDRG 437
Cdd:COG0484     1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRN-PGDPEAEEKFKEINEAYEVLSDPEKRAAYDRF 65
PRK14289 PRK14289
molecular chaperone DnaJ;
367-436 4.56e-22

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 97.59  E-value: 4.56e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENReEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14289    1 MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK-EAEEKFKEAAEAYDVLSDPDKRSRYDQ 69
PRK14280 PRK14280
molecular chaperone DnaJ;
367-436 1.03e-21

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 96.71  E-value: 1.03e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRkDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14280    1 MAKR-DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRAQYDQ 67
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
367-437 2.95e-21

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 87.85  E-value: 2.95e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1279819111 367 MSKRKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENREEAEAMFRDVAAAYEVLGNDEKRSRFDRG 437
Cdd:COG2214     1 MPDLKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELKALAEELFQRLNEAYEVLSDPERRAEYDRE 71
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 367-436 5.99e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 94.15  E-value: 5.99e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14298    1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDR 68
DnaJ smart00271
DnaJ molecular chaperone homology domain;
371-430 8.48e-21

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 85.75  E-value: 8.48e-21
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  371 KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENREEAEAMFRDVAAAYEVLGNDEK 430
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 372-433 9.33e-20

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 82.74  E-value: 9.33e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNvENREEAEAMFRDVAAAYEVLGNDEKRSR 433
Cdd:COG5407     1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRN-KGDPKAEERFKEINEAYELLSDAEKRAR 61
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 367-436 1.20e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 90.65  E-value: 1.20e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDknVENREEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14283    1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPD--VSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ 68
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 370-436 1.45e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 90.05  E-value: 1.45e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1279819111 370 RKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNvENREEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14285    2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKN-KGNKEAESIFKEATEAYEVLIDDNKRAQYDR 67
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 367-436 2.03e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 89.86  E-value: 2.03e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENReEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14277    1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILSDPQKRAQYDQ 69
PRK14295 PRK14295
molecular chaperone DnaJ;
366-435 4.72e-19

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 88.75  E-value: 4.72e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 366 KMSKRKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENrEEAEAMFRDVAAAYEVLGNDEKRSRFD 435
Cdd:PRK14295    4 KDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKRKEYD 72
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 372-439 8.55e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 87.98  E-value: 8.55e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNvENREEAEAMFRDVAAAYEVLGNDEKRSRFDR-GED 439
Cdd:PRK14284    2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKN-PGDAEAEKRFKEVSEAYEVLSDAQKRESYDRyGKD 69
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 368-436 1.07e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 87.51  E-value: 1.07e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1279819111 368 SKRKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENReEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14294    1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK-EAEELFKEAAEAYEVLSDPKKRGIYDQ 68
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 372-427 1.30e-18

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 79.51  E-value: 1.30e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENrEEAEAMFRDVAAAYEVLGN 427
Cdd:cd06257     1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 371-439 2.54e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 86.64  E-value: 2.54e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1279819111 371 KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFDRGED 439
Cdd:PRK14278    3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 371-436 3.38e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 86.14  E-value: 3.38e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279819111 371 KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENREEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14290    3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68
PRK14297 PRK14297
molecular chaperone DnaJ;
367-436 3.64e-18

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 85.99  E-value: 3.64e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKrKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENReEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14297    1 MAS-KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQKKAQYDQ 68
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 371-435 1.40e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 84.37  E-value: 1.40e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1279819111 371 KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFD 435
Cdd:PRK14276    4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYD 66
PRK14279 PRK14279
molecular chaperone DnaJ;
367-435 1.84e-17

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 84.01  E-value: 1.84e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1279819111 367 MSKR----KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENReEAEAMFRDVAAAYEVLGNDEKRSRFD 435
Cdd:PRK14279    1 MAQRewveKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDP-AAEERFKAVSEAHDVLSDPAKRKEYD 72
PRK14293 PRK14293
molecular chaperone DnaJ;
372-438 2.03e-17

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 83.89  E-value: 2.03e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFDR-GE 438
Cdd:PRK14293    4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQfGE 69
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 372-436 6.77e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 82.24  E-value: 6.77e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14292    3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDR 65
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 66-346 1.10e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.16  E-value: 1.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  66 RYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLFDtg 145
Cdd:COG2956    23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE-- 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 146 dhtkslEFLDKvvlvfSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQK 225
Cdd:COG2956   101 ------KLLEL-----DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 226 GLRLDPEHGElkkAYFGLKNLLKKsksaednvsKGKLRLAVEEYKAALALDPNHLAhnahLHLGLCKVLVKLSRGKDALT 305
Cdd:COG2956   170 ALKLDPDCAR---ALLLLAELYLE---------QGDYEEAIAALERALEQDPDYLP----ALPRLAELYEKLGDPEEALE 233

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1279819111 306 SCNEALNIDGNLIEALVQrGEAKLLTEDWEGAVEDLKTAAQ 346
Cdd:COG2956   234 LLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLR 273
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 371-436 1.15e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 80.37  E-value: 1.15e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279819111 371 KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14299    4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDT 67
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 371-439 1.45e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 81.21  E-value: 1.45e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 371 KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNveNREEAEAMFRDVAAAYEVLGNDEKRSRFDR-GED 439
Cdd:PRK14300    3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTT--DAKDAEKKFKEINAAYDVLKDEQKRAAYDRfGHD 70
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 202-422 4.87e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 80.81  E-value: 4.87e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 202 ALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGElkkAYFGLKNLLKKSksaednvskGKLRLAVEEYKAALALDPNHLA 281
Cdd:COG3914    80 LLELAALLLQALGRYEEALALYRRALALNPDNAE---ALFNLGNLLLAL---------GRLEEALAALRRALALNPDFAE 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 282 hnAHLHLGLCkvLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLTEDWEGAVEDLKTAAQSSPQDMNIRQSLMRA 361
Cdd:COG3914   148 --AYLNLGEA--LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFA 223

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1279819111 362 ekalkMSKRKDWYKVLGVSK-TASVAEIKRAYKKLALQWHPDKNVE-NREEAEAMFRDVAAAY 422
Cdd:COG3914   224 -----LRQACDWEVYDRFEElLAALARGPSELSPFALLYLPDDDPAeLLALARAWAQLVAAAA 281
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 370-435 6.45e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 79.43  E-value: 6.45e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279819111 370 RKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFD 435
Cdd:PRK14291    2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYD 65
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 367-436 8.49e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 78.88  E-value: 8.49e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRkDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENReEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14286    1 MSER-SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK-ESEEKFKEATEAYEILRDPKKRQAYDQ 68
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 367-436 1.04e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 78.51  E-value: 1.04e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 367 MSKRkDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnrEEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14287    1 MSKR-DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67
PRK10266 PRK10266
curved DNA-binding protein;
371-436 5.28e-15

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 75.63  E-value: 5.28e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279819111 371 KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENreEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK10266    4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRAEYDQ 67
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 107-337 2.47e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.41  E-value: 2.47e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 107 NYKKYLELKPGNSAGETELSQLLQAQSALETALKLFDTGDHTKSLEFLDKVvlvfSPACSEAKILKIKLLLATKDYSAAI 186
Cdd:COG3914    23 AAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAA----LLLLAALLELAALLLQALGRYEEAL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 187 SETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGElkkAYFGLKNLLKKsksaednvsKGKLRLAV 266
Cdd:COG3914    99 ALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRR---------LGRLEEAI 166

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1279819111 267 EEYKAALALDPNHLAhnAHLHLGLckVLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLTEDWEGA 337
Cdd:COG3914   167 AALRRALELDPDNAE--ALNNLGN--ALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 135-365 4.74e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.45  E-value: 4.74e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 135 LETALKLFDTGDHTKSLEFLDKVVLVfSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLA 214
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALEL-DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 215 DHDVALRHFQKGLRLDPEHGElkkAYFGLKNLLKKsksaednvsKGKLRLAVEEYKAALALDPNhlahNAHLHLGLCKVL 294
Cdd:COG2956    91 LLDRAEELLEKLLELDPDDAE---ALRLLAEIYEQ---------EGDWEKAIEVLERLLKLGPE----NAHAYCELAELY 154

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1279819111 295 VKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLTEDWEGAVEDLKTAAQSSPQDMNIRQSLMRAEKAL 365
Cdd:COG2956   155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
193-366 6.09e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.58  E-value: 6.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 193 LKEDESNLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGElkkAYFGLKNLLKKsksaednvsKGKLRLAVEEYKAA 272
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE---ALYNLGLAYLR---------LGRYEEALADYEQA 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 273 LALDPNHlaHNAHLHLGLckVLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLTEDWEGAVEDLKTAAQSSPQDM 352
Cdd:COG0457    69 LELDPDD--AEALNNLGL--ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144

                         170
                  ....*....|....
gi 1279819111 353 NIRQSLMRAEKALK 366
Cdd:COG0457   145 DALYNLGIALEKLG 158
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 369-436 2.05e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 71.52  E-value: 2.05e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1279819111 369 KRKDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENreEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14296    2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP--DAHDKMVEINEAADVLLDKDKRKQYDQ 67
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 65-370 2.94e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 72.42  E-value: 2.94e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  65 KRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLFDT 144
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 145 gdhtkslefldkvVLVFSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQ 224
Cdd:TIGR02917 253 -------------LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLN 319

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 225 KGLRLDPEHGELKKayfglknLLKKSKSAEDNVSKGKLRLaveeyKAALALDPNhlahNAHLHLGLCKVLVKLSRGKDAL 304
Cdd:TIGR02917 320 QILKYAPNSHQARR-------LLASIQLRLGRVDEAIATL-----SPALGLDPD----DPAALSLLGEAYLALGDFEKAA 383

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1279819111 305 TSCNEALNIDGNLIEALVQRGEAKLLTEDWEGAVEDLKTAAQSSPQDMNIRQSLM-------RAEKALKMSKR 370
Cdd:TIGR02917 384 EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIlsylrsgQFDKALAAAKK 456
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 65-314 3.71e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 69.76  E-value: 3.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  65 KRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQsaletalklfdt 144
Cdd:COG2956    56 GEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQE------------ 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 145 GDHTKSLEFLDKVVLVfSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQ 224
Cdd:COG2956   124 GDWEKAIEVLERLLKL-GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 225 KGLRLDPEHGElkkAYFGLKNLLKKSKSAEDnvskgklrlAVEEYKAALALDPNHLAHNAhlhlgLCKVLVKLSRGKDAL 304
Cdd:COG2956   203 RALEQDPDYLP---ALPRLAELYEKLGDPEE---------ALELLRKALELDPSDDLLLA-----LADLLERKEGLEAAL 265

                         250
                  ....*....|
gi 1279819111 305 TSCNEALNID 314
Cdd:COG2956   266 ALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 66-236 5.70e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.18  E-value: 5.70e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  66 RYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLFDTG 145
Cdd:COG3914    93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 146 dhtkslefldkvvlvfspacseakilkiklllatkdysaaisetvyiLKEDESNLDALLLRGRAYYYLADHDVALRHFQK 225
Cdd:COG3914   173 -----------------------------------------------LELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205

                         170
                  ....*....|.
gi 1279819111 226 GLRLDPEHGEL 236
Cdd:COG3914   206 ALELDPDNADA 216
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 63-236 1.05e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.22  E-value: 1.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  63 KVKRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLF 142
Cdd:COG2956    88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 143 DTgdhtkslefldkvVLVFSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRH 222
Cdd:COG2956   168 EK-------------ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234

                         170
                  ....*....|....
gi 1279819111 223 FQKGLRLDPEHGEL 236
Cdd:COG2956   235 LRKALELDPSDDLL 248
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 371-439 1.43e-12

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 69.08  E-value: 1.43e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 371 KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVEnreeaEAMFRDVAAAYEVLGNDEKRSRFDR-GED 439
Cdd:PTZ00037   28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKIYDEyGEE 92
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 88-352 1.82e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.45  E-value: 1.82e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  88 YFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLfdtgdHTKSLEFLDKVVlvfspacsE 167
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRI-----HQKLLERDPDRA--------E 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 168 AKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGElkkAYFGLknll 247
Cdd:COG2956    78 ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH---AYCEL---- 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 248 kksksAEDNVSKGKLRLAVEEYKAALALDPNhlahNAHLHLGLCKVLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEA 327
Cdd:COG2956   151 -----AELYLEQGDYDEAIEALEKALKLDPD----CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221

                         250       260
                  ....*....|....*....|....*
gi 1279819111 328 KLLTEDWEGAVEDLKTAAQSSPQDM 352
Cdd:COG2956   222 YEKLGDPEEALELLRKALELDPSDD 246
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-288 3.69e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.18  E-value: 3.69e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  65 KRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNsagetelsqllqAQSALETALKLFDT 144
Cdd:COG0457    22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------------AEALNNLGLALQAL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 145 GDHTKSLEFLDKvVLVFSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQ 224
Cdd:COG0457    90 GRYEEALEDYDK-ALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1279819111 225 KGLRLDPEHGELKKAYFGLKNLLKKSKSAEDNVSKGKLRLAVEEYKAALALDPNHLAHNAHLHL 288
Cdd:COG0457   169 KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
78-288 8.80e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 8.80e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  78 IEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQsaletalklfdtGDHTKSLEFLDKv 157
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRL------------GRYEEALADYEQ- 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 158 VLVFSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGELK 237
Cdd:COG0457    68 ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADAL 147

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1279819111 238 KAYFGLKNLLKKSKSAEDNVSKGKLRLAVEEYKAALALDPNHLAHNAHLHL 288
Cdd:COG0457   148 YNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 67-358 6.10e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.64  E-value: 6.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  67 YSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLF---D 143
Cdd:TIGR02917  38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELpgkT 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 144 TGDHTKSLEFLDKV-------------------VLVFSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALL 204
Cdd:TIGR02917 118 LLDDEGAAELLALRglaylglgqlelaqksyeqALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 205 LRGRAYYYLADHDVALRHFQKGLRLDPEHgelKKAYFGLKNLLkksksaednVSKGKLRLAVEEYKAALALDPNH-LAHN 283
Cdd:TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNN---IAVLLALATIL---------IEAGEFEEAEKHADALLKKAPNSpLAHY 265

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1279819111 284 AhlhlglcKVLVKLSRGK--DALTSCNEALNIDGNLIEALVQRGEAKLLTEDWEGAVEDLKTAAQSSPQDMNIRQSL 358
Cdd:TIGR02917 266 L-------KALVDFQKKNyeDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLL 335
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
372-425 1.99e-09

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 54.03  E-value: 1.99e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1279819111 372 DWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNV-----ENREEAEAMFRDVAAAYEVL 425
Cdd:COG1076     5 DAFELLGLPPDADDAELKRAYRKLQREHHPDRLAaglpeEEQRLALQKAAAINEAYETL 63
PRK14288 PRK14288
molecular chaperone DnaJ;
373-436 2.13e-09

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 59.32  E-value: 2.13e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1279819111 373 WYKVLGVSKTASVAEIKRAYKKLALQWHPDKNVENReEAEAMFRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PRK14288    5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK-EAEEKFKLINEAYGVLSDEKKRALYDR 67
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 200-351 2.23e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 2.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 200 LDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGElkkAYFGLKNLLkksksaednVSKGKLRLAVEEYKAALALDPNh 279
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPE---AFALLGEIL---------LQLGDLDEAIVLLHEALELDPD- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1279819111 280 lahNAHLHLGLCKVLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLTEDWEGAVEDLKTAAQSSPQD 351
Cdd:COG4783    71 ---EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 164-316 3.09e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 3.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 164 ACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGElkkAYFGL 243
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE---ARLNL 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1279819111 244 KNLLKKSksaednvskGKLRLAVEEYKAALALDPNHLahNAHLHLGlcKVLVKLSRGKDALTSCNEALNIDGN 316
Cdd:COG4783    79 GLALLKA---------GDYDEALALLEKALKLDPEHP--EAYLRLA--RAYRALGRPDEAIAALEKALELDPD 138
djlA PRK09430
co-chaperone DjlA;
371-433 2.15e-08

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 55.20  E-value: 2.15e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1279819111 371 KDWYKVLGVSKTASVAEIKRAYKKLALQWHPDKNV------ENREEAEAMFRDVAAAYEVLgndeKRSR 433
Cdd:PRK09430  200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVakglppEMMEMAKEKAQEIQAAYELI----KKQK 264
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 69-232 3.47e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.93  E-value: 3.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  69 EALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLFDTgdht 148
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER---- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 149 kslefldkvvlvfspacseakilkiklllatkdysaaisetvyILKEDESNLDALLLRGRAYYYLADHDVALRHFQKGLR 228
Cdd:COG4235    77 -------------------------------------------ALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113


                  ....
gi 1279819111 229 LDPE 232
Cdd:COG4235   114 LLPA 117
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-220 3.84e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 3.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  65 KRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLFDT 144
Cdd:COG0457    90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279819111 145 GDHTKSLEFLDKVVLVFSPACSEAKILKIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVAL 220
Cdd:COG0457   170 LEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 65-233 7.15e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 7.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  65 KRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLFDT 144
Cdd:COG4783    18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEK 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 145 gdhtkslefldkvvlvfspacseakilkiklllatkdysaaisetvyILKEDESNLDALLLRGRAYYYLADHDVALRHFQ 224
Cdd:COG4783    98 -----------------------------------------------ALKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130


                  ....*....
gi 1279819111 225 KGLRLDPEH 233
Cdd:COG4783   131 KALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 193-290 1.29e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.39  E-value: 1.29e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 193 LKEDESNLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGELKKAYfglknllkksksAEDNVSKGKLRLAVEEYKAA 272
Cdd:COG4235    10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL------------AEALLAAGDTEEAEELLERA 77

                          90
                  ....*....|....*...
gi 1279819111 273 LALDPNHLahNAHLHLGL 290
Cdd:COG4235    78 LALDPDNP--EALYLLGL 93
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 68-371 3.21e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.16  E-value: 3.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  68 SEALDDLNAAIEADPKLSEA----------------------------------YFHRGSILRQLCRYDESKKNYKKYLE 113
Cdd:TIGR02917 414 SEAIADLETAAQLDPELGRAdlllilsylrsgqfdkalaaakklekkqpdnaslHNLLGAIYLGKGDLAKAREAFEKALS 493

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 114 LKPGNSAGETELSQLLQAQSALETALKLFD----------------------TGDHTKSLEFLDKVVLVfSPACSEAKIL 171
Cdd:TIGR02917 494 IEPDFFPAAANLARIDIQEGNPDDAIQRFEkvltidpknlrailalaglylrTGNEEEAVAWLEKAAEL-NPQEIEPALA 572

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 172 KIKLLLATKDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGELKKayfglknLLKKSK 251
Cdd:TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL-------LLADAY 645

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 252 SAEDNVSKgklrlAVEEYKAALALDPnhlaHNAHLHLGLCKVLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLT 331
Cdd:TIGR02917 646 AVMKNYAK-----AITSLKRALELKP----DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQ 716

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1279819111 332 EDWEGAVEDLKTAAQSSPQDmnirQSLMRAEKALKMSKRK 371
Cdd:TIGR02917 717 KDYPAAIQAYRKALKRAPSS----QNAIKLHRALLASGNT 752
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
199-353 4.22e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 50.68  E-value: 4.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 199 NLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGElkkAYFGLKNLLkksksaednVSKGKLRLAVEEYKAALALDPN 278
Cdd:COG4785    72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAE---AYNNRGLAY---------LLLGDYDAALEDFDRALELDPD 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1279819111 279 HLAhnAHLHLGLckVLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLTeDWEGAVEDLKTAAQSSPQDMN 353
Cdd:COG4785   140 YAY--AYLNRGI--ALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL-DPEKALALLLEDWATAYLLQG 209
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
180-306 1.25e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.53  E-value: 1.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 180 KDYSAAISETVYILKEDESNLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGElkkAYFGLKNLLKKsksaednvsK 259
Cdd:COG4785    87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAY---AYLNRGIALYY---------L 154

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1279819111 260 GKLRLAVEEYKAALALDPNHLahNAHLHLGLCKVLVKLSRGKDALTS 306
Cdd:COG4785   155 GRYELAIADLEKALELDPNDP--ERALWLYLAERKLDPEKALALLLE 199
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 253-366 1.94e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 1.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 253 AEDNVSKGKLRLAVEEYKAALALDPNhlahNAHLHLGLCKVLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLTE 332
Cdd:COG4783    11 AQALLLAGDYDEAEALLEKALELDPD----NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1279819111 333 DWEGAVEDLKTAAQSSPQDMNIRQSLMRAEKALK 366
Cdd:COG4783    87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
65-143 3.06e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 3.06e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1279819111  65 KRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKnYKKYLELKPGNSAGETELSQLLQAQSALETALKLFD 143
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
61-144 5.63e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.60  E-value: 5.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  61 NVKVKRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPgNSAGETELSQLLQAQSALETALK 140
Cdd:COG4785   117 YLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP-NDPERALWLYLAERKLDPEKALA 195


                  ....
gi 1279819111 141 LFDT 144
Cdd:COG4785   196 LLLE 199
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 309-436 6.08e-06

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 49.01  E-value: 6.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  309 EALNIDGNLIEALVQRGEAKLL--------TEDWEGAVEDLKTAAQSSPQDMNIRQSLMRAEKALKMSKRKdWYKVLGVS 380
Cdd:PTZ00341   504 EQETVDEHVEEPAVDENEEQQTadehveepTIAEEHVEEEISTAEEHIEEPASDVQQDSEAAPTIEIPDTL-FYDILGVG 582

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1279819111  381 KTASVAEIKRAYKKLALQWHPDKnvenREEAEAM--FRDVAAAYEVLGNDEKRSRFDR 436
Cdd:PTZ00341   583 VNADMKEISERYFKLAENYYPPK----RSGNEGFhkFKKINEAYQILGDIDKKKMYNK 636
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 65-143 9.45e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 9.45e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1279819111  65 KRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQAQSALETALKLFD 143
Cdd:COG5010    68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
79-274 1.62e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.06  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  79 EADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNsagetelsqllqAQSALETALKLFDTGDHTKSLEFLDKVv 158
Cdd:COG4785    67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL------------AEAYNNRGLAYLLLGDYDAALEDFDRA- 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 159 lvfspacseakilkiklllatkdysaaisetvyiLKEDESNLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEH----- 233
Cdd:COG4785   134 ----------------------------------LELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDperal 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1279819111 234 ----GELKKAYFGLKNLLKKSKsAEDNVSKGKLRLAVEEYKAALA 274
Cdd:COG4785   180 wlylAERKLDPEKALALLLEDW-ATAYLLQGDTEEARELFKLALA 223
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 51-119 2.21e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.70  E-value: 2.21e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  51 SAELF-EKVSRNVKVKRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNS 119
Cdd:PLN03088   35 NAELYaDRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 265-355 3.18e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 3.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 265 AVEEYKAALALDPNhlahNAHLHLGLCKVLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLTEDWEGAVEDLKTA 344
Cdd:COG4235     2 AIARLRQALAANPN----DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77

                          90
                  ....*....|.
gi 1279819111 345 AQSSPQDMNIR 355
Cdd:COG4235    78 LALDPDNPEAL 88
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
54-120 4.07e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.91  E-value: 4.07e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1279819111  54 LFEKVSRNVKVKRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSA 120
Cdd:COG4785    76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAY 142
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
258-349 1.07e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 258 SKGKLRLAVEEYKAALALDPNhlahNAHLHLGLCKVLVKLSRGKDALtSCNEALNIDGNLIEALVQRGEAKLLTEDWEGA 337
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPD----NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEA 78

                          90
                  ....*....|..
gi 1279819111 338 VEDLKTAAQSSP 349
Cdd:COG3063    79 LAYLERALELDP 90
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 119-219 3.71e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.15  E-value: 3.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  119 SAGETELSQLLQAQSALETALKLFDTGDHTKSLEFLDKvvlvfSPACSEAKILKIKLLLATKDYSAAISETVYILKEDES 198
Cdd:PRK11447   561 NSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG 635

                           90       100
                   ....*....|....*....|.
gi 1279819111  199 NLDALLlrGRAYYYLADHDVA 219
Cdd:PRK11447   636 NADARL--GLIEVDIAQGDLA 654
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
209-319 6.12e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 6.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 209 AYYYLADHDVALRHFQKGLRLDPEHGElkkAYFGLKNLLkksksaednVSKGKLRLAvEEYKAALALDPNhlahNAHLHL 288
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNAD---ALNNLGLLL---------LEQGRYDEA-IALEKALKLDPN----NAEALL 63

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1279819111 289 GLCKVLVKLSRGKDALTSCNEALNIDGNLIE 319
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELDPSALR 94
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 48-142 6.85e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 42.28  E-value: 6.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  48 LGDSAELFEKVSR--------NVKVKRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNS 119
Cdd:TIGR00990 354 LSKSIELDPRVTQsyikrasmNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433

                          90       100
                  ....*....|....*....|...
gi 1279819111 120 AGETELSQLLQAQSALETALKLF 142
Cdd:TIGR00990 434 FSHIQLGVTQYKEGSIASSMATF 456
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 62-118 7.47e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.79  E-value: 7.47e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1279819111  62 VKVKRYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGN 118
Cdd:COG4783    83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 66-131 9.54e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 9.54e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279819111  66 RYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLLQA 131
Cdd:COG4235    66 DTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 369-442 9.93e-04

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 41.56  E-value: 9.93e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1279819111 369 KRKDWYKVLGVSK---TASVAEIKRAYKKLALQWHPDKNVENRE-EAEAMFRDVAAAYEVLGNDEKRSRFDRGEDIED 442
Cdd:COG5269    41 KKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDKTAAGGNkGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDAD 118
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 196-349 1.88e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 1.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 196 DESNLDALLLRGRAYYYLADHDVALRHFQKGLRLDPEHGELKKAYFGLKNLLKKSKSAEDNVSKGKLRLAVEEYKAALAL 275
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1279819111 276 DPNhlahNAHLHLGLCKVLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLTEDWEGAVEDLKTAAQSSP 349
Cdd:COG5010    84 DPN----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 262-365 2.94e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 2.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 262 LRLAVEEYKAALALDPNHLAHNAHLHLGLCKVLVKLSRGKDALTSCNEALNIDGNLIEALVQRGEAKLLTEDWEGAVEDL 341
Cdd:COG5010    32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY 111

                          90       100
                  ....*....|....*....|....
gi 1279819111 342 KTAAQSSPQDMNIRQSLMRAEKAL 365
Cdd:COG5010   112 EKALALSPDNPNAYSNLAALLLSL 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 66-152 3.07e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 3.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  66 RYSEALDDLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSAGETELSQLL-------QAQSALETA 138
Cdd:COG4235    32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAfqqgdyaEAIAAWQKL 111

                          90
                  ....*....|....
gi 1279819111 139 LKLFDTGDHTKSLE 152
Cdd:COG4235   112 LALLPADAPARLLE 125
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 63-158 3.32e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 3.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111  63 KVKRYSEALDDLNAAIEADPK---LSEAYFHRGSILRQLCRYDESKKNYKKYLELKPGNSagetelsqlLQAQSALETAL 139
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSP---------KAPDALLKLGL 75

                          90
                  ....*....|....*....
gi 1279819111 140 KLFDTGDHTKSLEFLDKVV 158
Cdd:COG1729    76 SYLELGDYDKARATLEELI 94
PTZ00100 PTZ00100
DnaJ chaperone protein; Provisional
 366-402 3.39e-03

DnaJ chaperone protein; Provisional


Pssm-ID: 240265  Cd Length: 116  Bit Score: 37.52  E-value: 3.39e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1279819111 366 KMSKRKDwYKVLGVSKTASVAEIKRAYKKLALQWHPD 402
Cdd:PTZ00100   61 PMSKSEA-YKILNISPTASKERIREAHKQLMLRNHPD 96
TPR_1 pfam00515
Tetratricopeptide repeat;
85-118 4.76e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 4.76e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1279819111  85 SEAYFHRGSILRQLCRYDESKKNYKKYLELKPGN 118
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 244-351 8.13e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 38.61  E-value: 8.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279819111 244 KNLLKKSKSA--EDNVSkgklrLAVEEYKAALALDPNhlahNAHLHLGLCKVLVKLSRGKDALTSCNEALNIDGNLIEAL 321
Cdd:PLN03088    3 KDLEDKAKEAfvDDDFA-----LAVDLYTQAIDLDPN----NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73

                          90       100       110
                  ....*....|....*....|....*....|
gi 1279819111 322 VQRGEAKLLTEDWEGAVEDLKTAAQSSPQD 351
Cdd:PLN03088   74 LRKGTACMKLEEYQTAKAALEKGASLAPGD 103
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
65-116 9.06e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.53  E-value: 9.06e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1279819111  65 KRYSEALDdLNAAIEADPKLSEAYFHRGSILRQLCRYDESKKNYKKYLELKP 116
Cdd:COG3063    40 GRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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