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Conserved domains on  [gi|1279760778|ref|XP_022929296|]
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G patch domain-containing protein TGH [Cucurbita moschata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1604 pfam07713
Protein of unknown function (DUF1604); This family is found at the N-terminus of several ...
 39-120 2.58e-39

Protein of unknown function (DUF1604); This family is found at the N-terminus of several eukaryotic RNA processing proteins.


:

Pssm-ID: 462241  Cd Length: 84  Bit Score: 140.35  E-value: 2.58e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279760778   39 LPSWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKTEL-EGRGLGTS 117
Cdd:pfam07713    2 VPVWKQEVRDEQGRRRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRSNRAKKKQQRPEDFMDEEDLGEFgAPRQLRTT 81


                   ...
gi 1279760778  118 FQF 120
Cdd:pfam07713   82 DEF 84
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 412-459 4.14e-11

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


:

Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 58.68  E-value: 4.14e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1279760778  412 LIEGVATLVARCGKLFEDLSREKNKSNTLFSFL--TGGTGHEYYSRKLWE 459
Cdd:pfam01805    2 IIKKTAQFVARNGPEFEALLMEREERNPQFDFLfdPDDPLHAYYRWKLEE 51
 
Name Accession Description Interval E-value
DUF1604 pfam07713
Protein of unknown function (DUF1604); This family is found at the N-terminus of several ...
 39-120 2.58e-39

Protein of unknown function (DUF1604); This family is found at the N-terminus of several eukaryotic RNA processing proteins.


Pssm-ID: 462241  Cd Length: 84  Bit Score: 140.35  E-value: 2.58e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279760778   39 LPSWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKTEL-EGRGLGTS 117
Cdd:pfam07713    2 VPVWKQEVRDEQGRRRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRSNRAKKKQQRPEDFMDEEDLGEFgAPRQLRTT 81


                   ...
gi 1279760778  118 FQF 120
Cdd:pfam07713   82 DEF 84
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 412-459 4.14e-11

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 58.68  E-value: 4.14e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1279760778  412 LIEGVATLVARCGKLFEDLSREKNKSNTLFSFL--TGGTGHEYYSRKLWE 459
Cdd:pfam01805    2 IIKKTAQFVARNGPEFEALLMEREERNPQFDFLfdPDDPLHAYYRWKLEE 51
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 412-461 1.99e-08

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 51.43  E-value: 1.99e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|.
gi 1279760778   412 LIEGVATLVARCGKLFEDLSREKNKSNTLFSFLTGGT-GHEYYSRKLWEEQ 461
Cdd:smart00648    3 IIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDpYHAYYRKKLAEYR 53
 
Name Accession Description Interval E-value
DUF1604 pfam07713
Protein of unknown function (DUF1604); This family is found at the N-terminus of several ...
 39-120 2.58e-39

Protein of unknown function (DUF1604); This family is found at the N-terminus of several eukaryotic RNA processing proteins.


Pssm-ID: 462241  Cd Length: 84  Bit Score: 140.35  E-value: 2.58e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279760778   39 LPSWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKTEL-EGRGLGTS 117
Cdd:pfam07713    2 VPVWKQEVRDEQGRRRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRSNRAKKKQQRPEDFMDEEDLGEFgAPRQLRTT 81


                   ...
gi 1279760778  118 FQF 120
Cdd:pfam07713   82 DEF 84
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 412-459 4.14e-11

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 58.68  E-value: 4.14e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1279760778  412 LIEGVATLVARCGKLFEDLSREKNKSNTLFSFL--TGGTGHEYYSRKLWE 459
Cdd:pfam01805    2 IIKKTAQFVARNGPEFEALLMEREERNPQFDFLfdPDDPLHAYYRWKLEE 51
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 412-461 1.99e-08

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 51.43  E-value: 1.99e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|.
gi 1279760778   412 LIEGVATLVARCGKLFEDLSREKNKSNTLFSFLTGGT-GHEYYSRKLWEEQ 461
Cdd:smart00648    3 IIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDpYHAYYRKKLAEYR 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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