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Conserved domains on  [gi|1278701893|gb|PJC03027|]
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glycerol-3-phosphate dehydrogenase/oxidase, partial [Gallionellales bacterium CG_4_9_14_0_8_um_filter_59_50]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GlpA super family cl43191
Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate ...
 29-243 6.76e-68

Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate dehydrogenase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


The actual alignment was detected with superfamily member COG0578:

Pssm-ID: 440343 [Multi-domain]  Cd Length: 501  Bit Score: 217.30  E-value: 6.76e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  29 DAALRGLRVALVEQGDWASATSSASSKLIHGGLRYLETYDFKLVKKALRERQLLLDIAPHRVWPLRFGVPVYADSRNGLL 108
Cdd:COG0578     2 DAAGRGLSVALVEKGDFASGTSSRSSKLIHGGLRYLEQGEFRLVREALREREVLLRNAPHLVRPLPFLLPLYKGGERPAW 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 109 KLKAGLALYDALAGFPPDAmRHHRFAAQDFLGHFPFLVTSDLRGGYTYGDAQTDDARLVLELVAGALAHGAVCVNYASVV 188
Cdd:COG0578    82 LIRAGLFLYDLLAGRKGLP-RHRRLSRAEALALAPLLRPDGLRGGFEYYDAQVDDARLVLELARTAAERGAVVLNYTRVT 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 189 TWDEADGKVCGATVRDVERGATATVRARQCVSTSGQWLA-----TGTAERAWCRLSKGVH 243
Cdd:COG0578   161 GLLRDGGRVWGVTVRDRLTGEEFTVRARVVVNATGPWVDelralDGPKAPRRVRPSKGSH 220
FAD_binding_2 super family cl46878
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 13-43 1.29e-03

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


The actual alignment was detected with superfamily member pfam00890:

Pssm-ID: 481218 [Multi-domain]  Cd Length: 398  Bit Score: 39.58  E-value: 1.29e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1278701893  13 DLLVCGGGIYGAWAAYDAALRGLRVALVEQG 43
Cdd:pfam00890   1 DVLVIGGGLAGLAAALAAAEAGLKVAVVEKG 31
 
Name Accession Description Interval E-value
GlpA COG0578
Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate ...
 29-243 6.76e-68

Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate dehydrogenase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 440343 [Multi-domain]  Cd Length: 501  Bit Score: 217.30  E-value: 6.76e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  29 DAALRGLRVALVEQGDWASATSSASSKLIHGGLRYLETYDFKLVKKALRERQLLLDIAPHRVWPLRFGVPVYADSRNGLL 108
Cdd:COG0578     2 DAAGRGLSVALVEKGDFASGTSSRSSKLIHGGLRYLEQGEFRLVREALREREVLLRNAPHLVRPLPFLLPLYKGGERPAW 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 109 KLKAGLALYDALAGFPPDAmRHHRFAAQDFLGHFPFLVTSDLRGGYTYGDAQTDDARLVLELVAGALAHGAVCVNYASVV 188
Cdd:COG0578    82 LIRAGLFLYDLLAGRKGLP-RHRRLSRAEALALAPLLRPDGLRGGFEYYDAQVDDARLVLELARTAAERGAVVLNYTRVT 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 189 TWDEADGKVCGATVRDVERGATATVRARQCVSTSGQWLA-----TGTAERAWCRLSKGVH 243
Cdd:COG0578   161 GLLRDGGRVWGVTVRDRLTGEEFTVRARVVVNATGPWVDelralDGPKAPRRVRPSKGSH 220
PRK13369 PRK13369
glycerol-3-phosphate dehydrogenase; Provisional
 10-243 7.02e-40

glycerol-3-phosphate dehydrogenase; Provisional


Pssm-ID: 237365 [Multi-domain]  Cd Length: 502  Bit Score: 143.57  E-value: 7.02e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  10 NEFDLLVCGGGIYGAWAAYDAALRGLRVALVEQGDWASATSSASSKLIHGGLRYLETYDFKLVKKALRERQLLLDIAPHR 89
Cdd:PRK13369    5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPHI 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  90 VWPLRFGVPVYADSRnGLLKLKAGLALYDALAG---FPP----DAMRHHRFAAqdflghfpflVTSDLRGGYTYGDAQTD 162
Cdd:PRK13369   85 IWPMRFVLPHSPEDR-PAWLVRLGLFLYDHLGGrkrLPGtrtlDLRRDPEGAP----------LKPEYTKGFEYSDCWVD 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 163 DARLVLELVAGALAHGAVCVNYASVVTWDEaDGKVCGATVRDvERGATATVRARQCVSTSGQWL------ATGTAERAWC 236
Cdd:PRK13369  154 DARLVVLNALDAAERGATILTRTRCVSARR-EGGLWRVETRD-ADGETRTVRARALVNAAGPWVtdvihrVAGSNSSRNV 231


                  ....*..
gi 1278701893 237 RLSKGVH 243
Cdd:PRK13369  232 RLVKGSH 238
glycerol3P_ox_1 NF033461
type 1 glycerol-3-phosphate oxidase; Glycerol-3-phosphate oxidase, also called ...
 7-243 2.64e-31

type 1 glycerol-3-phosphate oxidase; Glycerol-3-phosphate oxidase, also called alpha-glycerophosphate oxidase (GlpO), is an FAD-dependent enzyme related to the glycerol-3-phosphate dehydrogenase GlpD. Notably, GlpO releases hydrogen peroxide, which can contribute to virulence.


Pssm-ID: 411122 [Multi-domain]  Cd Length: 607  Bit Score: 120.82  E-value: 2.64e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893   7 ALQNE-FDLLVCGGGIYGAWAAYDAALRGLRVALVEQGDWASATSSASSKLIHGGLRYLETYDFKLVKKALRERQLLLDI 85
Cdd:NF033461   13 KLQDEtLDLLIIGGGITGAGVALQAAASGMKTGLIEMQDFAEGTSSRSTKLVHGGIRYLKTFDVEVVADTVKERAVVQGI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  86 APHRVWPLRFGVPVY--ADSRNGLLKLKAGLALYDALAGFPPDAMRHHRFAAQDFLGHFPFLVTSDLRGGYTYGDAQTDD 163
Cdd:NF033461   93 APHIPKPDPMLLPIYdePGATFNMFSVKVAMDLYDQLAGVTGTKYANYTLTKEEVLEREPQLKKEGLQGGGVYLDFRNND 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 164 ARLVLELVAGALAHGAVCVNYASVV--TWDEaDGKVCGATVRDVERGATATVRARQCVSTSGQW------LATGTAERAW 235
Cdd:NF033461  173 ARLVIENIKRAHEDGALMASRVKAVgfLHDE-NGKINGVKAEDLLTGETFDIHAKLVINTTGPWsdkvrnLDKKEALVPQ 251


                  ....*...
gi 1278701893 236 CRLSKGVH 243
Cdd:NF033461  252 MRPTKGVH 259
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 13-225 8.29e-19

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 83.60  E-value: 8.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  13 DLLVCGGGIYGAWAAYDAALRGLRVALVEQGDWASATS-SASSKLIHGGLRYLETYDF-KLVKKALRERQLLL-DIAPHR 89
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGAsGRNAGLIHPGLRYLEPSELaRLALEALDLWEELEeELGIDC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  90 VWPLRFGVPVYADSRngllkLKAGLALYDALAGFPPDamrHHRFAAQDFLGHFPFLvtSDLRGG-YTYGDAQTDDARLVL 168
Cdd:pfam01266  81 GFRRCGVLVLARDEE-----EEALEKLLAALRRLGVP---AELLDAEELRELEPLL--PGLRGGlFYPDGGHVDPARLLR 150

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1278701893 169 ELVAGALAHGAVCVNYASVVTWDEADGKVcgatvrdverGATATVRARQCVSTSGQW 225
Cdd:pfam01266 151 ALARAAEALGVRIIEGTEVTGIEEEGGVW----------GVVTTGEADAVVNAAGAW 197
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 13-43 1.29e-03

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 39.58  E-value: 1.29e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1278701893  13 DLLVCGGGIYGAWAAYDAALRGLRVALVEQG 43
Cdd:pfam00890   1 DVLVIGGGLAGLAAALAAAEAGLKVAVVEKG 31
PRK07608 PRK07608
UbiH/UbiF family hydroxylase;
11-43 1.42e-03

UbiH/UbiF family hydroxylase;


Pssm-ID: 181057 [Multi-domain]  Cd Length: 388  Bit Score: 39.17  E-value: 1.42e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1278701893  11 EFDLLVCGGGIYGAWAAYDAALRGLRVALVEQG 43
Cdd:PRK07608    5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPR 37
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 12-44 1.56e-03

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 38.84  E-value: 1.56e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1278701893  12 FDLLVCGGGIYGAWAAYDAALRGLRVALVEQGD 44
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 11-42 9.17e-03

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 36.73  E-value: 9.17e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1278701893  11 EFDLLVCGGGIYGAWAAYDAALRGLRVALVEQ 42
Cdd:COG1053     3 EYDVVVVGSGGAGLRAALEAAEAGLKVLVLEK 34
 
Name Accession Description Interval E-value
GlpA COG0578
Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate ...
 29-243 6.76e-68

Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Glycerol-3-phosphate dehydrogenase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 440343 [Multi-domain]  Cd Length: 501  Bit Score: 217.30  E-value: 6.76e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  29 DAALRGLRVALVEQGDWASATSSASSKLIHGGLRYLETYDFKLVKKALRERQLLLDIAPHRVWPLRFGVPVYADSRNGLL 108
Cdd:COG0578     2 DAAGRGLSVALVEKGDFASGTSSRSSKLIHGGLRYLEQGEFRLVREALREREVLLRNAPHLVRPLPFLLPLYKGGERPAW 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 109 KLKAGLALYDALAGFPPDAmRHHRFAAQDFLGHFPFLVTSDLRGGYTYGDAQTDDARLVLELVAGALAHGAVCVNYASVV 188
Cdd:COG0578    82 LIRAGLFLYDLLAGRKGLP-RHRRLSRAEALALAPLLRPDGLRGGFEYYDAQVDDARLVLELARTAAERGAVVLNYTRVT 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 189 TWDEADGKVCGATVRDVERGATATVRARQCVSTSGQWLA-----TGTAERAWCRLSKGVH 243
Cdd:COG0578   161 GLLRDGGRVWGVTVRDRLTGEEFTVRARVVVNATGPWVDelralDGPKAPRRVRPSKGSH 220
PRK13369 PRK13369
glycerol-3-phosphate dehydrogenase; Provisional
 10-243 7.02e-40

glycerol-3-phosphate dehydrogenase; Provisional


Pssm-ID: 237365 [Multi-domain]  Cd Length: 502  Bit Score: 143.57  E-value: 7.02e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  10 NEFDLLVCGGGIYGAWAAYDAALRGLRVALVEQGDWASATSSASSKLIHGGLRYLETYDFKLVKKALRERQLLLDIAPHR 89
Cdd:PRK13369    5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPHI 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  90 VWPLRFGVPVYADSRnGLLKLKAGLALYDALAG---FPP----DAMRHHRFAAqdflghfpflVTSDLRGGYTYGDAQTD 162
Cdd:PRK13369   85 IWPMRFVLPHSPEDR-PAWLVRLGLFLYDHLGGrkrLPGtrtlDLRRDPEGAP----------LKPEYTKGFEYSDCWVD 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 163 DARLVLELVAGALAHGAVCVNYASVVTWDEaDGKVCGATVRDvERGATATVRARQCVSTSGQWL------ATGTAERAWC 236
Cdd:PRK13369  154 DARLVVLNALDAAERGATILTRTRCVSARR-EGGLWRVETRD-ADGETRTVRARALVNAAGPWVtdvihrVAGSNSSRNV 231


                  ....*..
gi 1278701893 237 RLSKGVH 243
Cdd:PRK13369  232 RLVKGSH 238
glpD PRK12266
glycerol-3-phosphate dehydrogenase; Reviewed
 9-243 9.73e-40

glycerol-3-phosphate dehydrogenase; Reviewed


Pssm-ID: 237027 [Multi-domain]  Cd Length: 508  Bit Score: 142.97  E-value: 9.73e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893   9 QNEFDLLVCGGGIYGAWAAYDAALRGLRVALVEQGDWASATSSASSKLIHGGLRYLETYDFKLVKKALRERQLLLDIAPH 88
Cdd:PRK12266    4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAPH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  89 RVWPLRFGVPVYADSRngllklkaglalYDALAG---FPPDA---MRHHRFAAqdflghfpfLVTSDLRGGYTYGDAQTD 162
Cdd:PRK12266   84 IIWPMRFVLPHRPHLRpawmir-aglflYDHLGKrksLPGSRgldLGRDPAGS---------PLKPEITRGFEYSDCWVD 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 163 DARLVLeLVA-GALAHGAVCVNYASVV-TWDEADGKVcgATVRDVERGATATVRARQCVSTSGQWLAT------GTAERA 234
Cdd:PRK12266  154 DARLVV-LNArDAAERGAEILTRTRVVsARRENGLWH--VTLEDTATGKRYTVRARALVNAAGPWVKQflddglGLPSPY 230


                  ....*....
gi 1278701893 235 WCRLSKGVH 243
Cdd:PRK12266  231 GIRLVKGSH 239
PLN02464 PLN02464
glycerol-3-phosphate dehydrogenase
 9-243 7.35e-38

glycerol-3-phosphate dehydrogenase


Pssm-ID: 215257 [Multi-domain]  Cd Length: 627  Bit Score: 139.53  E-value: 7.35e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893   9 QNEFDLLVCGGGIYGAWAAYDAALRGLRVALVEQGDWASATSSASSKLIHGGLRYLETYDF-------KLVKKALRERQL 81
Cdd:PLN02464   69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFqldygqlKLVFHALEERKQ 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  82 LLDIAPHRVWPLRFGVPVYadSRNGLLKLKAGLALYDALAGFPPDAMRHHRfAAQDFLGHFPFLVTS----DLRGGYTYG 157
Cdd:PLN02464  149 LIENAPHLCHALPIMTPCY--DWFEVPYYWAGLKAYDLVAGPRLLHLSRYY-SAKESLELFPTLAKKgkdgSLKGTVVYY 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 158 DAQTDDARLVLELVAGALAHGAVCVNYASVVTW--DEADGKVCGATVRDVERGATATVRARQCVSTSGQW------LATG 229
Cdd:PLN02464  226 DGQMNDSRLNVALACTAALAGAAVLNYAEVVSLikDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFcdevrkMADG 305

                         250
                  ....*....|....
gi 1278701893 230 TAERAWCRlSKGVH 243
Cdd:PLN02464  306 KAKPMICP-SSGVH 318
glycerol3P_ox_1 NF033461
type 1 glycerol-3-phosphate oxidase; Glycerol-3-phosphate oxidase, also called ...
 7-243 2.64e-31

type 1 glycerol-3-phosphate oxidase; Glycerol-3-phosphate oxidase, also called alpha-glycerophosphate oxidase (GlpO), is an FAD-dependent enzyme related to the glycerol-3-phosphate dehydrogenase GlpD. Notably, GlpO releases hydrogen peroxide, which can contribute to virulence.


Pssm-ID: 411122 [Multi-domain]  Cd Length: 607  Bit Score: 120.82  E-value: 2.64e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893   7 ALQNE-FDLLVCGGGIYGAWAAYDAALRGLRVALVEQGDWASATSSASSKLIHGGLRYLETYDFKLVKKALRERQLLLDI 85
Cdd:NF033461   13 KLQDEtLDLLIIGGGITGAGVALQAAASGMKTGLIEMQDFAEGTSSRSTKLVHGGIRYLKTFDVEVVADTVKERAVVQGI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  86 APHRVWPLRFGVPVY--ADSRNGLLKLKAGLALYDALAGFPPDAMRHHRFAAQDFLGHFPFLVTSDLRGGYTYGDAQTDD 163
Cdd:NF033461   93 APHIPKPDPMLLPIYdePGATFNMFSVKVAMDLYDQLAGVTGTKYANYTLTKEEVLEREPQLKKEGLQGGGVYLDFRNND 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893 164 ARLVLELVAGALAHGAVCVNYASVV--TWDEaDGKVCGATVRDVERGATATVRARQCVSTSGQW------LATGTAERAW 235
Cdd:NF033461  173 ARLVIENIKRAHEDGALMASRVKAVgfLHDE-NGKINGVKAEDLLTGETFDIHAKLVINTTGPWsdkvrnLDKKEALVPQ 251


                  ....*...
gi 1278701893 236 CRLSKGVH 243
Cdd:NF033461  252 MRPTKGVH 259
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 13-225 8.29e-19

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 83.60  E-value: 8.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  13 DLLVCGGGIYGAWAAYDAALRGLRVALVEQGDWASATS-SASSKLIHGGLRYLETYDF-KLVKKALRERQLLL-DIAPHR 89
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGAsGRNAGLIHPGLRYLEPSELaRLALEALDLWEELEeELGIDC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  90 VWPLRFGVPVYADSRngllkLKAGLALYDALAGFPPDamrHHRFAAQDFLGHFPFLvtSDLRGG-YTYGDAQTDDARLVL 168
Cdd:pfam01266  81 GFRRCGVLVLARDEE-----EEALEKLLAALRRLGVP---AELLDAEELRELEPLL--PGLRGGlFYPDGGHVDPARLLR 150

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1278701893 169 ELVAGALAHGAVCVNYASVVTWDEADGKVcgatvrdverGATATVRARQCVSTSGQW 225
Cdd:pfam01266 151 ALARAAEALGVRIIEGTEVTGIEEEGGVW----------GVVTTGEADAVVNAAGAW 197
glpA PRK11101
anaerobic glycerol-3-phosphate dehydrogenase subunit A;
9-234 2.07e-10

anaerobic glycerol-3-phosphate dehydrogenase subunit A;


Pssm-ID: 236847 [Multi-domain]  Cd Length: 546  Bit Score: 60.03  E-value: 2.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893   9 QNEFDLLVCGGGIYGAWAAYDAALRGLRVALVEQGDWASATSSASSKLIHGGLRYLETyDFKLVKKALRERQLLLDIAPH 88
Cdd:PRK11101    4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVT-DAESARECISENQILKRIARH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  89 RVWP---LRFGVPvyADSRNGLLK--LKAGLALYDALAGFPPDAMRHHrfaaqdflghfPfLVTSDLRGGYTYGDAQTDD 163
Cdd:PRK11101   83 CVEPtdgLFITLP--EDDLAFQATfiRACEEAGIEAEAIDPQQALILE-----------P-AVNPALIGAVKVPDGTVDP 148

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1278701893 164 ARLVLELVAGALAHGAVCVNYASVVTWDEADGKVCGATVRDVERGATATVRARQCVSTSGQWlATGTAERA 234
Cdd:PRK11101  149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW-GQHIAEYA 218
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
11-227 6.93e-09

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 55.30  E-value: 6.93e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  11 EFDLLVCGGGIYGAWAAYDAALRGLRVALVEQGD----------------WASATSSASSKLIHGGLRYLETydfklvkk 74
Cdd:COG0665     2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLERGRpgsgasgrnagqlrpgLAALADRALVRLAREALDLWRE-------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278701893  75 alRERQLLLDIAPHRVwplrfGVPVYADSRNGLLKLKAGLALYDALaGFPpdamrHHRFAAQDFLGHFPFLVTSDLRGG- 153
Cdd:COG0665    74 --LAAELGIDCDFRRT-----GVLYLARTEAELAALRAEAEALRAL-GLP-----VELLDAAELREREPGLGSPDYAGGl 140

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1278701893 154 YTYGDAQTDDARLVLELVAGALAHGAVCVNYASVVTWDEADGKVCGATvrdVERGataTVRARQCVSTSGQWLA 227
Cdd:COG0665   141 YDPDDGHVDPAKLVRALARAARAAGVRIREGTPVTGLEREGGRVTGVR---TERG---TVRADAVVLAAGAWSA 208
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
 13-45 9.93e-04

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 39.90  E-value: 9.93e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1278701893  13 DLLVCGGGIYGAWAAYDAALRGLRVALVEQGDW 45
Cdd:pfam12831   1 DVVVVGGGPAGVAAAIAAARAGAKVLLVERRGF 33
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 13-43 1.29e-03

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 39.58  E-value: 1.29e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1278701893  13 DLLVCGGGIYGAWAAYDAALRGLRVALVEQG 43
Cdd:pfam00890   1 DVLVIGGGLAGLAAALAAAEAGLKVAVVEKG 31
PRK07608 PRK07608
UbiH/UbiF family hydroxylase;
11-43 1.42e-03

UbiH/UbiF family hydroxylase;


Pssm-ID: 181057 [Multi-domain]  Cd Length: 388  Bit Score: 39.17  E-value: 1.42e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1278701893  11 EFDLLVCGGGIYGAWAAYDAALRGLRVALVEQG 43
Cdd:PRK07608    5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPR 37
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 12-44 1.56e-03

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 38.84  E-value: 1.56e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1278701893  12 FDLLVCGGGIYGAWAAYDAALRGLRVALVEQGD 44
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
9-44 1.77e-03

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 38.98  E-value: 1.77e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1278701893   9 QNEFDLLVCGGGIYGAWAAYDAALRGLRVALVEQGD 44
Cdd:PRK05249    3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 10-44 3.77e-03

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 38.20  E-value: 3.77e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1278701893  10 NEFDLLVCGGGIYGawaaYDAALR----GLRVALVEQGD 44
Cdd:PRK06416    3 FEYDVIVIGAGPGG----YVAAIRaaqlGLKVAIVEKEK 37
PRK05329 PRK05329
glycerol-3-phosphate dehydrogenase subunit GlpB;
11-43 8.75e-03

glycerol-3-phosphate dehydrogenase subunit GlpB;


Pssm-ID: 235412  Cd Length: 422  Bit Score: 36.75  E-value: 8.75e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1278701893  11 EFDLLVCGGGIYGAWAAYDAALRGLRVALVEQG 43
Cdd:PRK05329    2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 11-42 9.17e-03

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 36.73  E-value: 9.17e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1278701893  11 EFDLLVCGGGIYGAWAAYDAALRGLRVALVEQ 42
Cdd:COG1053     3 EYDVVVVGSGGAGLRAALEAAEAGLKVLVLEK 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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