TetR family transcriptional regulator [Comamonadaceae bacterium CG_4_9_14_3_um_filter_60_33]
TetR/AcrR family transcriptional regulator( domain architecture ID 11442015)
TetR/AcrR family transcriptional regulator may control genes involved in one of a variety of processes including antibiotic production, osmotic stress response, efflux pump expression, and multidrug resistance
List of domain hits
Name | Accession | Description | Interval | E-value | |||
AcrR | COG1309 | DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; |
23-182 | 2.58e-27 | |||
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; : Pssm-ID: 440920 [Multi-domain] Cd Length: 156 Bit Score: 102.28 E-value: 2.58e-27
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Name | Accession | Description | Interval | E-value | |||
AcrR | COG1309 | DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; |
23-182 | 2.58e-27 | |||
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; Pssm-ID: 440920 [Multi-domain] Cd Length: 156 Bit Score: 102.28 E-value: 2.58e-27
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TetR_N | pfam00440 | Bacterial regulatory proteins, tetR family; |
33-79 | 3.78e-18 | |||
Bacterial regulatory proteins, tetR family; Pssm-ID: 425684 [Multi-domain] Cd Length: 47 Bit Score: 75.14 E-value: 3.78e-18
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PRK15008 | PRK15008 | HTH-type transcriptional regulator RutR; Provisional |
21-82 | 7.54e-14 | |||
HTH-type transcriptional regulator RutR; Provisional Pssm-ID: 184970 [Multi-domain] Cd Length: 212 Bit Score: 68.03 E-value: 7.54e-14
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ScbR_bind_reg | NF041196 | ScbR family autoregulator-binding transcription factor; |
33-170 | 1.24e-12 | |||
ScbR family autoregulator-binding transcription factor; Pssm-ID: 469100 [Multi-domain] Cd Length: 191 Bit Score: 64.15 E-value: 1.24e-12
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PDI_b_family | cd02981 | Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of ... |
32-74 | 6.16e-03 | |||
Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive b domains are implicated in substrate recognition. Pssm-ID: 239279 Cd Length: 97 Bit Score: 35.01 E-value: 6.16e-03
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Name | Accession | Description | Interval | E-value | |||
AcrR | COG1309 | DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; |
23-182 | 2.58e-27 | |||
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; Pssm-ID: 440920 [Multi-domain] Cd Length: 156 Bit Score: 102.28 E-value: 2.58e-27
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TetR_N | pfam00440 | Bacterial regulatory proteins, tetR family; |
33-79 | 3.78e-18 | |||
Bacterial regulatory proteins, tetR family; Pssm-ID: 425684 [Multi-domain] Cd Length: 47 Bit Score: 75.14 E-value: 3.78e-18
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PRK15008 | PRK15008 | HTH-type transcriptional regulator RutR; Provisional |
21-82 | 7.54e-14 | |||
HTH-type transcriptional regulator RutR; Provisional Pssm-ID: 184970 [Multi-domain] Cd Length: 212 Bit Score: 68.03 E-value: 7.54e-14
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ScbR_bind_reg | NF041196 | ScbR family autoregulator-binding transcription factor; |
33-170 | 1.24e-12 | |||
ScbR family autoregulator-binding transcription factor; Pssm-ID: 469100 [Multi-domain] Cd Length: 191 Bit Score: 64.15 E-value: 1.24e-12
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YbjK | COG3226 | DNA-binding transcriptional regulator YbjK [Transcription]; |
21-107 | 4.83e-11 | |||
DNA-binding transcriptional regulator YbjK [Transcription]; Pssm-ID: 442459 [Multi-domain] Cd Length: 191 Bit Score: 59.95 E-value: 4.83e-11
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TetR_C_11 | pfam16859 | Tetracyclin repressor-like, C-terminal domain; This family of bacterial transcriptional ... |
100-192 | 2.31e-08 | |||
Tetracyclin repressor-like, C-terminal domain; This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Pssm-ID: 435608 Cd Length: 113 Bit Score: 50.65 E-value: 2.31e-08
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PRK11552 | PRK11552 | putative DNA-binding transcriptional regulator; Provisional |
15-159 | 2.24e-06 | |||
putative DNA-binding transcriptional regulator; Provisional Pssm-ID: 236928 [Multi-domain] Cd Length: 225 Bit Score: 46.97 E-value: 2.24e-06
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PRK09975 | PRK09975 | DNA-binding transcriptional regulator EnvR; Provisional |
32-94 | 7.10e-05 | |||
DNA-binding transcriptional regulator EnvR; Provisional Pssm-ID: 182177 [Multi-domain] Cd Length: 213 Bit Score: 42.42 E-value: 7.10e-05
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PRK14996 | PRK14996 | TetR family transcriptional regulator; Provisional |
26-172 | 8.68e-05 | |||
TetR family transcriptional regulator; Provisional Pssm-ID: 184958 [Multi-domain] Cd Length: 192 Bit Score: 42.00 E-value: 8.68e-05
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PRK10668 | PRK10668 | DNA-binding transcriptional repressor AcrR; Provisional |
33-79 | 1.22e-04 | |||
DNA-binding transcriptional repressor AcrR; Provisional Pssm-ID: 182632 [Multi-domain] Cd Length: 215 Bit Score: 41.92 E-value: 1.22e-04
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TetR_C_7 | pfam14246 | AefR-like transcriptional repressor, C-terminal domain; This family comprises the C-terminal ... |
128-191 | 2.12e-04 | |||
AefR-like transcriptional repressor, C-terminal domain; This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440. Pssm-ID: 433807 Cd Length: 119 Bit Score: 39.85 E-value: 2.12e-04
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PDI_b_family | cd02981 | Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of ... |
32-74 | 6.16e-03 | |||
Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive b domains are implicated in substrate recognition. Pssm-ID: 239279 Cd Length: 97 Bit Score: 35.01 E-value: 6.16e-03
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Blast search parameters | ||||
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