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Conserved domains on  [gi|1277820701|gb|PIU33368|]
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hypothetical protein COT04_00420, partial [Candidatus Shapirobacteria bacterium CG07_land_8_20_14_0_80_39_12]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YgiQ super family cl34071
Radical SAM superfamily enzyme YgiQ, UPF0313 family [General function prediction only];
26-97 7.68e-08

Radical SAM superfamily enzyme YgiQ, UPF0313 family [General function prediction only];


The actual alignment was detected with superfamily member COG1032:

Pssm-ID: 440655 [Multi-domain]  Cd Length: 394  Bit Score: 48.02  E-value: 7.68e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1277820701  26 IYYSKAERTNLthyvGLMSIASVLDKHNCQTHILDMVIEDNPEDALRRLIggfGEKVLIIGFSVMTSQLQHA 97
Cdd:COG1032     6 VYPPKYPVPPL----GLAYLAALLEEAGYEVRIVDLNAEDRSLEDLLKPL---REDPDLVGISLYTPQYPNA 70
 
Name Accession Description Interval E-value
YgiQ COG1032
Radical SAM superfamily enzyme YgiQ, UPF0313 family [General function prediction only];
26-97 7.68e-08

Radical SAM superfamily enzyme YgiQ, UPF0313 family [General function prediction only];


Pssm-ID: 440655 [Multi-domain]  Cd Length: 394  Bit Score: 48.02  E-value: 7.68e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1277820701  26 IYYSKAERTNLthyvGLMSIASVLDKHNCQTHILDMVIEDNPEDALRRLIggfGEKVLIIGFSVMTSQLQHA 97
Cdd:COG1032     6 VYPPKYPVPPL----GLAYLAALLEEAGYEVRIVDLNAEDRSLEDLLKPL---REDPDLVGISLYTPQYPNA 70
 
Name Accession Description Interval E-value
YgiQ COG1032
Radical SAM superfamily enzyme YgiQ, UPF0313 family [General function prediction only];
26-97 7.68e-08

Radical SAM superfamily enzyme YgiQ, UPF0313 family [General function prediction only];


Pssm-ID: 440655 [Multi-domain]  Cd Length: 394  Bit Score: 48.02  E-value: 7.68e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1277820701  26 IYYSKAERTNLthyvGLMSIASVLDKHNCQTHILDMVIEDNPEDALRRLIggfGEKVLIIGFSVMTSQLQHA 97
Cdd:COG1032     6 VYPPKYPVPPL----GLAYLAALLEEAGYEVRIVDLNAEDRSLEDLLKPL---REDPDLVGISLYTPQYPNA 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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