|
Name |
Accession |
Description |
Interval |
E-value |
| recA |
PRK09354 |
recombinase A; Provisional |
4-335 |
0e+00 |
|
recombinase A; Provisional
Pssm-ID: 236476 [Multi-domain] Cd Length: 349 Bit Score: 514.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 4 KEKEENKKQGIEELLDSLRTKYGEEAIMTLGDARRVNVEAVSTGSLSLDMALGVGGLPKGRIIEVFGPESSGKTTLALST 83
Cdd:PRK09354 1 MAMDEEKQKALEAALKQIEKQFGKGSIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 84 IAQVQKRGGRAAFIDAEHALDPEYAQKIGVKIKELLISQPNSGEEALNILESLIRSKIIDVVVVDSVAALTPKAEIEGDM 163
Cdd:PRK09354 81 IAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 164 ESKFIGLQARMMSQALRKVAAIASQTGTIVIFINQLREKIGIMFGNPETTPGGRALKFYSSVRIDIRRRAQLKKGDAVIG 243
Cdd:PRK09354 161 GDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 244 SRTKAKVVKNKVAAPFKVAEFDIMYGEGISYEGDVLGLALELGIVKKSGASYSFGKEKLGVGIEKARSCLKEDKKLLKEI 323
Cdd:PRK09354 241 NRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPELADEI 320
|
330
....*....|..
gi 1277202544 324 EGQVIRAKGEQE 335
Cdd:PRK09354 321 EKKIREKLGLSA 332
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
1-332 |
0e+00 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 513.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 1 MPTKEKEENKKQGIEELLDSLRTKYGEEAIMTLGDARRVNVEAVSTGSLSLDMALGVGGLPKGRIIEVFGPESSGKTTLA 80
Cdd:COG0468 1 MAKKVASSEKEKALEAALSQIEKQFGKGSIMRLGDKARQDVEVISTGSLALDIALGVGGLPRGRIVEIYGPESSGKTTLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 81 LSTIAQVQKRGGRAAFIDAEHALDPEYAQKIGVKIKELLISQPNSGEEALNILESLIRSKIIDVVVVDSVAALTPKAEIE 160
Cdd:COG0468 81 LHAIAEAQKAGGIAAFIDAEHALDPEYAKKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDLIVVDSVAALVPKAEIE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 161 GDMESKFIGLQARMMSQALRKVAAIASQTGTIVIFINQLREKIGIMFGNPETTPGGRALKFYSSVRIDIRRRAQLKKGDA 240
Cdd:COG0468 161 GEMGDSHVGLQARLMSQALRKLTGAISKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 241 VIGSRTKAKVVKNKVAAPFKVAEFDIMYGEGISYEGDVLGLALELGIVKKSGASYSFGKEKLGVGIEKARSCLKEDKKLL 320
Cdd:COG0468 241 VIGNRTRVKVVKNKVAPPFKEAEFDIMYGEGISKEGELLDLAVELGIIEKSGAWYSYGGERLGQGRENAKQFLKENPELA 320
|
330
....*....|..
gi 1277202544 321 KEIEGQVIRAKG 332
Cdd:COG0468 321 EEIEAKIREKLG 332
|
|
| tigrfam_recA |
TIGR02012 |
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization ... |
9-327 |
2.44e-164 |
|
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 162659 [Multi-domain] Cd Length: 321 Bit Score: 460.68 E-value: 2.44e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 9 NKKQGIEELLDSLRTKYGEEAIMTLGDARRVNVEAVSTGSLSLDMALGVGGLPKGRIIEVFGPESSGKTTLALSTIAQVQ 88
Cdd:TIGR02012 1 DKQKALEAALAQIEKQFGKGSIMRLGEKTVMDVETISTGSLALDLALGVGGLPKGRIIEIYGPESSGKTTLALHAIAEAQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 89 KRGGRAAFIDAEHALDPEYAQKIGVKIKELLISQPNSGEEALNILESLIRSKIIDVVVVDSVAALTPKAEIEGDMESKFI 168
Cdd:TIGR02012 81 KAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 169 GLQARMMSQALRKVAAIASQTGTIVIFINQLREKIGIMFGNPETTPGGRALKFYSSVRIDIRRRAQLKKGDAVIGSRTKA 248
Cdd:TIGR02012 161 GLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTVKQGEEVVGNRTKV 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277202544 249 KVVKNKVAAPFKVAEFDIMYGEGISYEGDVLGLALELGIVKKSGASYSFGKEKLGVGIEKARSCLKEDKKLLKEIEGQV 327
Cdd:TIGR02012 241 KVVKNKVAPPFREAEFDILYGEGISKLGEIIDLAVELDIIKKSGSWYSYGDEKLGQGRENAKAFLKENPELAQEIEKKV 319
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
12-273 |
7.09e-145 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 409.10 E-value: 7.09e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 12 QGIEELLDSLRTKYGEEAIMTLGDARRVNVEAVSTGSLSLDMALGVGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRG 91
Cdd:pfam00154 1 KALEAALKQIEKQFGKGSIMKLGDEKKLDVETISTGSLALDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 92 GRAAFIDAEHALDPEYAQKIGVKIKELLISQPNSGEEALNILESLIRSKIIDVVVVDSVAALTPKAEIEGDMESKFIGLQ 171
Cdd:pfam00154 81 GTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADMLVRSGAIDLIVVDSVAALVPKAEIEGEMGDSHVGLQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 172 ARMMSQALRKVAAIASQTGTIVIFINQLREKIGIMFGNPETTPGGRALKFYSSVRIDIRRRAQLKKGDAVIGSRTKAKVV 251
Cdd:pfam00154 161 ARLMSQALRKLTGSISKSNTTVIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQIKQGEEVIGNKTKVKVV 240
|
250 260
....*....|....*....|..
gi 1277202544 252 KNKVAAPFKVAEFDIMYGEGIS 273
Cdd:pfam00154 241 KNKVAPPFKEAEFDIMYGEGIS 262
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
40-274 |
4.47e-141 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 398.47 E-value: 4.47e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 40 NVEAVSTGSLSLDMALGVGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFIDAEHALDPEYAQKIGVKIKELL 119
Cdd:cd00983 1 DVEVIPTGSLSLDIALGIGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKLGGTAAFIDAEHALDPEYAKKLGVDIDNLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 120 ISQPNSGEEALNILESLIRSKIIDVVVVDSVAALTPKAEIEGDMESKFIGLQARMMSQALRKVAAIASQTGTIVIFINQL 199
Cdd:cd00983 81 VSQPDTGEQALEIADTLIRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSLSKSKTTVIFINQL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277202544 200 REKIGIMFGNPETTPGGRALKFYSSVRIDIRRRAQLKKGDAVIGSRTKAKVVKNKVAAPFKVAEFDIMYGEGISY 274
Cdd:cd00983 161 REKIGVMFGNPETTTGGNALKFYASVRLDIRRIELIKEGEDVIGNRTKVKVVKNKVAPPFKQAEFDILYGEGISR 235
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
9-257 |
1.64e-91 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 289.69 E-value: 1.64e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 9 NKKQGIEELLDSLRTKYGEEAIMTLGDARRVNVEAVSTGSLSLDMALGVGGLPKGRIIEVFGPESSGKTTLALSTIAQVQ 88
Cdd:PRK09519 6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 89 KRGGRAAFIDAEHALDPEYAQKIGVKIKELLISQPNSGEEALNILESLIRSKIIDVVVVDSVAALTPKAEIEGDMESKFI 168
Cdd:PRK09519 86 AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 169 GLQARMMSQALRKVAAIASQTGTIVIFINQLREKIGIMFGNPETTPGGRALKFYSSVRIDIRRRAQLKKGDAVIGSRTKA 248
Cdd:PRK09519 166 GLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRV 245
|
....*....
gi 1277202544 249 KVVKNKVAA 257
Cdd:PRK09519 246 KVVKNKCLA 254
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
63-231 |
2.09e-36 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 129.78 E-value: 2.09e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 63 GRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFIDAEHALDPEYAQKI-----------GVKIKELLISQPNSGEEALN 131
Cdd:cd01393 1 GKITEIYGPPGSGKTQLALQLAANALLLGGGVVWIDTEGAFPPSRLVQIleaspsselelAEALSRLLYFRPPDTLAHLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 132 ILESLIRSKIIDVVVVD----SVAALTPKAEIEGDMESKFIGLQARMMSQALRKVAAIASQTGTIVIFINQLREKIGIMF 207
Cdd:cd01393 81 ALDSLPESLFPPPNTSLvvvdSVSALFRKAFPRGGDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTTKIRGGS 160
|
170 180
....*....|....*....|....*
gi 1277202544 208 G-NPETTPGGRALKFYSSVRIDIRR 231
Cdd:cd01393 161 GaSLVPPALGNTWEHSVSTRLLLYR 185
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
250-327 |
2.62e-14 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 73.97 E-value: 2.62e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1277202544 250 VVKNKVAAPFKVAEFDIMYGEGISYEGDVLGLALELGIVKKSGASYSFGKEKLGVGIEKARSCLKEDKKLLKEIEGQV 327
Cdd:PRK09519 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKI 764
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
44-237 |
9.66e-13 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 66.57 E-value: 9.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 44 VSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFIDAEhALDPEYAQKI-----GVKIKEL 118
Cdd:cd01394 1 LSTGSKSLDSLLG-GGVERGTITQIYGPPGSGKTNICLQLAVEAAKQGKKVVYIDTE-GLSPERFQQIagerfESIASNI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 119 LISQPNSGEE---ALNILESLIRSKIIDVVVVDSVAALTpKAEIEGDMESKfiglqaRMMSQALRKVAAIASQTGTIVIF 195
Cdd:cd01394 79 IVFEPYSFDEqgvAIQEAEKLLKSDKVDLVVVDSATALY-RLELGDDSEAN------RELSRQMSKLLSIARKYDIPVVI 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1277202544 196 INQlrekIGIMFGNPETTP-GGRALKFYSSVRIDI------RRRAQLKK 237
Cdd:cd01394 152 TNQ----VYSDIDDDRLKPvGGTLLEHWSKAIIRLeksppgLRRATLEK 196
|
|
| COG4544 |
COG4544 |
Uncharacterized conserved protein [Function unknown]; |
18-139 |
2.24e-11 |
|
Uncharacterized conserved protein [Function unknown];
Pssm-ID: 443609 [Multi-domain] Cd Length: 230 Bit Score: 62.64 E-value: 2.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 18 LDSLRtkygeEAIMTLGDARRVNVEAVSTGSLSLDMALGVGGLPKGRIIEVFGPE-SSGKTTLALSTIAQVQKRGGRAAF 96
Cdd:COG4544 8 LAALR-----RRIWRGEGLAAAARAVLPTGFAALDAALPGGGLPRGALHEILGPApGIGELGLLLPLLARLAQAGGPVLW 82
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1277202544 97 IDAEHALDPEYAQKIGVKIKELLISQPNSGEEALNILESLIRS 139
Cdd:COG4544 83 IAPPYDLYAPGLAAAGLDPERLLLVRARRPADALWAAEEALRS 125
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
40-138 |
1.28e-09 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 57.56 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 40 NVEAVSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFIDAEhALDPEYAQKIGVK----- 114
Cdd:PRK09361 1 MDERLPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAGEdfeel 78
|
90 100
....*....|....*....|....
gi 1277202544 115 IKELLISQPNSGEEALNILESLIR 138
Cdd:PRK09361 79 LSNIIIFEPSSFEEQSEAIRKAEK 102
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
36-242 |
4.64e-09 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 56.16 E-value: 4.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 36 ARRVNVEAVSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLA--LSTIAQVQKR----GGRAAFIDAEHALDPE--- 106
Cdd:pfam08423 11 QRRSELIQITTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLChtLCVTCQLPLEmgggEGKALYIDTEGTFRPErlv 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 107 -YAQKIGVKIKELLISqpNSGEEALNI---LESLIRSKIIDVVVVDSVAALTP-----KAEIEGDMEskfigLQARMM-- 175
Cdd:pfam08423 90 aIAERYGLDPEDVLDN--VAYARAYNSehqMQLLQQAAAMMSESRFALLIVDSatalyRTDFSGRGE-----LAERQQhl 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1277202544 176 SQALRKVAAIASQTGTIVIFINQLREKIG---IMF-GNPETTPGGRALKFYSSVRIDIRRraqlKKGDAVI 242
Cdd:pfam08423 163 AKFLRTLQRLADEFGVAVVITNQVVAQVDgaaGMFsGDPKKPIGGHIMAHASTTRLSLRK----GRGEQRI 229
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
44-231 |
7.59e-09 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 55.23 E-value: 7.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 44 VSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLA--LSTIAQVQKR----GGRAAFIDAEHALDPE----YAQKIGV 113
Cdd:cd01123 1 ITTGSKELDKLLG-GGIETGSITEMFGEFRTGKTQLChtLAVTCQLPIDrgggEGKAIYIDTEGTFRPErlraIAQRFGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 114 K----IKELLISQPNSGEEALNILESlirskiIDVVVVDSVAALTPKAEIEGDMESKFIG---LQARMM--SQALRKVAA 184
Cdd:cd01123 80 DpddvLDNVAYARAFNSDHQTQLLDQ------AAAMMVESRFKLLIVDSATALYRTDYSGrgeLSARQMhlAKFLRMLQR 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1277202544 185 IASQTGTIVIFINQLREKIG---IMFGNPETTPGGRALKFYSSVRIDIRR 231
Cdd:cd01123 154 LADEFGVAVVVTNQVVAQVDgamMFAADPKKPIGGNILAHASTTRLYLRK 203
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
51-237 |
1.77e-07 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 50.88 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 51 LDMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFIDAEhALDPEYAQKIGVKIKELLISQP------- 123
Cdd:TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE-GLSPERFKQIAEDRPERALSNFivfevfd 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 124 -NSGEEALNILESLIRSKIIDVVVVDSVAALTpKAEIEGDMESKFIGLQARMmsQALRKVAAiasQTGTIVIFINQLREK 202
Cdd:TIGR02237 79 fDEQGVAIQKTSKFIDRDSASLVVVDSFTALY-RLELSDDRISRNRELARQL--TLLLSLAR---KKNLAVVITNQVYTD 152
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1277202544 203 IgimfGNPETTP-GGRALKFYSSV-----RIDIRRRAQLKK 237
Cdd:TIGR02237 153 V----NNGTLRPlGGHLLEHWSKVilrleKFRGRRLATLEK 189
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
44-111 |
1.98e-07 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 51.20 E-value: 1.98e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1277202544 44 VSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLA--LSTIAQVQKR----GGRAAFIDAEHALDPEYAQKI 111
Cdd:cd19514 1 ISTGSTELDKLLG-GGIESMSITEVFGEFRTGKTQLShtLCVTAQLPGSmgggGGKVAYIDTEGTFRPDRIRPI 73
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
44-119 |
7.38e-07 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 49.14 E-value: 7.38e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1277202544 44 VSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFIDAEHALDP--EYAQKIGVKIKELL 119
Cdd:COG0467 2 VPTGIPGLDELLG-GGLPRGSSTLLSGPPGTGKTTLALQFLAEGLRRGEKGLYVSFEESPEQllRRAESLGLDLEEYI 78
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
44-242 |
7.74e-07 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 49.28 E-value: 7.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 44 VSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKR------GGRAAFIDAEHALDPE----YAQKIGV 113
Cdd:cd19515 1 ISTGSKELDKLLG-GGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPpeegglNGKAVYIDTENTFRPErimqMAKALGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 114 KIKELL-----ISQPNSGEEALnILEslirsKIIDVVVVDSVAALTPKAEIEGDMESKFIGLQARMMSQA-----LRKVA 183
Cdd:cd19515 80 DPDEVLdniyvARAYNSNHQML-LVE-----KAEDLIKEGNNIKLLIVDSLTSHFRAEYVGRGTLAERQQklnkhLHDLH 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1277202544 184 AIASQTGTIVIFINQLREKIGIMFGNPETTPGGRALKFYSSVRIDIRRraqlKKGDAVI 242
Cdd:cd19515 154 RLADLYNIAVLVTNQVMAKPDAFFGDPTQAIGGHILGHAATFRVYLRK----GKGGKRI 208
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
37-231 |
1.22e-06 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 49.49 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 37 RRVNVEAVSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKR------GGRAAFIDAEHALDPE---- 106
Cdd:PRK04301 77 RRKNVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPeekgglEGKAVYIDTEGTFRPErieq 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 107 YAQKIGVKIKELL-----ISQPNSGEEALNI--LESLIRSKIIDVVVVDSVAALTPKAEIEG-----DMESKFiglqARM 174
Cdd:PRK04301 156 MAEALGLDPDEVLdnihvARAYNSDHQMLLAekAEELIKEGENIKLVIVDSLTAHFRAEYVGrgnlaERQQKL----NKH 231
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1277202544 175 MSQALRkvaaIASQTGTIVIFINQLREKIGIMFGNPETTPGGRALKFYSSVRIDIRR 231
Cdd:PRK04301 232 LHDLLR----LADLYNAAVVVTNQVMARPDAFFGDPTQPIGGHILGHTATFRIYLRK 284
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
58-134 |
1.25e-06 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 48.40 E-value: 1.25e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1277202544 58 GGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRGG-RAAFIDAEHALDPEyaqkigvKIKELLISQPNSGEEALNILE 134
Cdd:cd19489 2 GGLRTGEITELVGESSSGKTQLCLTAAANVASRSGqNVLYIDTKSSFSAR-------RLAQILKSRAQDAEEIDKALQ 72
|
|
| RecA-like_superfamily |
cd01120 |
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ... |
66-220 |
1.93e-06 |
|
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410865 [Multi-domain] Cd Length: 119 Bit Score: 46.34 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 66 IEVFGPESSGKTTLALSTIAQVQKRGGRAAFIDaehALDpeyaqkigvKIKELLISQPNSGEEALNILESLIRskiidvv 145
Cdd:cd01120 1 ILITGPPGSGKTTLLLQFAEQALLSDEPVIFIS---FLD---------TILEAIEDLIEEKKLDIIIIDSLSS------- 61
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277202544 146 vvdsvaaltpkaeiegdMESKFIGLQARMMSQALRKVAAIASQTGTIVIFINQLREKIGIMFGNPETTPGGRALK 220
Cdd:cd01120 62 -----------------LARASQGDRSSELLEDLAKLLRAARNTGITVIATIHSDKFDIDRGGSSNDERLLKSLR 119
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
37-111 |
3.07e-06 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 48.07 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 37 RRVNVEAVSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLA--LSTIAQV---QKRG-GRAAFIDAEHALDPEYAQK 110
Cdd:PTZ00035 93 ARKNIIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLChtLCVTCQLpieQGGGeGKVLYIDTEGTFRPERIVQ 171
|
.
gi 1277202544 111 I 111
Cdd:PTZ00035 172 I 172
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
44-231 |
3.25e-06 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 47.70 E-value: 3.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 44 VSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKT----TLALSTIAQVQKRG--GRAAFIDAEHALDPE----YAQKIGV 113
Cdd:cd19513 1 ITTGSKELDKLLG-GGIETGSITELFGEFRTGKTqlchTLAVTCQLPIDQGGgeGKALYIDTEGTFRPErllaIAERYGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 114 KIKE------------------LLISQPNSGEE---ALNILES---LIRSkiidvvvvdsvaaltpkaEIEGDMEskfig 169
Cdd:cd19513 80 NGEDvldnvayarayntdhqmqLLIQASAMMAEsryALLIVDSataLYRT------------------DYSGRGE----- 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1277202544 170 LQARMM--SQALRKVAAIASQTGTIVIFINQLREKI--GIMFGNPETTP-GGRALKFYSSVRIDIRR 231
Cdd:cd19513 137 LSARQMhlAKFLRMLQRLADEFGVAVVITNQVVAQVdgAAMFAGDPKKPiGGNIMAHASTTRLYLRK 203
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
36-106 |
1.07e-05 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 46.64 E-value: 1.07e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1277202544 36 ARRVNVEAVSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKT----TLALSTIAQVQKRG--GRAAFIDAEHALDPE 106
Cdd:TIGR02239 70 QRRQEVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTqlchTLAVTCQLPIDQGGgeGKALYIDTEGTFRPE 145
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
37-111 |
1.27e-05 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 46.31 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 37 RRVNVEAVSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLA--LSTIAQVQKR----GGRAAFIDAEHALDPEYAQK 110
Cdd:TIGR02238 71 KRKKVLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLShtLCVTAQLPREmgggNGKVAYIDTEGTFRPDRIRA 149
|
.
gi 1277202544 111 I 111
Cdd:TIGR02238 150 I 150
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
44-97 |
1.78e-05 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 45.33 E-value: 1.78e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1277202544 44 VSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFI 97
Cdd:cd01124 1 VKTGIPGLDELLG-GGIPKGSVTLLTGGPGTGKTLFGLQFLYAGAKNGEPGLFF 53
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
35-244 |
4.10e-05 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 44.72 E-value: 4.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 35 DARRVNVEAVSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKT----TLALSTIAQVQKRG--GRAAFIDAEHALDPEYA 108
Cdd:PLN03186 96 HAQRQEIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTqlchTLCVTCQLPLDQGGgeGKAMYIDTEGTFRPQRL 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 109 QKIGVKIK----------------------ELLISQPNSGEE---ALNILES---LIRskiidvvvvdsvaaltpkAEIE 160
Cdd:PLN03186 175 IQIAERFGlngadvlenvayarayntdhqsELLLEAASMMAEtrfALMIVDSataLYR------------------TEFS 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 161 GDMEskfigLQARMMSQA--LRKVAAIASQTGTIVIFINQLREKI--GIMFGNPETTP-GGRALKFYSSVRIDIRRRAQL 235
Cdd:PLN03186 237 GRGE-----LSARQMHLGkfLRSLQRLADEFGVAVVITNQVVAQVdgSAFFAGPQLKPiGGNIMAHASTTRLALRKGRGE 311
|
....*....
gi 1277202544 236 KKGDAVIGS 244
Cdd:PLN03186 312 NRICKVISS 320
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
51-103 |
4.77e-05 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 44.20 E-value: 4.77e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1277202544 51 LDMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKR------GGRAAFIDAEHAL 103
Cdd:cd19491 1 LDELLG-GGIPVGGITEIAGESGAGKTQLCLQLALTVQLPrelgglGGGAVYICTESSF 58
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
62-231 |
6.92e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.36 E-value: 6.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 62 KGRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFIDAEHALDPEYAQKIGVKIKELLISqpNSGEEALNILESLIRSki 141
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS--GSGELRLRLALALARK-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 142 idvvvvdsvaaltPKAEI----EGDMESKFIGLQARMMSQALRKVAAIASQTGTIVIFINqlrekigimfgNPETTPGGR 217
Cdd:smart00382 77 -------------LKPDVlildEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT-----------NDEKDLGPA 132
|
170
....*....|....
gi 1277202544 218 ALKFYSSVRIDIRR 231
Cdd:smart00382 133 LLRRRFDRRIVLLL 146
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
52-133 |
1.25e-04 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 42.69 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 52 DMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQV---QKRGGRAA---FIDAEHALDPEYAQKIGV-KIKELLISQPN 124
Cdd:cd19493 1 DTALA-GGLPLGAITEITGASGSGKTQFALTLASSAampARKGGLDGgvlYIDTESKFSAERLAEIAEaRFPEAFSGFME 79
|
....*....
gi 1277202544 125 SGEEALNIL 133
Cdd:cd19493 80 ENERAEEML 88
|
|
| KaiC-like_N |
cd19488 |
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
44-97 |
3.26e-04 |
|
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410896 [Multi-domain] Cd Length: 225 Bit Score: 41.57 E-value: 3.26e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1277202544 44 VSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFI 97
Cdd:cd19488 1 ISTGIPGLDDILR-GGLPPRRLYLVEGAPGTGKTTLALQFLLEGAANGETGLYI 53
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
63-106 |
2.50e-03 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 38.87 E-value: 2.50e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1277202544 63 GRIIEVFGPESSGKTTLALSTIAQ--------VQKRGGRAA---FIDAEHALDPE 106
Cdd:cd19490 1 GDVIEITGPSGSGKTELLYHLAARcilpsswgGVPLGGLEAavvFIDTDGRFDIL 55
|
|
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
38-100 |
4.49e-03 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 38.71 E-value: 4.49e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1277202544 38 RVNVEAVSTGSLSLDMALGvGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFIDAE 100
Cdd:PRK09302 249 RSSNERISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE 310
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
63-237 |
4.91e-03 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 37.20 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 63 GRIIEVFGPESSGKTTLALSTIAQVQ------KRGGRAAFIDAE-----HALDP-EYAQKIGV--KIKELLISQPNSGee 128
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQipkcfgGLAGEAIYIDTEgsfniHYFRVhDYVELLALinSLPKFLEDHPKVK-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277202544 129 aLNILESL---IRskiidvvvvdsvaaltpkaeiegdMESKFIGLQARMMSQALRKVAAIASQTGTIVIFINQLREKIGi 205
Cdd:cd19492 79 -LIVVDSIafpFR------------------------HDFDDLAQRTRLLNGLAQLLHSLARQHNLAVVLTNQVTTKIS- 132
|
170 180 190
....*....|....*....|....*....|....*...
gi 1277202544 206 MFGNPETTP-GGRALKFYSSVRI-----DIRRRAQLKK 237
Cdd:cd19492 133 EDGQSQLVPaLGESWSHACTTRLfltwdEKQRFAHLYK 170
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
44-100 |
6.38e-03 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 37.31 E-value: 6.38e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1277202544 44 VSTGSLSLDMALGVGGLPKGRIIEVFGPESSGKTTLALSTIAQVQKRGGRAAFIDAE 100
Cdd:cd19484 1 ISTGIPRLDAMLGGGGFFRGSSILVSGATGTGKTLLAASFADAACRRGERCLYFAFE 57
|
|
| |
