|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
19-621 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 658.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 19 QSKMPMIRVGEALTRLGYIDQAQLGLALERQKTERsVPLGQLLLDMGFLTRHDLNMALARKMGYPVVDVTQFPVEAEALK 98
Cdd:COG2804 1 GALSLLLRLGDLLVEAGLISEEQLLAALAEQKKTG-KPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELEIDPEVLE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 99 KISMKTAQRLNILPLLLRNNLTVVAAVDPTQRKMLEELEFLVQGRVVATLGDALQIAETIPKVYERfglhfsaddvdvsd 178
Cdd:COG2804 80 LLPEELARRHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGS-------------- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 179 lsdavadQSSASELLESME---LSDTEEETEQQIEQSDNTLVRLINTMIIEAHARGVSDIHVEcqPRRAKIRIRFRKDGI 255
Cdd:COG2804 146 -------ESSIEELLEELAedlTSEEEDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIE--PYEKRLRVRFRIDGV 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 256 LTPYLELPHTYRAALVARLKIMADLDISERRKPQDGKINFsKFSHRhRLELRIATVPTANGlEDVVMRLL-SSSRPIAMD 334
Cdd:COG2804 217 LREVLRLPKSLAPALVSRIKIMANLDIAERRLPQDGRIKL-RLGGR-EIDLRVSTLPTVYG-EKVVLRILdKSAALLDLE 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 335 KLGLTPVNFEQLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLSTPERKIWTAEDPIEITQPELRQVQINPKIDWTFAK 414
Cdd:COG2804 294 QLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFAS 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 415 ALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMGIDPFNFADSLLAVLGQRLVRKFC 494
Cdd:COG2804 374 ALRSILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLC 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 495 TACRtcesapEPYVqelladylhsfpaslrPSAEDVLPLWIDEfGQQGELLIYSAPGCPQCLGTGMTGRVGLHELLRVTP 574
Cdd:COG2804 454 PHCK------EPYE----------------PDPEELERLGLPP-EELAPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDD 510
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1277048802 575 GIRRLIQTGARSELIQAEAFASGqFRTLRQDGILKVLSGQTSIEEVR 621
Cdd:COG2804 511 ELRELIAEGASAAELREAARKEG-MRTLREDGLEKVLQGITTLEEVL 556
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
26-625 |
1.53e-178 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 518.03 E-value: 1.53e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 26 RVGEALTRLGYIDQAQLGLALERQKTERsVPLGQLLLDMGFLTRHDLNMALARKMGYPVVDVTQFPVEAEALKKISMKTA 105
Cdd:TIGR02538 1 GLGRILVKAGLLTETQAQAALEEAQASG-QPLVQYLIQNGLLDPKQLAEFLSREFGVPLLDLNAFDPDALPVQLVSEELI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 106 QRLNILPLLLRNNLTVVAAVDPTQRKMLEELEFLVQGRVVATLGDALQIAETIPKVYERfglhfsaddVDVSDLSDAVAD 185
Cdd:TIGR02538 80 QKHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGG---------SDSLAKELGDED 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 186 QSSASELLESMELSDTEEETEQQIEQSDNTLVRLINTMIIEAHARGVSDIHVEcqPRRAKIRIRFRKDGILTPYLELPHT 265
Cdd:TIGR02538 151 IGDLEELDVDAIDDEGPDDIEQDAVDDDAPIVKFVNKILLDAIRKGASDIHFE--PYEKSYRVRFRIDGILHEVAQPPLA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 266 YRAALVARLKIMADLDISERRKPQDGKINFsKFSHRHRLELRIATVPTANGlEDVVMRLL-SSSRPIAMDKLGLTPVNFE 344
Cdd:TIGR02538 229 LANRIAARIKVMSRLDIAEKRIPQDGRIKL-KLSKSKAIDFRVSTLPTLFG-EKVVLRILdSSAAQLDIDKLGFEPDQKA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 345 QLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLSTPERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRADP 424
Cdd:TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDP 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 425 DIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMGIDPFNFADSLLAVLGQRLVRKFCTACRTCEsap 504
Cdd:TIGR02538 387 DIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPE--- 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 505 EPYVQELLADYLHsfpaslrpsAEDVlplwidefgqqGELLIYSAPGCPQCLGTGMTGRVGLHELLRVTPGIRRLIQTGA 584
Cdd:TIGR02538 464 EVPAEALLELGFT---------QEDL-----------ADLKLYGPVGCDECSNTGYKGRVGIYEVMPMSEEIAELILKGG 523
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1277048802 585 RSELIQAEAFASGqFRTLRQDGILKVLSGQTSIEEVRANSN 625
Cdd:TIGR02538 524 NALQIAELAQKEG-MRTLRRSGLLKVKQGVTSLEEVLRVTV 563
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
212-620 |
2.20e-118 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 360.01 E-value: 2.20e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 212 SDNTLVRLINTMIIEAHARGVSDIHVEcqPRRAKIRIRFRKDGILTPYLELPHTYRAALVARLKIMADLDISERRKPQDG 291
Cdd:PRK10436 80 KDTPVAQLINQTLQSALQKRASDIHFE--PAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQDG 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 292 KinFSKFSHRHRLELRIATVPTANGlEDVVMRLLSS-SRPIAMDKLGLTPVNFEQLRDAVNRPYGMVLCVGPTGSGKTTT 370
Cdd:PRK10436 158 Q--FTVELAGNAYSFRIATLPCRGG-EKVVLRLLQQvQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 371 LHSVLGFLSTPERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHM 450
Cdd:PRK10436 235 LYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHL 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 451 VLSTLHTNSAPETVTRLVDMGIDPFNFADSLLAVLGQRLVRKFCTACRTCESAPEpyvqelladylhSFPASLRPSAedv 530
Cdd:PRK10436 315 VLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQASEPI------------HLPPNIWPGP--- 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 531 LPLWIdefgqqgelliysAPGCPQCLgTGMTGRVGLHELLRVTPGIRRLIQTGARSELIQAEAFASGQfRTLRQDGILKV 610
Cdd:PRK10436 380 LPHWQ-------------AVGCEHCY-HGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGM-TTLFENGLLAV 444
|
410
....*....|
gi 1277048802 611 LSGQTSIEEV 620
Cdd:PRK10436 445 EQGLTTLEEL 454
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
221-492 |
3.33e-98 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 301.13 E-value: 3.33e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 221 NTMIIEAHARGVSDIHVEcqPRRAKIRIRFRKDGILTPYLELPHTYRAALVARLKIMADLDISERRKPQDGKINFSKFSH 300
Cdd:pfam00437 1 NLIPLEALDEGASDIHVE--PPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 301 RHRLelRIATVPTANGlEDVVMRLL-SSSRPIAMDKLGLTPVNFEQLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLS 379
Cdd:pfam00437 79 GVRV--RVSTLPTAGG-EKLVIRLLdPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELN 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 380 TPERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNS 459
Cdd:pfam00437 156 TRDENIVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNS 235
|
250 260 270
....*....|....*....|....*....|...
gi 1277048802 460 APETVTRLVDMGIDPFNFADSLLAVLGQRLVRK 492
Cdd:pfam00437 236 AAGALTRLQDMGVPPFELASSLLLVIAQRLVRK 268
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
221-490 |
2.47e-86 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 270.09 E-value: 2.47e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 221 NTMIIEAHARGVSDIHVEcqPRRAKIRIRFRKDGILTPYLELPHTYRAALVARLKIMADLDISERRKPQDGKINFsKFSH 300
Cdd:NF041000 1 EELIEEAIELRASDIHFL--PREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTY-ELNE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 301 rHRLELRIATVPTANGLEDVVMRLLsssRPIAMDKLGL-TPVNFEQLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLS 379
Cdd:NF041000 78 -QQISLRLSTVGDFLGRESLVIRLL---YQLEQIKPQLfFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 380 TpERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNS 459
Cdd:NF041000 154 L-NKQVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKS 232
|
250 260 270
....*....|....*....|....*....|.
gi 1277048802 460 APETVTRLVDMGIDPFNFADSLLAVLGQRLV 490
Cdd:NF041000 233 AAGVIYRLLELGISKEELEQTLIGISYQRLI 263
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
344-492 |
1.51e-80 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 251.25 E-value: 1.51e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 344 EQLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLSTPERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRAD 423
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277048802 424 PDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMGIDPFNFADSLLAVLGQRLVRK 492
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
19-621 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 658.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 19 QSKMPMIRVGEALTRLGYIDQAQLGLALERQKTERsVPLGQLLLDMGFLTRHDLNMALARKMGYPVVDVTQFPVEAEALK 98
Cdd:COG2804 1 GALSLLLRLGDLLVEAGLISEEQLLAALAEQKKTG-KPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELEIDPEVLE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 99 KISMKTAQRLNILPLLLRNNLTVVAAVDPTQRKMLEELEFLVQGRVVATLGDALQIAETIPKVYERfglhfsaddvdvsd 178
Cdd:COG2804 80 LLPEELARRHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGS-------------- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 179 lsdavadQSSASELLESME---LSDTEEETEQQIEQSDNTLVRLINTMIIEAHARGVSDIHVEcqPRRAKIRIRFRKDGI 255
Cdd:COG2804 146 -------ESSIEELLEELAedlTSEEEDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIE--PYEKRLRVRFRIDGV 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 256 LTPYLELPHTYRAALVARLKIMADLDISERRKPQDGKINFsKFSHRhRLELRIATVPTANGlEDVVMRLL-SSSRPIAMD 334
Cdd:COG2804 217 LREVLRLPKSLAPALVSRIKIMANLDIAERRLPQDGRIKL-RLGGR-EIDLRVSTLPTVYG-EKVVLRILdKSAALLDLE 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 335 KLGLTPVNFEQLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLSTPERKIWTAEDPIEITQPELRQVQINPKIDWTFAK 414
Cdd:COG2804 294 QLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFAS 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 415 ALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMGIDPFNFADSLLAVLGQRLVRKFC 494
Cdd:COG2804 374 ALRSILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLC 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 495 TACRtcesapEPYVqelladylhsfpaslrPSAEDVLPLWIDEfGQQGELLIYSAPGCPQCLGTGMTGRVGLHELLRVTP 574
Cdd:COG2804 454 PHCK------EPYE----------------PDPEELERLGLPP-EELAPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDD 510
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1277048802 575 GIRRLIQTGARSELIQAEAFASGqFRTLRQDGILKVLSGQTSIEEVR 621
Cdd:COG2804 511 ELRELIAEGASAAELREAARKEG-MRTLREDGLEKVLQGITTLEEVL 556
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
26-625 |
1.53e-178 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 518.03 E-value: 1.53e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 26 RVGEALTRLGYIDQAQLGLALERQKTERsVPLGQLLLDMGFLTRHDLNMALARKMGYPVVDVTQFPVEAEALKKISMKTA 105
Cdd:TIGR02538 1 GLGRILVKAGLLTETQAQAALEEAQASG-QPLVQYLIQNGLLDPKQLAEFLSREFGVPLLDLNAFDPDALPVQLVSEELI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 106 QRLNILPLLLRNNLTVVAAVDPTQRKMLEELEFLVQGRVVATLGDALQIAETIPKVYERfglhfsaddVDVSDLSDAVAD 185
Cdd:TIGR02538 80 QKHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGG---------SDSLAKELGDED 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 186 QSSASELLESMELSDTEEETEQQIEQSDNTLVRLINTMIIEAHARGVSDIHVEcqPRRAKIRIRFRKDGILTPYLELPHT 265
Cdd:TIGR02538 151 IGDLEELDVDAIDDEGPDDIEQDAVDDDAPIVKFVNKILLDAIRKGASDIHFE--PYEKSYRVRFRIDGILHEVAQPPLA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 266 YRAALVARLKIMADLDISERRKPQDGKINFsKFSHRHRLELRIATVPTANGlEDVVMRLL-SSSRPIAMDKLGLTPVNFE 344
Cdd:TIGR02538 229 LANRIAARIKVMSRLDIAEKRIPQDGRIKL-KLSKSKAIDFRVSTLPTLFG-EKVVLRILdSSAAQLDIDKLGFEPDQKA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 345 QLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLSTPERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRADP 424
Cdd:TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDP 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 425 DIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMGIDPFNFADSLLAVLGQRLVRKFCTACRTCEsap 504
Cdd:TIGR02538 387 DIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPE--- 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 505 EPYVQELLADYLHsfpaslrpsAEDVlplwidefgqqGELLIYSAPGCPQCLGTGMTGRVGLHELLRVTPGIRRLIQTGA 584
Cdd:TIGR02538 464 EVPAEALLELGFT---------QEDL-----------ADLKLYGPVGCDECSNTGYKGRVGIYEVMPMSEEIAELILKGG 523
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1277048802 585 RSELIQAEAFASGqFRTLRQDGILKVLSGQTSIEEVRANSN 625
Cdd:TIGR02538 524 NALQIAELAQKEG-MRTLRRSGLLKVKQGVTSLEEVLRVTV 563
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
97-620 |
7.41e-146 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 431.42 E-value: 7.41e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 97 LKKISMKTAQRLNILPLLLRNNLTVVAAVDPTQRKMLEELEFLVQGRVVATLGDALQIAETIPKVYERFGlhfsaddvdv 176
Cdd:TIGR02533 1 VRRLPIGFAKQSRVLPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTG---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 177 sdlsdavadqSSASELLESMELSDTEEETEQQIEQSDNTL--------VRLINTMIIEAHARGVSDIHVEcqPRRAKIRI 248
Cdd:TIGR02533 71 ----------SAAAQIVEEIEGEDDLSALELDEPKIEDLLdleddapvIRLVNSLLSRAVKERASDIHIE--PFEKALVV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 249 RFRKDGILTPYLELPHTYRAALVARLKIMADLDISERRKPQDGKINFsKFSHRHrLELRIATVPTANGlEDVVMRLLS-S 327
Cdd:TIGR02533 139 RFRVDGVLRDVLSPPKKLHAALVSRVKIMAKLNIAEKRLPQDGRISL-RVGGRD-IDIRVSTVPTSHG-ERVVMRLLDkT 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 328 SRPIAMDKLGLTPVNFEQLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLSTPERKIWTAEDPIEITQPELRQVQINPK 407
Cdd:TIGR02533 216 AVRLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPK 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 408 IDWTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMGIDPFNFADSLLAVLGQ 487
Cdd:TIGR02533 296 IGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQ 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 488 RLVRKFCTACRTcesaPEPYVQELLADYLHSFPaslrpsaedvlplwidefgqqGELLIYSAPGCPQCLGTGMTGRVGLH 567
Cdd:TIGR02533 376 RLVRRLCPHCKE----PYEATPEEIALFGISPE---------------------GPINLYRPVGCPHCNHTGYLGRTGIY 430
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1277048802 568 ELLRVTPGIRRLIQTGARSELIQAEAFASGqFRTLRQDGILKVLSGQTSIEEV 620
Cdd:TIGR02533 431 ELLIVDDDLRSLIHSRADEGEIKEIARAAG-MRTLRDDGLRKVLAGITTIEEV 482
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
212-620 |
2.20e-118 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 360.01 E-value: 2.20e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 212 SDNTLVRLINTMIIEAHARGVSDIHVEcqPRRAKIRIRFRKDGILTPYLELPHTYRAALVARLKIMADLDISERRKPQDG 291
Cdd:PRK10436 80 KDTPVAQLINQTLQSALQKRASDIHFE--PAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQDG 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 292 KinFSKFSHRHRLELRIATVPTANGlEDVVMRLLSS-SRPIAMDKLGLTPVNFEQLRDAVNRPYGMVLCVGPTGSGKTTT 370
Cdd:PRK10436 158 Q--FTVELAGNAYSFRIATLPCRGG-EKVVLRLLQQvQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 371 LHSVLGFLSTPERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHM 450
Cdd:PRK10436 235 LYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHL 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 451 VLSTLHTNSAPETVTRLVDMGIDPFNFADSLLAVLGQRLVRKFCTACRTCESAPEpyvqelladylhSFPASLRPSAedv 530
Cdd:PRK10436 315 VLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQASEPI------------HLPPNIWPGP--- 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 531 LPLWIdefgqqgelliysAPGCPQCLgTGMTGRVGLHELLRVTPGIRRLIQTGARSELIQAEAFASGQfRTLRQDGILKV 610
Cdd:PRK10436 380 LPHWQ-------------AVGCEHCY-HGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGM-TTLFENGLLAV 444
|
410
....*....|
gi 1277048802 611 LSGQTSIEEV 620
Cdd:PRK10436 445 EQGLTTLEEL 454
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
221-492 |
3.33e-98 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 301.13 E-value: 3.33e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 221 NTMIIEAHARGVSDIHVEcqPRRAKIRIRFRKDGILTPYLELPHTYRAALVARLKIMADLDISERRKPQDGKINFSKFSH 300
Cdd:pfam00437 1 NLIPLEALDEGASDIHVE--PPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 301 RHRLelRIATVPTANGlEDVVMRLL-SSSRPIAMDKLGLTPVNFEQLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLS 379
Cdd:pfam00437 79 GVRV--RVSTLPTAGG-EKLVIRLLdPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELN 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 380 TPERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNS 459
Cdd:pfam00437 156 TRDENIVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNS 235
|
250 260 270
....*....|....*....|....*....|...
gi 1277048802 460 APETVTRLVDMGIDPFNFADSLLAVLGQRLVRK 492
Cdd:pfam00437 236 AAGALTRLQDMGVPPFELASSLLLVIAQRLVRK 268
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
221-490 |
2.47e-86 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 270.09 E-value: 2.47e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 221 NTMIIEAHARGVSDIHVEcqPRRAKIRIRFRKDGILTPYLELPHTYRAALVARLKIMADLDISERRKPQDGKINFsKFSH 300
Cdd:NF041000 1 EELIEEAIELRASDIHFL--PREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTY-ELNE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 301 rHRLELRIATVPTANGLEDVVMRLLsssRPIAMDKLGL-TPVNFEQLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLS 379
Cdd:NF041000 78 -QQISLRLSTVGDFLGRESLVIRLL---YQLEQIKPQLfFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 380 TpERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNS 459
Cdd:NF041000 154 L-NKQVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKS 232
|
250 260 270
....*....|....*....|....*....|.
gi 1277048802 460 APETVTRLVDMGIDPFNFADSLLAVLGQRLV 490
Cdd:NF041000 233 AAGVIYRLLELGISKEELEQTLIGISYQRLI 263
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
344-492 |
1.51e-80 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 251.25 E-value: 1.51e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 344 EQLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFLSTPERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRAD 423
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277048802 424 PDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMGIDPFNFADSLLAVLGQRLVRK 492
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
220-625 |
8.97e-58 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 197.62 E-value: 8.97e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 220 INTMIIEAHARGVSDIHVecqprRAKIRIRFRKDGILTPyLELPHTYRAALVARLKIMadldISERRKPQ---DGKINFS 296
Cdd:COG2805 5 LDELLKLAVEQGASDLHL-----TVGSPPMLRIDGELVP-LDDPPLTPEDLEALLKEI----LTEEQRERleeEGELDFS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 297 kFSHRHRLELRIATVPTANGLEdVVMRLLSSsRPIAMDKLGLTPVnfeqLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLG 376
Cdd:COG2805 75 -YSLPGLGRFRVNIFRQRGGVA-AVLRLIPS-EIPTLEELGLPPV----LKELAELPRGLVLVTGPTGSGKSTTLAAMID 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 377 FL-STPERKIWTAEDPIE---------ITQpelRQVQINPKidwTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASL 446
Cdd:COG2805 148 YInETRAKHIITIEDPIEfvhkhkkslINQ---REVGRDTP---SFANALRAALREDPDVILVGEMRDLETIEAALTAAE 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 447 TGHMVLSTLHTNSAPETVTRLVDMgidpFN----------FADSLLAVLGQRLVRKfctacrtcesapepyvqelladyl 516
Cdd:COG2805 222 TGHLVFATLHTNSAAQTIDRIIDV----FPpeeqaqirsqLAESLRGVISQRLLPR------------------------ 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 517 hsfpaslrpsaedvlplwidefgqqgelliysapgcpqclgTGMTGRVGLHELLRVTPGIRRLIQTGARSEL---IQAEA 593
Cdd:COG2805 274 -----------------------------------------ADGGGRVAAREILVNTPAVRNLIREGKTHQIpslIQTGK 312
|
410 420 430
....*....|....*....|....*....|..
gi 1277048802 594 FASGQfrTLRQDGILKVLSGQTSIEEVRANSN 625
Cdd:COG2805 313 KLGMQ--TMDQSLAELVKEGLITEETALAYAS 342
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
330-492 |
2.10e-46 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 163.09 E-value: 2.10e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 330 PIAMDKLGLTPVnfeqLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFL-STPERKIWTAEDPIE---------ITQpel 399
Cdd:cd01131 1 IPTFEELGLPPV----LKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYInETRSKHIITIEDPIEfvhkhkkslINQ--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 400 RQVQINPKidwTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMgidpF---- 475
Cdd:cd01131 74 REVGRDTE---SFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDV----Fppeq 146
|
170 180
....*....|....*....|...
gi 1277048802 476 ------NFADSLLAVLGQRLVRK 492
Cdd:cd01131 147 qeqvriQLASSLRGVISQRLLPK 169
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
220-492 |
2.69e-46 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 166.73 E-value: 2.69e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 220 INTMIIEAHARGVSDIHVecqprRAKIRIRFRKDGILTPYLELPHTYRAALVARLKIMADldiSERRK-PQDGKINFSkF 298
Cdd:TIGR01420 2 LEEILREAVKLGASDIHL-----TAGAPPAMRIDGDLVRIEFEPLTPEDTQKLAREILSE---KQREEfEENGELDFS-F 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 299 SHRHRLELRIaTVPTANGLEDVVMRLLSSSRPiAMDKLGLTPVnfeqLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFL 378
Cdd:TIGR01420 73 SLPGVGRFRV-NAFYQRGGVALVLRLIPSKIP-TFEELGLPPV----LRELAERPRGLILVTGPTGSGKSTTLASMIDYI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 379 -STPERKIWTAEDPIE---------ITQpelRQVQINPKidwTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTG 448
Cdd:TIGR01420 147 nKNKAYHIITIEDPIEyvhtnkrslINQ---REVGEDTL---SFANALRAALREDPDVILIGEMRDLETVELALTAAETG 220
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1277048802 449 HMVLSTLHTNSAPETVTRLVDMGidPFN--------FADSLLAVLGQRLVRK 492
Cdd:TIGR01420 221 HLVFGTLHTNSAAQTIERIIDVF--PAEeqeqirtqLAESLVAIISQRLLPK 270
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
346-492 |
1.31e-38 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 140.22 E-value: 1.31e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 346 LRDAVNRPyGMVLCVGPTGSGKTTTLHSVLGFLSTpERKIWTAEDPIEI---TQPELRQVQINPKIdwTFAKALRSFLRA 422
Cdd:cd19477 3 IKDGIAIG-KNVIVCGGTGSGKTTYIKSILEFIPK-EERIISIEDTEEIvfkHHKNYTQLFFGGNI--TSADCLKSCLRQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 423 DPDIIMVGEIRDaETAQIAIEASLTGH-MVLSTLHTNSAPETVTRLVDMG------------IDPFNFADSLLAVLGQRL 489
Cdd:cd19477 79 RPDRIILGELRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SssnsaarnikfeSLIEGFKDLIDGIVHINH 157
|
...
gi 1277048802 490 VRK 492
Cdd:cd19477 158 HKQ 160
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
355-492 |
5.67e-36 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 133.27 E-value: 5.67e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 355 GMVLCVGPTGSGKTTTLHSVLGFL---STPERKIWTAEDPIEITQPELR-------QVQInPKIDWTFAKALRSFLRADP 424
Cdd:cd19516 12 GLVYVAGATGSGKSTLLAAIYRYIlenDPPDRKIITYEDPIEFVYDGIKskhsiivQSQI-PRHFKSFAKAVREALRRKP 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277048802 425 DIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMgIDP-------FNFADSLLAVLGQRLVRK 492
Cdd:cd19516 91 SLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISL-FPPeerdaaaYDLLSTLRFIIVQRLVRT 164
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
320-492 |
1.53e-29 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 120.20 E-value: 1.53e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 320 VVMRLLSSSRPiAMDKLGLTPVnfeqLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFlstpeRK------IWTAEDPIE 393
Cdd:COG5008 94 MVLRRIETEIP-TLDELGLPPV----LKDLIMEKRGLVLFVGATGSGKSTTLAAMIDH-----RNenssghILTIEDPIE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 394 ---------ITQpelRQVqinpKID-WTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPET 463
Cdd:COG5008 164 fvhkhkksiVTQ---REV----GVDtESYEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQA 236
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1277048802 464 VTRLVdmgidpfNF-------------ADSLLAVLGQRLVRK 492
Cdd:COG5008 237 LDRII-------NFfpeerrpqllmdlSLNLRAIVSQRLVPT 271
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
253-491 |
3.11e-27 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 113.75 E-value: 3.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 253 DGILTPylELPHTYRAALVARLKIMADLDISERRKPQDGKinfskfSHRHRLELRIATVPTANGLEDVVMRLLSSSRPIa 332
Cdd:TIGR02525 61 DEVFGP--EIKPTVKSGAPVDRAIQLRGDENGRYGLGRGE------RVRFRCNFIQATIGKLETAISLTLRVIPSDIPD- 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 333 MDKLGLTPvnfeQLRDAVNRPYGMVLCVGPTGSGKTTTLHSVLGFL--STPERKIWTAEDPIE--ITQPEL----RQVQI 404
Cdd:TIGR02525 132 LKQMGIEP----DLFNSLLPAAGLGLICGETGSGKSTLAASIYQHCgeTYPDRKIVTYEDPIEyiLGSPDDllppAQSQI 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 405 NPKIDwTFAKALRSFLRADPDIIMVGEIRDAETAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMGID------PFNFA 478
Cdd:TIGR02525 208 GRDVD-SFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQMYPPemreaaAFDLL 286
|
250
....*....|...
gi 1277048802 479 DSLLAVLGQRLVR 491
Cdd:TIGR02525 287 SILQYIIVQRLLR 299
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
354-491 |
7.10e-23 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 102.08 E-value: 7.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 354 YGMVLCV-GPTGSGKTTTLHSVLGFLStPERKIWTAEDPIEIT------QPEL-RQVQINPKIDWTFAKALRSFLRADPD 425
Cdd:COG0630 289 NGKSVLVaGGTASGKTTLLNALLSFIP-PDAKIVTIEDTRELNlphenwISLVtRESFGGEEGDVTMFDLLKAALRQRPD 367
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1277048802 426 IIMVGEIRDAEtAQIAIEASLTGHMVLSTLHTNSAPETVTRLVDMGID-PFNFADSLLAVLGQRLVR 491
Cdd:COG0630 368 YIVVGEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLTSPPINvPRTLLQALDLVVFQKRVR 433
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
346-472 |
3.22e-20 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 88.37 E-value: 3.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 346 LRDAVNRPYGMVLCvGPTGSGKTTTLHSVLGFLStPERKIWTAEDPIEITQPELRQVQI--NPKIDW----TFAKALRSF 419
Cdd:cd01130 5 LRLAVRARKNILIS-GGTGSGKTTLLNALLSFIP-PDERIVTIEDTRELQLPHPNVVHLltRPGGGEkgevTMADLLKAA 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1277048802 420 LRADPDIIMVGEIRDAEtAQIAIEASLTGHM-VLSTLHTNSAPETVTRLVDMGI 472
Cdd:cd01130 83 LRMRPDRIIVGEVRGGE-AYDMLQAMNTGHPgSITTIHANSAEDAIDRLATLVL 135
|
|
| T2SSE_N |
pfam05157 |
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the ... |
61-164 |
5.05e-16 |
|
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the N-terminus of members of the Type II secretion system protein E. Proteins in this subfamily are typically involved in Type 4 pilus biogenesis, though some are involved in other processes; for instance aggregation in Myxococcus xanthus. The structure of this domain is now known.
Pssm-ID: 428339 [Multi-domain] Cd Length: 108 Bit Score: 74.29 E-value: 5.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 61 LLDMGFLTRHDLNMALARKMGYPVVDVTQFPVEAEALKKISMKTAQRLNILPLLLRNNLTVVAAVDPTQRKMLEELEFLV 140
Cdd:pfam05157 1 LVELGLLSEEQLAQALAEQLGLPFVDLEALEIDPELLRLLPREFARRHRVLPLREDGGTLVVAVADPLDLALLDELRFLT 80
|
90 100
....*....|....*....|....
gi 1277048802 141 QGRVVATLGDALQIAETIPKVYER 164
Cdd:pfam05157 81 GKRVEPVLATPSDIRRALERLYGS 104
|
|
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
344-470 |
2.89e-14 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 73.93 E-value: 2.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 344 EQLRDAVNRPYGMVLCvGPTGSGKTTTLHSVLGFLSTPERKIwTAEDPIEITQPE--------LRQVQINPKIdwTFAKA 415
Cdd:TIGR02788 135 EFLRLAIASRKNIIIS-GGTGSGKTTFLKSLVDEIPKDERII-TIEDTREIFLPHpnyvhlfySKGGQGLAKV--TPKDL 210
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1277048802 416 LRSFLRADPDIIMVGEIRDAETAQIaIEASLTGHM-VLSTLHTNSAPETVTRLVDM 470
Cdd:TIGR02788 211 LQSCLRMRPDRIILGELRGDEAFDF-IRAVNTGHPgSITTLHAGSPEEAFEQLALM 265
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
338-467 |
2.32e-12 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 68.23 E-value: 2.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 338 LTPVNFEQLRDAVnRPYGMVLCVGPTGSGKTTTLHSVLG--FLSTPERKIWTAEDPIEITQPELRQVQINPKIDWTFAKA 415
Cdd:PRK13894 133 MTAAQREAIIAAV-RAHRNILVIGGTGSGKTTLVNAIINemVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTAL 211
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1277048802 416 LRSFLRADPDIIMVGEIRDAETAQIaIEASLTGHM-VLSTLHTNSAPETVTRL 467
Cdd:PRK13894 212 LKTTLRMRPDRILVGEVRGPEALDL-LMAWNTGHEgGAATLHANNAKAGLDRL 263
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
327-472 |
3.21e-12 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 68.65 E-value: 3.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 327 SSRPIAMDKL----GLTPVNFEQLRDAVNRPYGMVLCvGPTGSGKTTTLHSVLGFLSTPERkIWTAEDPIE--ITQP--- 397
Cdd:COG4962 152 RKRPLTLEDLvalgSLTPEMAEFLRAAVRARLNILVS-GGTGSGKTTLLNALSGFIPPDER-IVTIEDAAElqLQHPhvv 229
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1277048802 398 --ELRQVQINPKIDWTFAKALRSFLRADPDIIMVGEIRDAEtAQIAIEASLTGH-MVLSTLHTNSAPETVTRLVDMGI 472
Cdd:COG4962 230 rlETRPPNVEGAGEVTLRDLVRNALRMRPDRIIVGEVRGAE-ALDMLQAMNTGHdGSMSTLHANSARDALARLETLAL 306
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
346-467 |
2.37e-09 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 59.04 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 346 LRDAVNRPYGMVLCvGPTGSGKTTTLHSVLGFL--STPERKIWTAEDPIEITQPELRQVQINPKIDWTFAKALRSFLRAD 423
Cdd:PRK13833 137 IRSAIDSRLNIVIS-GGTGSGKTTLANAVIAEIvaSAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLR 215
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1277048802 424 PDIIMVGEIRDAeTAQIAIEASLTGHM-VLSTLHTNSAPETVTRL 467
Cdd:PRK13833 216 PDRIIVGEVRDG-AALTLLKAWNTGHPgGVTTIHSNTAMSALRRL 259
|
|
| nfrB |
PRK11234 |
phage adsorption protein NrfB; |
26-146 |
1.72e-07 |
|
phage adsorption protein NrfB;
Pssm-ID: 236884 [Multi-domain] Cd Length: 727 Bit Score: 54.36 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 26 RVGEALTRLGYIDQAQLGLALERQKteRSVPLGQLLLDMGFLTRHDLNMALARKMGYPVVDVTQFPVEAEALKKISMKTA 105
Cdd:PRK11234 483 PLGQILLENGVITEEQLDTALRNRV--RGLRLGQSLLMQGLISAEQLAQALAEQNGVAWESLDPWQIPSSLIAEMPASVA 560
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1277048802 106 QRLNILPLLLRNNLTVVAAVDPTQRKMLEELEFLVqGRVVA 146
Cdd:PRK11234 561 LHYAVLPLREEGDELIVASEDGISPVSLAALTRKL-GRKVR 600
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
346-456 |
2.63e-06 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 49.90 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 346 LRDAVNRPYGMVLCvGPTGSGKTTTLHSVLGFLSTPERKIwTAEDPIEITQPELRQVQINPKIDW------TFAKALRSF 419
Cdd:PRK13851 155 LHACVVGRLTMLLC-GPTGSGKTTMSKTLISAIPPQERLI-TIEDTLELVIPHENHVRLLYSKNGaglgavTAEHLLQAS 232
|
90 100 110
....*....|....*....|....*....|....*...
gi 1277048802 420 LRADPDIIMVGEIRDaETAQIAIEASLTGHM-VLSTLH 456
Cdd:PRK13851 233 LRMRPDRILLGEMRD-DAAWAYLSEVVSGHPgSISTIH 269
|
|
| nfrB |
PRK15489 |
glycosyl transferase family protein; |
26-146 |
3.58e-06 |
|
glycosyl transferase family protein;
Pssm-ID: 237974 [Multi-domain] Cd Length: 703 Bit Score: 50.12 E-value: 3.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277048802 26 RVGEALTRLGYIDQAQLGLALERQKTeRSVPLGQLLLDMGFLTRHDLNMALARKMGYPVVDVTQFPVEAEAlKKISMKTA 105
Cdd:PRK15489 492 RLGELLLTWQAVTPEQLQAALAEQQT-RGKPLGRILLSQGWLDDETLAEAIAFQADLPRVSLDNVVLGALA-DCLPRDLC 569
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1277048802 106 QRLNILPLLLRNNLTVVAAV-DPTQRKMLEELEfLVQGRVVA 146
Cdd:PRK15489 570 VRWRVVPFSIGEDGTLNIAVaSPLPGEALQEVA-RAAGRKVA 610
|
|
| |
