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Conserved domains on  [gi|1276926625|gb|PIP44651|]
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oxidoreductase [Deltaproteobacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_60_8]

Protein Classification

FAD/NAD(P)-binding protein( domain architecture ID 10153147)

FAD/NAD(P)-binding protein similar to anaerobic sulfite reductase, which reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
sulfite_reductase_like cd06221
Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural ...
33-289 1.17e-117

Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.


:

Pssm-ID: 99817 [Multi-domain]  Cd Length: 253  Bit Score: 338.43  E-value: 1.17e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  33 ITSLYALTPTETLYQIRIIDPTARQrFTFQPGQFVMLELPGIGEAPFSISSSPVRHGDIELCIRRVGNLTNFLARLTRGA 112
Cdd:cd06221     1 IVEVVDETEDIKTFTLRLEDDDEEL-FTFKPGQFVMLSLPGVGEAPISISSDPTRRGPLELTIRRVGRVTEALHELKPGD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 113 RVGLSGPFGTHFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLFTYQYEEWR-RFDINL 191
Cdd:cd06221    80 TVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAkRSDVEV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 192 AITVDQAGPGWQGPVGLITEVLKERLGQAGslatGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMFVSLERRMHCGRGKCC 271
Cdd:cd06221   160 ILTVDRAEEGWTGNVGLVTDLLPELTLDPD----NTVAIVCGPPIMMRFVAKELLKLGVPEEQIWVSLERRMKCGVGKCG 235
                         250
                  ....*....|....*...
gi 1276926625 272 RCNIGSTYTCLDGPVFDY 289
Cdd:cd06221   236 HCQIGPKYVCKDGPVFSY 253
 
Name Accession Description Interval E-value
sulfite_reductase_like cd06221
Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural ...
33-289 1.17e-117

Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.


Pssm-ID: 99817 [Multi-domain]  Cd Length: 253  Bit Score: 338.43  E-value: 1.17e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  33 ITSLYALTPTETLYQIRIIDPTARQrFTFQPGQFVMLELPGIGEAPFSISSSPVRHGDIELCIRRVGNLTNFLARLTRGA 112
Cdd:cd06221     1 IVEVVDETEDIKTFTLRLEDDDEEL-FTFKPGQFVMLSLPGVGEAPISISSDPTRRGPLELTIRRVGRVTEALHELKPGD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 113 RVGLSGPFGTHFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLFTYQYEEWR-RFDINL 191
Cdd:cd06221    80 TVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAkRSDVEV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 192 AITVDQAGPGWQGPVGLITEVLKERLGQAGslatGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMFVSLERRMHCGRGKCC 271
Cdd:cd06221   160 ILTVDRAEEGWTGNVGLVTDLLPELTLDPD----NTVAIVCGPPIMMRFVAKELLKLGVPEEQIWVSLERRMKCGVGKCG 235
                         250
                  ....*....|....*...
gi 1276926625 272 RCNIGSTYTCLDGPVFDY 289
Cdd:cd06221   236 HCQIGPKYVCKDGPVFSY 253
PRK08345 PRK08345
cytochrome-c3 hydrogenase subunit gamma; Provisional
30-299 6.15e-87

cytochrome-c3 hydrogenase subunit gamma; Provisional


Pssm-ID: 236247 [Multi-domain]  Cd Length: 289  Bit Score: 261.66  E-value: 6.15e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  30 PAEITSLYALTPTETLYQIRIIDPTARQRFTFQPGQFVMLELPGIGEAPFSISSSPVRHGDIELCIRRVGNLTNFLARLT 109
Cdd:PRK08345    7 DAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGEVPISICSSPTRKGFFELCIRRAGRVTTVIHRLK 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 110 RGARVGLSGPFGTHFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLF----TYQYEEWR 185
Cdd:PRK08345   87 EGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDLLFydelIKDLAEAE 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 186 RFDINLAITVDQAGPGWQG-PVGLITEVLK----ERLGQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMFVSLE 260
Cdd:PRK08345  167 NVKIIQSVTRDPEWPGCHGlPQGFIERVCKgvvtDLFREANTDPKNTYAAICGPPVMYKFVFKELINRGYRPERIYVTLE 246
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1276926625 261 RRMHCGRGKCCRCNIGST----YTCLDGPVFDYWSVMNLKEAI 299
Cdd:PRK08345  247 RRMRCGIGKCGHCIVGTStsikYVCKDGPVFTYFDILSTRGLI 289
Mcr1 COG0543
NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]; ...
32-292 1.29e-79

NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion];


Pssm-ID: 440309 [Multi-domain]  Cd Length: 247  Bit Score: 241.69  E-value: 1.29e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  32 EITSLYALTPTetLYQIRIIDPtaRQRFTFQPGQFVMLELPGIGE-APFSISSSPVRHGDIELCIRRVGNLTNFLARLTR 110
Cdd:COG0543     1 KVVSVERLAPD--VYLLRLEAP--LIALKFKPGQFVMLRVPGDGLrRPFSIASAPREDGTIELHIRVVGKGTRALAELKP 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 111 GARVGLSGPFGTHFPVEEMvGQDILLLAGGLGIVPLRSPLSAVLENrsnYGRVDIMYGARNPAELLFTYQYEEWRRFDIN 190
Cdd:COG0543    77 GDELDVRGPLGNGFPLEDS-GRPVLLVAGGTGLAPLRSLAEALLAR---GRRVTLYLGARTPEDLYLLDELEALADFRVV 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 191 laITVDQagpGWQGPVGLITEVLKERLGqagsLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMFVSLERRMHCGRGKC 270
Cdd:COG0543   153 --VTTDD---GWYGRKGFVTDALKELLA----EDSGDDVYACGPPPMMKAVAELLLERGVPPERIYVSLERRMACGIGMC 223
                         250       260
                  ....*....|....*....|..
gi 1276926625 271 CRCNIGSTYTCLDGPVFDYWSV 292
Cdd:COG0543   224 GGCVVPVGGGCKDGPVFDAAEV 245
sulfite_red_B TIGR02911
sulfite reductase, subunit B; Members of this protein family include the B subunit, one of ...
51-289 1.61e-58

sulfite reductase, subunit B; Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. [Central intermediary metabolism, Sulfur metabolism]


Pssm-ID: 131957 [Multi-domain]  Cd Length: 261  Bit Score: 188.08  E-value: 1.61e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  51 IDPTARQRFTF--QPGQFVMLELPGIGEAPfsISSSPVRHGDIELCIRRVGNLTNFLARLTRGARVGLSGPFGTHFPVEE 128
Cdd:TIGR02911  19 IEYTFRMSYDGpvKPGQFFEVSLPKYGEAP--ISVSGIGEGYIDLTIRRVGKVTDEVFTLKEGDNLFLRGPYGNGFDVDN 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 129 MVGQDILLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLFTYQYEEWRRfDINLAITVDQAGPGWQGPVGL 208
Cdd:TIGR02911  97 YKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWKG-NINLTLTLDEAEEDYKGNIGL 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 209 ITEVLKERLGQAGSLATgtcAIVCGPPVMFRFVCDLLTRAGLPPQKMFVSLERRMHCGRGKCCRCNIGSTYTCLDGPVFD 288
Cdd:TIGR02911 176 VTKYIPELTLKDIEEVQ---AIVVGPPIMMKFTVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKIDDVYVCLDGPVFN 252

                  .
gi 1276926625 289 Y 289
Cdd:TIGR02911 253 Y 253
NAD_binding_1 pfam00175
Oxidoreductase NAD-binding domain; Xanthine dehydrogenases, that also bind FAD/NAD, have ...
136-243 2.53e-14

Oxidoreductase NAD-binding domain; Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity.


Pssm-ID: 425503 [Multi-domain]  Cd Length: 109  Bit Score: 67.67  E-value: 2.53e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 136 LLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLFTYQYEEWR-RFDINLAI--TVDQAGPGWQGPVGLITEV 212
Cdd:pfam00175   1 MIAGGTGIAPVRSMLRAILEDPKDPTQVVLVFGNRNEDDILYREELDELAeKHPGRLTVvyVVSRPEAGWTGGKGRVQDA 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 1276926625 213 LKErlgQAGSLATGTC-AIVCGPPVMFRFVCD 243
Cdd:pfam00175  81 LLE---DHLSLPDEEThVYVCGPPGMIKAVRK 109
 
Name Accession Description Interval E-value
sulfite_reductase_like cd06221
Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural ...
33-289 1.17e-117

Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.


Pssm-ID: 99817 [Multi-domain]  Cd Length: 253  Bit Score: 338.43  E-value: 1.17e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  33 ITSLYALTPTETLYQIRIIDPTARQrFTFQPGQFVMLELPGIGEAPFSISSSPVRHGDIELCIRRVGNLTNFLARLTRGA 112
Cdd:cd06221     1 IVEVVDETEDIKTFTLRLEDDDEEL-FTFKPGQFVMLSLPGVGEAPISISSDPTRRGPLELTIRRVGRVTEALHELKPGD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 113 RVGLSGPFGTHFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLFTYQYEEWR-RFDINL 191
Cdd:cd06221    80 TVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAkRSDVEV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 192 AITVDQAGPGWQGPVGLITEVLKERLGQAGslatGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMFVSLERRMHCGRGKCC 271
Cdd:cd06221   160 ILTVDRAEEGWTGNVGLVTDLLPELTLDPD----NTVAIVCGPPIMMRFVAKELLKLGVPEEQIWVSLERRMKCGVGKCG 235
                         250
                  ....*....|....*...
gi 1276926625 272 RCNIGSTYTCLDGPVFDY 289
Cdd:cd06221   236 HCQIGPKYVCKDGPVFSY 253
PRK08345 PRK08345
cytochrome-c3 hydrogenase subunit gamma; Provisional
30-299 6.15e-87

cytochrome-c3 hydrogenase subunit gamma; Provisional


Pssm-ID: 236247 [Multi-domain]  Cd Length: 289  Bit Score: 261.66  E-value: 6.15e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  30 PAEITSLYALTPTETLYQIRIIDPTARQRFTFQPGQFVMLELPGIGEAPFSISSSPVRHGDIELCIRRVGNLTNFLARLT 109
Cdd:PRK08345    7 DAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGEVPISICSSPTRKGFFELCIRRAGRVTTVIHRLK 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 110 RGARVGLSGPFGTHFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLF----TYQYEEWR 185
Cdd:PRK08345   87 EGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDLLFydelIKDLAEAE 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 186 RFDINLAITVDQAGPGWQG-PVGLITEVLK----ERLGQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMFVSLE 260
Cdd:PRK08345  167 NVKIIQSVTRDPEWPGCHGlPQGFIERVCKgvvtDLFREANTDPKNTYAAICGPPVMYKFVFKELINRGYRPERIYVTLE 246
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1276926625 261 RRMHCGRGKCCRCNIGST----YTCLDGPVFDYWSVMNLKEAI 299
Cdd:PRK08345  247 RRMRCGIGKCGHCIVGTStsikYVCKDGPVFTYFDILSTRGLI 289
Mcr1 COG0543
NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]; ...
32-292 1.29e-79

NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion];


Pssm-ID: 440309 [Multi-domain]  Cd Length: 247  Bit Score: 241.69  E-value: 1.29e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  32 EITSLYALTPTetLYQIRIIDPtaRQRFTFQPGQFVMLELPGIGE-APFSISSSPVRHGDIELCIRRVGNLTNFLARLTR 110
Cdd:COG0543     1 KVVSVERLAPD--VYLLRLEAP--LIALKFKPGQFVMLRVPGDGLrRPFSIASAPREDGTIELHIRVVGKGTRALAELKP 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 111 GARVGLSGPFGTHFPVEEMvGQDILLLAGGLGIVPLRSPLSAVLENrsnYGRVDIMYGARNPAELLFTYQYEEWRRFDIN 190
Cdd:COG0543    77 GDELDVRGPLGNGFPLEDS-GRPVLLVAGGTGLAPLRSLAEALLAR---GRRVTLYLGARTPEDLYLLDELEALADFRVV 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 191 laITVDQagpGWQGPVGLITEVLKERLGqagsLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMFVSLERRMHCGRGKC 270
Cdd:COG0543   153 --VTTDD---GWYGRKGFVTDALKELLA----EDSGDDVYACGPPPMMKAVAELLLERGVPPERIYVSLERRMACGIGMC 223
                         250       260
                  ....*....|....*....|..
gi 1276926625 271 CRCNIGSTYTCLDGPVFDYWSV 292
Cdd:COG0543   224 GGCVVPVGGGCKDGPVFDAAEV 245
sulfite_red_B TIGR02911
sulfite reductase, subunit B; Members of this protein family include the B subunit, one of ...
51-289 1.61e-58

sulfite reductase, subunit B; Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. [Central intermediary metabolism, Sulfur metabolism]


Pssm-ID: 131957 [Multi-domain]  Cd Length: 261  Bit Score: 188.08  E-value: 1.61e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  51 IDPTARQRFTF--QPGQFVMLELPGIGEAPfsISSSPVRHGDIELCIRRVGNLTNFLARLTRGARVGLSGPFGTHFPVEE 128
Cdd:TIGR02911  19 IEYTFRMSYDGpvKPGQFFEVSLPKYGEAP--ISVSGIGEGYIDLTIRRVGKVTDEVFTLKEGDNLFLRGPYGNGFDVDN 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 129 MVGQDILLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLFTYQYEEWRRfDINLAITVDQAGPGWQGPVGL 208
Cdd:TIGR02911  97 YKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWKG-NINLTLTLDEAEEDYKGNIGL 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 209 ITEVLKERLGQAGSLATgtcAIVCGPPVMFRFVCDLLTRAGLPPQKMFVSLERRMHCGRGKCCRCNIGSTYTCLDGPVFD 288
Cdd:TIGR02911 176 VTKYIPELTLKDIEEVQ---AIVVGPPIMMKFTVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKIDDVYVCLDGPVFN 252

                  .
gi 1276926625 289 Y 289
Cdd:TIGR02911 253 Y 253
PRK00054 PRK00054
dihydroorotate dehydrogenase electron transfer subunit; Reviewed
59-288 9.49e-45

dihydroorotate dehydrogenase electron transfer subunit; Reviewed


Pssm-ID: 234601 [Multi-domain]  Cd Length: 250  Bit Score: 152.33  E-value: 9.49e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  59 FTFQPGQFVMLELPGI---GEAPFSISSspVRHGDIELCIRRVGNLTNFLARLTRGARVGLSGPFGTHFPVEEmVGQDIL 135
Cdd:PRK00054   30 FDMKPGQFVMVWVPGVeplLERPISISD--IDKNEITILYRKVGEGTKKLSKLKEGDELDIRGPLGNGFDLEE-IGGKVL 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 136 LLAGGLGIVPLrspLSAVLENRSNYGRVDIMYGARNPAELLFTyqyEEWRRFDiNLAITVDQagpGWQGPVGLITEVLKE 215
Cdd:PRK00054  107 LVGGGIGVAPL---YELAKELKKKGVEVTTVLGARTKDEVIFE---EEFAKVG-DVYVTTDD---GSYGFKGFVTDVLDE 176
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1276926625 216 RLGQAgslatgTCAIVCGPPVMFRFVCDLLTRAGLPPQkmfVSLERRMHCGRGKC--CRCNIGSTY--TCLDGPVFD 288
Cdd:PRK00054  177 LDSEY------DAIYSCGPEIMMKKVVEILKEKKVPAY---VSLERRMKCGIGACgaCVCDTETGGkrVCKDGPVFS 244
DHOD_e_trans cd06218
FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. ...
46-288 1.05e-40

FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.


Pssm-ID: 99814 [Multi-domain]  Cd Length: 246  Bit Score: 141.53  E-value: 1.05e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  46 YQIRIIDPTARQRFtfQPGQFVMLELPGIGEA----PFSISSSPVRHGDIELCIRRVGNLTNFLARLTRGARVGLSGPFG 121
Cdd:cd06218    12 YRLVLEAPEIAAAA--KPGQFVMLRVPDGSDPllrrPISIHDVDPEEGTITLLYKVVGKGTRLLSELKAGDELDVLGPLG 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 122 THFPVEEmVGQDILLLAGGLGIVPLRsPLSAVLENRSNygRVDIMYGARNPAELLFTyqyEEWRRFDINLAITVDQagpG 201
Cdd:cd06218    90 NGFDLPD-DDGKVLLVGGGIGIAPLL-FLAKQLAERGI--KVTVLLGFRSADDLFLV---EEFEALGAEVYVATDD---G 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 202 WQGPVGLITEVLKERLgqagsLATGTCAI-VCGPPVMFRFVCDLLTRAGLPPQkmfVSLERRMHCGRGKC--CRCNI--- 275
Cdd:cd06218   160 SAGTKGFVTDLLKELL-----AEARPDVVyACGPEPMLKAVAELAAERGVPCQ---VSLEERMACGIGAClgCVVKTkdd 231
                         250
                  ....*....|....*
gi 1276926625 276 --GSTYTCLDGPVFD 288
Cdd:cd06218   232 egGYKRVCKDGPVFD 246
DHOD_e_trans_like2 cd06220
FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like ...
58-288 7.56e-39

FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.


Pssm-ID: 99816 [Multi-domain]  Cd Length: 233  Bit Score: 136.61  E-value: 7.56e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  58 RFTFQPGQFVMLELPGIGEAPFSISSSPvrhGDIELCIRRVGNLTNFLARLTRGARVGLSGPFGTHFpveEMVGQDILLL 137
Cdd:cd06220    21 DFDFKPGQFVMVWVPGVDEIPMSLSYID---GPNSITVKKVGEATSALHDLKEGDKLGIRGPYGNGF---ELVGGKVLLI 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 138 AGGLGIVPLrSPLSAVLENRSNygrVDIMYGARNPAELLFTYQYEEWRRfdinLAITVDQAGPGWQGPVgliTEVLKERL 217
Cdd:cd06220    95 GGGIGIAPL-APLAERLKKAAD---VTVLLGARTKEELLFLDRLRKSDE----LIVTTDDGSYGFKGFV---TDLLKELD 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1276926625 218 GQAGSLatgtcAIVCGPPVMFRFVCDLLTRAGLPPQkmfVSLERRMHCGRGKCCRCNIGST--YTCLDGPVFD 288
Cdd:cd06220   164 LEEYDA-----IYVCGPEIMMYKVLEILDERGVRAQ---FSLERYMKCGIGICGSCCIDPTglRVCRDGPVFD 228
FNR_like cd00322
Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a ...
42-252 1.53e-36

Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).


Pssm-ID: 99778 [Multi-domain]  Cd Length: 223  Bit Score: 130.26  E-value: 1.53e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  42 TETLYQIRIIDPTARQRFTFQPGQFVMLELPGIGE---APFSISSSPVRHGDIELCIRRVGN--LTNFLARLTRGARVGL 116
Cdd:cd00322     4 EDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRglrRAYSIASSPDEEGELELTVKIVPGgpFSAWLHDLKPGDEVEV 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 117 SGPFGTHFPVEEmVGQDILLLAGGLGIVPLRSPLSAVLENRSNyGRVDIMYGARNPAELLFTYQYEEWRRFDINLAITVD 196
Cdd:cd00322    84 SGPGGDFFLPLE-ESGPVVLIAGGIGITPFRSMLRHLAADKPG-GEITLLYGARTPADLLFLDELEELAKEGPNFRLVLA 161
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1276926625 197 QAGPGWQGPVGLITEVLKERLGQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPP 252
Cdd:cd00322   162 LSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPPAMAKAVREALVSLGVPE 217
FNR_iron_sulfur_binding_3 cd06217
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
29-252 5.05e-36

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99813 [Multi-domain]  Cd Length: 235  Bit Score: 129.31  E-value: 5.05e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  29 LPAEITSLYALTPT-ETLyqirIIDPTARQRFTFQPGQFVMLELPGIG----EAPFSISSSPVRHGDIELCIRRV--GNL 101
Cdd:cd06217     2 RVLRVTEIIQETPTvKTF----RLAVPDGVPPPFLAGQHVDLRLTAIDgytaQRSYSIASSPTQRGRVELTVKRVpgGEV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 102 TNFLAR-LTRGARVGLSGPFGThFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLEnRSNYGRVDIMYGARNPAELLFTYQ 180
Cdd:cd06217    78 SPYLHDeVKVGDLLEVRGPIGT-FTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRD-LGWPVPFRLLYSARTAEDVIFRDE 155
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1276926625 181 YEEWRRFDINLAITV---DQAGPGWQGPVGLITEVLKERLgqAGSLATGTCaIVCGPPVMFRFVCDLLTRAGLPP 252
Cdd:cd06217   156 LEQLARRHPNLHVTEaltRAAPADWLGPAGRITADLIAEL--VPPLAGRRV-YVCGPPAFVEAATRLLLELGVPR 227
phenol_2-monooxygenase_like cd06211
Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use ...
31-256 1.59e-34

Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.


Pssm-ID: 99807  Cd Length: 238  Bit Score: 125.13  E-value: 1.59e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  31 AEITSLYALTPTETLYQIRIIDPtarQRFTFQPGQFVMLELPGI-GEAPFSISSSPVRHGDIELCIRRV--GNLTNFLAR 107
Cdd:cd06211     9 GTVVEIEDLTPTIKGVRLKLDEP---EEIEFQAGQYVNLQAPGYeGTRAFSIASSPSDAGEIELHIRLVpgGIATTYVHK 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 108 -LTRGARVGLSGPFGTHFpVEEMVGQDILLLAGGLGIVPLRSPLSAVLEnrSNYGR-VDIMYGARNPAEL----LFTYQY 181
Cdd:cd06211    86 qLKEGDELEISGPYGDFF-VRDSDQRPIIFIAGGSGLSSPRSMILDLLE--RGDTRkITLFFGARTRAELyyldEFEALE 162
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1276926625 182 EEWRRFDINLAITVDQAGPGWQGPVGLITEVLKERLGQAGSlatGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMF 256
Cdd:cd06211   163 KDHPNFKYVPALSREPPESNWKGFTGFVHDAAKKHFKNDFR---GHKAYLCGPPPMIDACIKTLMQGRLFERDIY 234
O2ase_reductase_like cd06187
The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial ...
33-257 8.39e-33

The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.


Pssm-ID: 99784 [Multi-domain]  Cd Length: 224  Bit Score: 120.39  E-value: 8.39e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  33 ITSLYALTPTetlyqIRIIDPTARQRFTFQPGQFVMLELPGIGEA--PFSISSSPVRHGDIELCIRRV--GNLTNFLARL 108
Cdd:cd06187     1 VVSVERLTHD-----IAVVRLQLDQPLPFWAGQYVNVTVPGRPRTwrAYSPANPPNEDGEIEFHVRAVpgGRVSNALHDE 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 109 TR-GARVGLSGPFGThFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNYgRVDIMYGARNPAELlftYQYEE---- 183
Cdd:cd06187    76 LKvGDRVRLSGPYGT-FYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEPR-PVHLFFGARTERDL---YDLEGllal 150
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1276926625 184 ---WRRFDINlaITVDQAGPGWQGPVGLITEVLkerlGQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMFV 257
Cdd:cd06187   151 aarHPWLRVV--PVVSHEEGAWTGRRGLVTDVV----GRDGPDWADHDIYICGPPAMVDATVDALLARGAPPERIHF 221
DHOD_e_trans_like cd06192
FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like ...
40-288 3.63e-32

FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.


Pssm-ID: 99789 [Multi-domain]  Cd Length: 243  Bit Score: 119.35  E-value: 3.63e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  40 TPTETLYQIRIIDPTARqrFTFQPGQFVML---ELPGIGEAPFSISSSPVRHGDIELCIRRVGNLTNFLARLTRGARVGL 116
Cdd:cd06192     6 QLEPNLVLLTIKAPLAA--RLFRPGQFVFLrnfESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAELKPGEKLDV 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 117 SGPFGTHFPVEEMvGQDILLLAGGLGIVPLRSPLSAvleNRSNYGRVDIMYGARNPAELLFTyqyEEWRRFDINLAITVD 196
Cdd:cd06192    84 MGPLGNGFEGPKK-GGTVLLVAGGIGLAPLLPIAKK---LAANGNKVTVLAGAKKAKEEFLD---EYFELPADVEIWTTD 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 197 QagpGWQGPVGLITEVLKE-RLGQAGSLatgtcaIVCGPPVMFRFVCDLLtRAGLPPQKMFVSLERRMHCGRGKC----C 271
Cdd:cd06192   157 D---GELGLEGKVTDSDKPiPLEDVDRI------IVAGSDIMMKAVVEAL-DEWLQLIKASVSNNSPMCCGIGICgactI 226
                         250
                  ....*....|....*..
gi 1276926625 272 RCNIGSTYTCLDGPVFD 288
Cdd:cd06192   227 ETKHGVKRLCKDGPVFR 243
Fpr COG1018
Flavodoxin/ferredoxin--NADP reductase [Energy production and conversion];
28-252 1.45e-31

Flavodoxin/ferredoxin--NADP reductase [Energy production and conversion];


Pssm-ID: 440641 [Multi-domain]  Cd Length: 231  Bit Score: 117.20  E-value: 1.45e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  28 TLPAEITSLYALTPTetLYQIRIIDPTARQRFTFQPGQFVMLELPGIGEA---PFSISSSPvRHGDIELCIRRV--GNLT 102
Cdd:COG1018     3 FRPLRVVEVRRETPD--VVSFTLEPPDGAPLPRFRPGQFVTLRLPIDGKPlrrAYSLSSAP-GDGRLEITVKRVpgGGGS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 103 NFLA-RLTRGARVGLSGPFGtHFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSnYGRVDIMYGARNPAELLFtyqY 181
Cdd:COG1018    80 NWLHdHLKVGDTLEVSGPRG-DFVLDPEPARPLLLIAGGIGITPFLSMLRTLLARGP-FRPVTLVYGARSPADLAF---R 154
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1276926625 182 EEWRRF-----DINLAITVDQAGPGWQgpvGLITEvlkERLGQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPP 252
Cdd:COG1018   155 DELEALaarhpRLRLHPVLSREPAGLQ---GRLDA---ELLAALLPDPADAHVYLCGPPPMMEAVRAALAELGVPE 224
flavin_oxioreductase cd06189
NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron ...
31-256 4.40e-30

NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.


Pssm-ID: 99786 [Multi-domain]  Cd Length: 224  Bit Score: 113.03  E-value: 4.40e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  31 AEITSLYALTPTetLYQIRIIDPtarQRFTFQPGQFVMLELPGIGEAPFSISSSPVRHGDIELCIRRV--GNLTN-FLAR 107
Cdd:cd06189     1 CKVESIEPLNDD--VYRVRLKPP---APLDFLAGQYLDLLLDDGDKRPFSIASAPHEDGEIELHIRAVpgGSFSDyVFEE 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 108 LTRGARVGLSGPFGThFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNyGRVDIMYGARNPAELlftYQYEEWRRF 187
Cdd:cd06189    76 LKENGLVRIEGPLGD-FFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGSK-RPIHLYWGARTEEDL---YLDELLEAW 150
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1276926625 188 DINLA-IT----VDQAGPGWQGPVGLITEVLKERLgqaGSLAtgTCAI-VCGPPVMFRFVCDLLTRAGLPPQKMF 256
Cdd:cd06189   151 AEAHPnFTyvpvLSEPEEGWQGRTGLVHEAVLEDF---PDLS--DFDVyACGSPEMVYAARDDFVEKGLPEENFF 220
T4MO_e_transfer_like cd06190
Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates ...
61-252 6.83e-29

Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.


Pssm-ID: 99787  Cd Length: 232  Bit Score: 110.42  E-value: 6.83e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  61 FQPGQFVMLELPGI-GEAPFSISSSPVRHGDIELCIRRV--GNLTNFLA-RLTRGARVGLSGPFGTHFPVEEmVGQDILL 136
Cdd:cd06190    24 FLPGQYALLALPGVeGARAYSMANLANASGEWEFIIKRKpgGAASNALFdNLEPGDELELDGPYGLAYLRPD-EDRDIVC 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 137 LAGGLGIVPLRSPLSAVLENRSNYGR-VDIMYGARNPAELLFTYQYEEWRRFDINLAITVD------QAGPGWQGPVGLI 209
Cdd:cd06190   103 IAGGSGLAPMLSILRGAARSPYLSDRpVDLFYGGRTPSDLCALDELSALVALGARLRVTPAvsdagsGSAAGWDGPTGFV 182
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1276926625 210 TEVLKERLgqaGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPP 252
Cdd:cd06190   183 HEVVEATL---GDRLAEFEFYFAGPPPMVDAVQRMLMIEGVVP 222
FNR_iron_sulfur_binding_1 cd06215
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
57-256 3.42e-28

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99811 [Multi-domain]  Cd Length: 231  Bit Score: 108.45  E-value: 3.42e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  57 QRFTFQPGQFVMLELPGIGEA---PFSISSSPVRHGDIELCIRRV--GNLTNFLAR-LTRGARVGLSGPFGtHFPVEEMV 130
Cdd:cd06215    24 SLFAYKPGQFLTLELEIDGETvyrAYTLSSSPSRPDSLSITVKRVpgGLVSNWLHDnLKVGDELWASGPAG-EFTLIDHP 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 131 GQDILLLAGGLGIVPLRSPLSAVLENRSNygrVDI--MYGARNPAELLFtyqYEEWRRF-----DINLAITVDQAGPG-W 202
Cdd:cd06215   103 ADKLLLLSAGSGITPMMSMARWLLDTRPD---ADIvfIHSARSPADIIF---ADELEELarrhpNFRLHLILEQPAPGaW 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1276926625 203 QGPVGLITevlKERLGQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMF 256
Cdd:cd06215   177 GGYRGRLN---AELLALLVPDLKERTVFVCGPAGFMKAVKSLLAELGFPMSRFH 227
monooxygenase_like cd06212
The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial ...
31-257 1.17e-27

The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.


Pssm-ID: 99808 [Multi-domain]  Cd Length: 232  Bit Score: 107.03  E-value: 1.17e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  31 AEITSLYALTPTETLYQIRIIDPtarQRFTFQPGQFVMLELPGIGEA-PFSISSSPVRHGDIELCIRRV--GNLTNFLA- 106
Cdd:cd06212     3 GTVVAVEALTHDIRRLRLRLEEP---EPIKFFAGQYVDITVPGTEETrSFSMANTPADPGRLEFIIKKYpgGLFSSFLDd 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 107 RLTRGARVGLSGPFGTHFPVEEMVGqDILLLAGGLGIVPLRSPLSAVLENRSNYgRVDIMYGARNPAELLFTYQYEE--- 183
Cdd:cd06212    80 GLAVGDPVTVTGPYGTCTLRESRDR-PIVLIGGGSGMAPLLSLLRDMAASGSDR-PVRFFYGARTARDLFYLEEIAAlge 157
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1276926625 184 ---WRRFDINLAITVDQAGpgWQGPVGLITEVLKERLgqagSLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMFV 257
Cdd:cd06212   158 kipDFTFIPALSESPDDEG--WSGETGLVTEVVQRNE----ATLAGCDVYLCGPPPMIDAALPVLEMSGVPPDQIFY 228
DHOD_e_trans_like1 cd06219
FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like ...
42-288 1.67e-27

FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD, forming FADH2 via a semiquinone intermediate, and then transfers a hydride ion to convert NADP+ to NADPH.


Pssm-ID: 99815 [Multi-domain]  Cd Length: 248  Bit Score: 106.89  E-value: 1.67e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  42 TETLYQIRIIDP-TARQRftfQPGQFVMLELPGIGE-APFSISSSPVRHGDIELCIRRVGNLTNFLARLTRGARV-GLSG 118
Cdd:cd06219    10 APNVKLFEIEAPlIAKKA---KPGQFVIVRADEKGErIPLTIADWDPEKGTITIVVQVVGKSTRELATLEEGDKIhDVVG 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 119 PFGTHFPVEEMvgQDILLLAGGLGIVPLrSPLSAVLENRSNygRVDIMYGARNpAELLFtYQyEEWRRFDINLAITVDQA 198
Cdd:cd06219    87 PLGKPSEIENY--GTVVFVGGGVGIAPI-YPIAKALKEAGN--RVITIIGART-KDLVI-LE-DEFRAVSDELIITTDDG 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 199 GPGWQGpvgLITEVLKERLGQAGSLAtgtCAIVCGPPVMFRFVCDLLTRAGLPpqkMFVSLERRMHCGRGKC--CRCNIG 276
Cdd:cd06219   159 SYGEKG---FVTDPLKELIESGEKVD---LVIAIGPPIMMKAVSELTRPYGIP---TVVSLNPIMVDGTGMCgaCRVTVG 229
                         250
                  ....*....|....
gi 1276926625 277 ST--YTCLDGPVFD 288
Cdd:cd06219   230 GEtkFACVDGPEFD 243
NqrF COG2871
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and ...
31-256 6.48e-27

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


Pssm-ID: 442118 [Multi-domain]  Cd Length: 396  Bit Score: 108.41  E-value: 6.48e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  31 AEITSLYALTPTETLYQIRIIDPTArqrFTFQPGQFVMLELPG---------IGEAP---------------FSISSSPV 86
Cdd:COG2871   134 ATVVSNENVTTFIKELVLELPEGEE---IDFKAGQYIQIEVPPyevdfkdfdIPEEEkfglfdkndeevtraYSMANYPA 210
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  87 RHGDIELCIRRV--------GNLTNFLARLTRGARVGLSGPFGTHFPVEEmvGQDILLLAGGLGIVPLRSPLSAVLENRS 158
Cdd:COG2871   211 EKGIIELNIRIAtppmdvppGIGSSYIFSLKPGDKVTISGPYGEFFLRDS--DREMVFIGGGAGMAPLRSHIFDLLERGK 288
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 159 NYGRVDIMYGARNPAELLFTYQYE----EWRRFDINLAITVDQAGPGWQGPVGLITEVLKERLGQAGSLATGTCAIVCGP 234
Cdd:COG2871   289 TDRKITFWYGARSLRELFYLEEFRelekEHPNFKFHPALSEPLPEDNWDGETGFIHEVLYENYLKDHPAPEDCEAYLCGP 368
                         250       260
                  ....*....|....*....|..
gi 1276926625 235 PVMFRFVCDLLTRAGLPPQKMF 256
Cdd:COG2871   369 PPMIDAVIKMLDDLGVEEENIY 390
cyt_b5_reduct_like cd06183
Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as ...
53-257 8.63e-27

Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.


Pssm-ID: 99780 [Multi-domain]  Cd Length: 234  Bit Score: 104.96  E-value: 8.63e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  53 PTARQRFTFQPGQFVMLELPGIGEA---PFSISSSPVRHGDIELCIRRV--GNLTNFLARLTRGARVGLSGPFGTHFPVE 127
Cdd:cd06183    21 PSPDQVLGLPVGQHVELKAPDDGEQvvrPYTPISPDDDKGYFDLLIKIYpgGKMSQYLHSLKPGDTVEIRGPFGKFEYKP 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 128 EMVGQDILLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLFTYQYEEWR-----RFDINLaiTVDQAGPGW 202
Cdd:cd06183   101 NGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREELDELAkkhpdRFKVHY--VLSRPPEGW 178
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1276926625 203 QGPVGLITEVLKERLGQAGSlATGTCAIVCGPPVMFRFVC-DLLTRAGLPPQKMFV 257
Cdd:cd06183   179 KGGVGFITKEMIKEHLPPPP-SEDTLVLVCGPPPMIEGAVkGLLKELGYKKDNVFK 233
oxygenase_e_transfer_subunit cd06213
The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial ...
61-256 1.73e-24

The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.


Pssm-ID: 99809  Cd Length: 227  Bit Score: 98.54  E-value: 1.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  61 FQPGQFVMLELPGIGEA-PFSISSSPVRHGDIELCIRRV--GNLTNFLARLTR-GARVGLSGPFGThFPVEEmVGQDILL 136
Cdd:cd06213    28 YKAGQYAELTLPGLPAArSYSFANAPQGDGQLSFHIRKVpgGAFSGWLFGADRtGERLTVRGPFGD-FWLRP-GDAPILC 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 137 LAGGLGIvplrSPLSAVLENRSNYGR---VDIMYGARNPAELlftYQYEE-------WR-RFDINLAITVDQAGPGWQGP 205
Cdd:cd06213   106 IAGGSGL----APILAILEQARAAGTkrdVTLLFGARTQRDL---YALDEiaaiaarWRgRFRFIPVLSEEPADSSWKGA 178
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1276926625 206 VGLITEVLKERLGQAGSlatgtcAIVCGPPVMFRFVCDLLTRAGLPPQKMF 256
Cdd:cd06213   179 RGLVTEHIAEVLLAATE------AYLCGPPAMIDAAIAVLRALGIAREHIH 223
COG4097 COG4097
Predicted ferric reductase [Inorganic ion transport and metabolism];
51-255 2.01e-24

Predicted ferric reductase [Inorganic ion transport and metabolism];


Pssm-ID: 443273 [Multi-domain]  Cd Length: 442  Bit Score: 101.89  E-value: 2.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  51 IDPTARQRFTFQPGQFVMLELPG----IGEAPFSISSSPVRHGDIELCIRRVGNLTNFLARLTRGARVGLSGPFGTHFPV 126
Cdd:COG4097   234 LRPEGGRWLGHRAGQFAFLRFDGspfwEEAHPFSISSAPGGDGRLRFTIKALGDFTRRLGRLKPGTRVYVEGPYGRFTFD 313
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 127 EEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLFTYQYEEW--RRFDINLAITVDqagpGWQG 204
Cdd:COG4097   314 RRDTAPRQVWIAGGIGITPFLALLRALAARPGDQRPVDLFYCVRDEEDAPFLEELRALaaRLAGLRLHLVVS----DEDG 389
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1276926625 205 PVGlitevlKERLGQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQKM 255
Cdd:COG4097   390 RLT------AERLRRLVPDLAEADVFFCGPPGMMDALRRDLRALGVPARRI 434
PRK06222 PRK06222
sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein;
32-288 1.34e-23

sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein;


Pssm-ID: 235747 [Multi-domain]  Cd Length: 281  Bit Score: 97.18  E-value: 1.34e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  32 EITSLYALTPTETLYQI---RIidptARQRftfQPGQFVMLELPGIGE-APFSISSSPVRHGDIELCIRRVGNLTNFLAR 107
Cdd:PRK06222    3 KILEKEELAPNVFLMEIeapRV----AKKA---KPGQFVIVRIDEKGErIPLTIADYDREKGTITIVFQAVGKSTRKLAE 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 108 LTRGARV-GLSGPFGThfPVE-EMVGqDILLLAGGLGIVPLrSPLSAVLENRSNYgrVDIMYGARNpAELLFTYqyEEWR 185
Cdd:PRK06222   76 LKEGDSIlDVVGPLGK--PSEiEKFG-TVVCVGGGVGIAPV-YPIAKALKEAGNK--VITIIGARN-KDLLILE--DEMK 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 186 RFDINLAITVDQagpGWQGPVGLITEVLKERLGQAGSLAtgtCAIVCGPPVMFRFVCDLLTRAGLPpqkMFVSLERRMHC 265
Cdd:PRK06222  147 AVSDELYVTTDD---GSYGRKGFVTDVLKELLESGKKVD---RVVAIGPVIMMKFVAELTKPYGIK---TIVSLNPIMVD 217
                         250       260
                  ....*....|....*....|....*..
gi 1276926625 266 GRGKC--CRCNIGST--YTCLDGPVFD 288
Cdd:PRK06222  218 GTGMCgaCRVTVGGEtkFACVDGPEFD 244
MMO_FAD_NAD_binding cd06210
Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent ...
31-251 8.08e-23

Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.


Pssm-ID: 99806  Cd Length: 236  Bit Score: 94.33  E-value: 8.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  31 AEITSLYALTPTETLYQIRIIDP-TARQRFTFQPGQFVMLELPGIGEA-PFSISSSPVRHGDIELCIRRV--GNLTNFLA 106
Cdd:cd06210     4 AEIVAVDRVSSNVVRLRLQPDDAeGAGIAAEFVPGQFVEIEIPGTDTRrSYSLANTPNWDGRLEFLIRLLpgGAFSTYLE 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 107 RLTR-GARVGLSGPFGThFPVEEMVGQDILLLAGGLGIVPLRSPLSAvLENRSNYGRVDIMYGARNPAELLFTYQYEEWR 185
Cdd:cd06210    84 TRAKvGQRLNLRGPLGA-FGLRENGLRPRWFVAGGTGLAPLLSMLRR-MAEWGEPQEARLFFGVNTEAELFYLDELKRLA 161
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1276926625 186 RFDINLAIT--VDQAGPGWQGPVGLITEVLKERLgqaGSLATGTCAIVCGPPVMFRFVCDLLTRAGLP 251
Cdd:cd06210   162 DSLPNLTVRicVWRPGGEWEGYRGTVVDALREDL---ASSDAKPDIYLCGPPGMVDAAFAAAREAGVP 226
FNR_like_3 cd06198
NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer ...
42-255 2.69e-22

NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.


Pssm-ID: 99795 [Multi-domain]  Cd Length: 216  Bit Score: 92.32  E-value: 2.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  42 TETLYQIRI-IDPTARQrFTFQPGQFVMLELPGIGEA---PFSISSSPVRHGDIELCIRRVGNLTNFLARLTR-GARVGL 116
Cdd:cd06198     4 TEVRPTTTLtLEPRGPA-LGHRAGQFAFLRFDASGWEephPFTISSAPDPDGRLRFTIKALGDYTRRLAERLKpGTRVTV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 117 SGPFGtHFPVEEmVGQDILLLAGGLGIVPLRSPLSAvLENRSNYGRVDIMYGARNPAELLFTyqyEEWRRFDINLAITV- 195
Cdd:cd06198    83 EGPYG-RFTFDD-RRARQIWIAGGIGITPFLALLEA-LAARGDARPVTLFYCVRDPEDAVFL---DELRALAAAAGVVLh 156
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1276926625 196 --DQAGPGWQGPVGLITEvlkerlgQAGSLATGTCAIvCGPPVMFRFVCDLLTRAGLPPQKM 255
Cdd:cd06198   157 viDSPSDGRLTLEQLVRA-------LVPDLADADVWF-CGPPGMADALEKGLRALGVPARRF 210
PRK12778 PRK12778
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ...
62-288 2.88e-22

bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;


Pssm-ID: 237200 [Multi-domain]  Cd Length: 752  Bit Score: 96.73  E-value: 2.88e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  62 QPGQFVMLELPGIGE-APFSISSSPVRHGDIELCIRRVGNLTNFLARLTRGARV-GLSGPFGTHFPVEEMvgQDILLLAG 139
Cdd:PRK12778   29 KPGQFVIVRVGEKGErIPLTIADADPEKGTITLVIQEVGLSTTKLCELNEGDYItDVVGPLGNPSEIENY--GTVVCAGG 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 140 GLGIVPLRsPLSAVLENRSNygRVDIMYGARNPAELLFTyqyEEWRRFDINLAITVDQagpGWQGPVGLITEVLKERLGQ 219
Cdd:PRK12778  107 GVGVAPML-PIVKALKAAGN--RVITILGGRSKELIILE---DEMRESSDEVIIMTDD---GSYGRKGLVTDGLEEVIKR 177
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1276926625 220 AGSLatgTCAIVCGPPVMFRFVCDLLTRAGLPpqkMFVSLERRMHCGRGKC--CRCNIGST--YTCLDGPVFD 288
Cdd:PRK12778  178 ETKV---DKVFAIGPAIMMKFVCLLTKKYGIP---TIVSLNTIMVDGTGMCgaCRVTVGGKtkFACVDGPEFD 244
FNR1 cd06195
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible ...
42-252 2.23e-21

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99792 [Multi-domain]  Cd Length: 241  Bit Score: 90.32  E-value: 2.23e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  42 TETLYQIRIidpTARQRFTFQPGQFVMLELPGIGEAP----FSISSSPvRHGDIELCIRRV--GNLTNFLARLTRGARVG 115
Cdd:cd06195     9 TDDLFSFRV---TRDIPFRFQAGQFTKLGLPNDDGKLvrraYSIASAP-YEENLEFYIILVpdGPLTPRLFKLKPGDTIY 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 116 LS-GPFGtHFPVEEMV-GQDILLLAGGLGIVPLRSPLSAvLENRSNYGRVDIMYGARNPAELLFTYQYEEWR-----RFD 188
Cdd:cd06195    85 VGkKPTG-FLTLDEVPpGKRLWLLATGTGIAPFLSMLRD-LEIWERFDKIVLVHGVRYAEELAYQDEIEALAkqyngKFR 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1276926625 189 INLAITVDQAGPGWQGPV-GLIT-EVLKERLGQAGSLATgTCAIVCGPPVMFRFVCDLLTRAGLPP 252
Cdd:cd06195   163 YVPIVSREKENGALTGRIpDLIEsGELEEHAGLPLDPET-SHVMLCGNPQMIDDTQELLKEKGFSK 227
NADH_quinone_reductase cd06188
Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) ...
59-256 5.46e-20

Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.


Pssm-ID: 99785 [Multi-domain]  Cd Length: 283  Bit Score: 87.36  E-value: 5.46e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  59 FTFQPGQFVMLELPGIGEAP--------------------------------FSISSSPVRHGDIELCIR---------- 96
Cdd:cd06188    37 IAFKAGGYIQIEIPAYEIAYadfdvaekyradwdkfglwqlvfkhdepvsraYSLANYPAEEGELKLNVRiatpppgnsd 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  97 -RVGNLTNFLARLTRGARVGLSGPFGTHFPVE---EMVgqdilLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNP 172
Cdd:cd06188   117 iPPGIGSSYIFNLKPGDKVTASGPFGEFFIKDtdrEMV-----FIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSL 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 173 AELLFTYQYE----EWRRFDINLAITVDQAGPGWQGPVGLITEVLKERLGQAGsLATGTCAI-VCGPPVMFRFVCDLLTR 247
Cdd:cd06188   192 KELFYQEEFEalekEFPNFKYHPVLSEPQPEDNWDGYTGFIHQVLLENYLKKH-PAPEDIEFyLCGPPPMNSAVIKMLDD 270

                  ....*....
gi 1276926625 248 AGLPPQKMF 256
Cdd:cd06188   271 LGVPRENIA 279
BenDO_FAD_NAD cd06209
Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons ...
31-256 1.29e-18

Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.


Pssm-ID: 99805 [Multi-domain]  Cd Length: 228  Bit Score: 82.64  E-value: 1.29e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  31 AEITSLYALTPTetlyQIRI-IDPTARQRFTFQPGQFVMLELPGIGEA-PFSISSSPvRHGDIELCIRRV--GNLTNFLA 106
Cdd:cd06209     4 ATVTEVERLSDS----TIGLtLELDEAGALAFLPGQYVNLQVPGTDETrSYSFSSAP-GDPRLEFLIRLLpgGAMSSYLR 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 107 RLTR-GARVGLSGPFGThFPVEEMVGQdILLLAGGLGIVPLRSPLSAVLENRSNYgRVDIMYGARNPAELLFTYQYEEWR 185
Cdd:cd06209    79 DRAQpGDRLTLTGPLGS-FYLREVKRP-LLMLAGGTGLAPFLSMLDVLAEDGSAH-PVHLVYGVTRDADLVELDRLEALA 155
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1276926625 186 R--FDINLAITVDQAgPGWQGPVGLITEVLKERLGQAGslatGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMF 256
Cdd:cd06209   156 ErlPGFSFRTVVADP-DSWHPRKGYVTDHLEAEDLNDG----DVDVYLCGPPPMVDAVRSWLDEQGIEPANFY 223
PA_degradation_oxidoreductase_like cd06214
NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation ...
51-254 2.41e-18

NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99810 [Multi-domain]  Cd Length: 241  Bit Score: 82.21  E-value: 2.41e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  51 IDPTARQRFTFQPGQFVMLELPGIGEA---PFSISSSPVRhGDIELCIRRV--GNLTNFLA-RLTRGARVGLSGPFGTHF 124
Cdd:cd06214    23 VPEELRDAFRYRPGQFLTLRVPIDGEEvrrSYSICSSPGD-DELRITVKRVpgGRFSNWANdELKAGDTLEVMPPAGRFT 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 125 PVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNyGRVDIMYGARNPAELLFtyqYEEWR--------RFDInlaITV- 195
Cdd:cd06214   102 LPPLPGARHYVLFAAGSGITPVLSILKTALAREPA-SRVTLVYGNRTEASVIF---REELAdlkarypdRLTV---IHVl 174
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 196 DQAGPGWQGPVG-LITEVLKERLGQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQK 254
Cdd:cd06214   175 SREQGDPDLLRGrLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGVPAER 234
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
28-256 1.13e-17

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 81.84  E-value: 1.13e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  28 TLPAEITSLYALTPTetLYQIRIIDPtARQRFTFQPGQFVMLELPGIGEAPFSISSSPVRHGDIELCIRRV--GNLTNFL 105
Cdd:PRK07609  102 KLPCRVASLERVAGD--VMRLKLRLP-ATERLQYLAGQYIEFILKDGKRRSYSIANAPHSGGPLELHIRHMpgGVFTDHV 178
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 106 -ARLTRGARVGLSGPFGTHFpVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNYgRVDIMYGARNPAELlftYQYEEW 184
Cdd:PRK07609  179 fGALKERDILRIEGPLGTFF-LREDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQR-PVTLYWGARRPEDL---YLSALA 253
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 185 RRF-----DINLAITVDQAGP--GWQGPVGLITE-VLKERlgqaGSLaTGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMF 256
Cdd:PRK07609  254 EQWaeelpNFRYVPVVSDALDddAWTGRTGFVHQaVLEDF----PDL-SGHQVYACGSPVMVYAARDDFVAAGLPAEEFF 328
FNR_iron_sulfur_binding_2 cd06216
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
29-251 5.58e-16

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99812 [Multi-domain]  Cd Length: 243  Bit Score: 75.72  E-value: 5.58e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  29 LPAEITSLYALTP-TETLyQIRiidpTARQRFTFQPGQFVMLELPGIG---EAPFSISSSP-VRHGDIELCIRRV--GNL 101
Cdd:cd06216    18 LRARVVAVRPETAdMVTL-TLR----PNRGWPGHRAGQHVRLGVEIDGvrhWRSYSLSSSPtQEDGTITLTVKAQpdGLV 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 102 TNFLARLTR-GARVGLSGPFGThFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRsNYGRVDIMYGARNPAELLFTyq 180
Cdd:cd06216    93 SNWLVNHLApGDVVELSQPQGD-FVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG-PTADVVLLYYARTREDVIFA-- 168
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1276926625 181 yEEWRRFDI---NLAITVDQAGPGWQGpvglitEVLKERLGQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLP 251
Cdd:cd06216   169 -DELRALAAqhpNLRLHLLYTREELDG------RLSAAHLDAVVPDLADRQVYACGPPGFLDAAEELLEAAGLA 235
fre PRK08051
FMN reductase; Validated
28-256 1.00e-15

FMN reductase; Validated


Pssm-ID: 236142 [Multi-domain]  Cd Length: 232  Bit Score: 74.51  E-value: 1.00e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  28 TLPAEITSLYALTPTetLYQIRIIDPTArqrFTFQPGQFVMLELPGIGEAPFSISSSPVRHGDIELCI-RRVGNL--TNF 104
Cdd:PRK08051    2 TLSCKVTSVEAITDT--VYRVRLVPEAP---FSFRAGQYLMVVMGEKDKRPFSIASTPREKGFIELHIgASELNLyaMAV 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 105 LARLTRGARVGLSGPFGTHFPVEEMVgQDILLLAGGLGIVPLRSPLSAVLENRSNygrVDIM--YGARNPAELlftYQYE 182
Cdd:PRK08051   77 MERILKDGEIEVDIPHGDAWLREESE-RPLLLIAGGTGFSYARSILLTALAQGPN---RPITlyWGGREEDHL---YDLD 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 183 EWRRFDI---NLAI--TVDQAGPGWQGPVGLiteVLKERLGQAGSLAtgTCAI-VCGPPVMFRFVCDLLTRA-GLPPQKM 255
Cdd:PRK08051  150 ELEALALkhpNLHFvpVVEQPEEGWQGKTGT---VLTAVMQDFGSLA--EYDIyIAGRFEMAKIARELFCRErGAREEHL 224

                  .
gi 1276926625 256 F 256
Cdd:PRK08051  225 F 225
FNR_iron_sulfur_binding cd06191
Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding ...
55-255 1.28e-15

Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).


Pssm-ID: 99788 [Multi-domain]  Cd Length: 231  Bit Score: 74.49  E-value: 1.28e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  55 ARQRFTFQPGQFVMLELPGIGEA---PFSISSSPVrHGDIELCIRRV--GNLTNFLARLTR-GARVGLSGPFGtHFPVEE 128
Cdd:cd06191    22 GPLQYGFRPGQHVTLKLDFDGEElrrCYSLCSSPA-PDEISITVKRVpgGRVSNYLREHIQpGMTVEVMGPQG-HFVYQP 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 129 MVGQDILLLAGGLGIVPLrspLSAVLENRSNYGRVDI--MYGARNPAELLFTYQYEEWRRFDINLAIT--VDQAGP--GW 202
Cdd:cd06191   100 QPPGRYLLVAAGSGITPL---MAMIRATLQTAPESDFtlIHSARTPADMIFAQELRELADKPQRLRLLciFTRETLdsDL 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1276926625 203 QGPVGLITEVLKERLgqAGSLATGTCaIVCGPPVMFRFVCDLLTRAGLPPQKM 255
Cdd:cd06191   177 LHGRIDGEQSLGAAL--IPDRLEREA-FICGPAGMMDAVETALKELGMPPERI 226
NAD_binding_1 pfam00175
Oxidoreductase NAD-binding domain; Xanthine dehydrogenases, that also bind FAD/NAD, have ...
136-243 2.53e-14

Oxidoreductase NAD-binding domain; Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity.


Pssm-ID: 425503 [Multi-domain]  Cd Length: 109  Bit Score: 67.67  E-value: 2.53e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 136 LLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYGARNPAELLFTYQYEEWR-RFDINLAI--TVDQAGPGWQGPVGLITEV 212
Cdd:pfam00175   1 MIAGGTGIAPVRSMLRAILEDPKDPTQVVLVFGNRNEDDILYREELDELAeKHPGRLTVvyVVSRPEAGWTGGKGRVQDA 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 1276926625 213 LKErlgQAGSLATGTC-AIVCGPPVMFRFVCD 243
Cdd:pfam00175  81 LLE---DHLSLPDEEThVYVCGPPGMIKAVRK 109
FNR_N-term_Iron_sulfur_binding cd06194
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
58-256 4.86e-13

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99791 [Multi-domain]  Cd Length: 222  Bit Score: 66.91  E-value: 4.86e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  58 RFTFQPGQFVMLELPGIGEAPFSISSSPVRHGDIELCIRRV--GNLTNFLARLTR-GARVGLSGPFGTHFPVEEMVGQDI 134
Cdd:cd06194    21 PLPYLPGQYVNLRRAGGLARSYSPTSLPDGDNELEFHIRRKpnGAFSGWLGEEARpGHALRLQGPFGQAFYRPEYGEGPL 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 135 LLLAGGLGIVPLRSPL-SAVLENRSnyGRVDIMYGARNPAELlftYQYEEWRR-------FDINLAITVDQAGPGWQGPV 206
Cdd:cd06194   101 LLVGAGTGLAPLWGIArAALRQGHQ--GEIRLVHGARDPDDL---YLHPALLWlarehpnFRYIPCVSEGSQGDPRVRAG 175
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1276926625 207 glitevlkERLGQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQKMF 256
Cdd:cd06194   176 --------RIAAHLPPLTRDDVVYLCGAPSMVNAVRRRAFLAGAPMKRIY 217
PLN02252 PLN02252
nitrate reductase [NADPH]
99-242 4.41e-12

nitrate reductase [NADPH]


Pssm-ID: 215141 [Multi-domain]  Cd Length: 888  Bit Score: 66.62  E-value: 4.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  99 GNLTNFLARLTRGARVGLSGPFGtHFpveEMVGQ-------------DILLLAGGLGIVPLRSPLSAVLENRSNYGRVDI 165
Cdd:PLN02252  717 GLMSQYLDSLPIGDTIDVKGPLG-HI---EYAGRgsflvngkpkfakKLAMLAGGTGITPMYQVIQAILRDPEDKTEMSL 792
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 166 MYGARNPAELLFTYQYEEWR-----RFDINLAITvDQAGPGWQGPVGLITE-VLKERLGQAGSlatGTCAIVCGPPVMFR 239
Cdd:PLN02252  793 VYANRTEDDILLREELDRWAaehpdRLKVWYVVS-QVKREGWKYSVGRVTEaMLREHLPEGGD---ETLALMCGPPPMIE 868

                  ...
gi 1276926625 240 FVC 242
Cdd:PLN02252  869 FAC 871
PRK12779 PRK12779
putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; ...
62-288 4.62e-12

putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional


Pssm-ID: 183740 [Multi-domain]  Cd Length: 944  Bit Score: 66.39  E-value: 4.62e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  62 QPGQFVMLELPGIGE-APFSISSSPVRHGDIELCIRRVGNLTNFLARLTRG-ARVGLSGPFGTHFPVEEMVG-QDILLLA 138
Cdd:PRK12779  678 QAGQFVRVLPWEKGElIPLTLADWDAEKGTIDLVVQGMGTSSLEINRMAIGdAFSGIAGPLGRASELHRYEGnQTVVFCA 757
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 139 GGLGIVPLRSPLSAVLEnRSNYgrVDIMYGARNpAELLFTYQYEE-----WRRFDINLAITVdQAGPGWQGPVGLITEVL 213
Cdd:PRK12779  758 GGVGLPPVYPIMRAHLR-LGNH--VTLISGFRA-KEFLFWTGDDErvgklKAEFGDQLDVIY-TTNDGSFGVKGFVTGPL 832
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 214 KERL--GQAGSLATGTCAIVCGPPVMFRFVCDLLTRAGLPpqkMFVSLERRMHCGRGKCCRCNIGST--------YTCLD 283
Cdd:PRK12779  833 EEMLkaNQQGKGRTIAEVIAIGPPLMMRAVSDLTKPYGVK---TVASLNSIMVDATGMCGACMVPVTidgkmvrkHACID 909

                  ....*
gi 1276926625 284 GPVFD 288
Cdd:PRK12779  910 GPEID 914
flavohem_like_fad_nad_binding cd06184
FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain ...
31-256 2.74e-11

FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.


Pssm-ID: 99781  Cd Length: 247  Bit Score: 62.19  E-value: 2.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  31 AEITSLYaLTPTETlyqiriiDPTArqrfTFQPGQFVMLELPGIGEAP-----FSISSSPvRHGDIELCIRRVGN--LTN 103
Cdd:cd06184    19 EDITSFY-LEPADG-------GPLP----PFLPGQYLSVRVKLPGLGYrqirqYSLSDAP-NGDYYRISVKREPGglVSN 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 104 FL-ARLTRGARVGLSGPFGtHFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSnyGR-VDIMYGARNPAELLFTYQY 181
Cdd:cd06184    86 YLhDNVKVGDVLEVSAPAG-DFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGP--GRpVTFIHAARNSAVHAFRDEL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 182 EEWRRFDINLAITV--DQAGPGWQGP----VGLIT-EVLKERLgqagsLATGTCAIVCGPPVMFRFVCDLLTRAGLPPQK 254
Cdd:cd06184   163 EELAARLPNLKLHVfySEPEAGDREEdydhAGRIDlALLRELL-----LPADADFYLCGPVPFMQAVREGLKALGVPAER 237

                  ..
gi 1276926625 255 MF 256
Cdd:cd06184   238 IH 239
CYPOR_like_FNR cd06208
These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but ...
79-216 1.37e-10

These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99804 [Multi-domain]  Cd Length: 286  Bit Score: 60.80  E-value: 1.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  79 FSISSSpvRHGD------IELCIRRV------GNLT------NFLARLTRGARVGLSGPFGTHFPVEEMVGQDILLLAGG 140
Cdd:cd06208    67 YSIASS--RYGDdgdgktLSLCVKRLvytdpeTDETkkgvcsNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIATG 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 141 LGIVPLRSPLSAVL----ENRSNYGRVDIMYGARNPAELL-------FTYQYEEwrRFDINLAITVDQAGPgwQGPVGLI 209
Cdd:cd06208   145 TGIAPFRSFLRRLFrekhADYKFTGLAWLFFGVPNSDSLLyddelekYPKQYPD--NFRIDYAFSREQKNA--DGGKMYV 220

                  ....*..
gi 1276926625 210 TEVLKER 216
Cdd:cd06208   221 QDRIAEY 227
NOX_Duox_like_FAD_NADP cd06186
NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as ...
41-241 2.95e-10

NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.


Pssm-ID: 99783 [Multi-domain]  Cd Length: 210  Bit Score: 58.86  E-value: 2.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  41 PTETLYQIRIIDPtarQRFTFQPGQFVMLELPGIG---EA-PFSISSSPVRHGD-IELCIRRVGNLTNFLARLTRGA--- 112
Cdd:cd06186     8 PDSDVIRLTIPKP---KPFKWKPGQHVYLNFPSLLsfwQShPFTIASSPEDEQDtLSLIIRAKKGFTTRLLRKALKSpgg 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 113 ----RVGLSGPFGTHFpveEMVGQD--ILLLAGGLGIVPLRSPLSAVLENRSNYG---RVDIMYGARNPAELL-FTYQYE 182
Cdd:cd06186    85 gvslKVLVEGPYGSSS---EDLLSYdnVLLVAGGSGITFVLPILRDLLRRSSKTSrtrRVKLVWVVRDREDLEwFLDELR 161
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1276926625 183 EWRRFDINLAITVDqagpgwqgpvglITEVlkerlgqagslatgtcaIVCGPPVMFRFV 241
Cdd:cd06186   162 AAQELEVDGEIEIY------------VTRV-----------------VVCGPPGLVDDV 191
PRK12775 PRK12775
putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin ...
62-288 3.88e-10

putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional


Pssm-ID: 183738 [Multi-domain]  Cd Length: 1006  Bit Score: 60.73  E-value: 3.88e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625   62 QPGQFVMLELPGIGE-APFSISSSPVRHGDIELCIRRVGNLT-NFLARLTRG-ARVGLSGPFGTHFPVEEmVGQdILLLA 138
Cdd:PRK12775    29 EPGHFVMLRLYEGAErIPLTVADFDRKKGTITMVVQALGKTTrEMMTKFKAGdTFEDFVGPLGLPQHIDK-AGH-VVLVG 106
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  139 GGLGIVPLRSPLSAVLENRSnygRVDIMYGARNpAELLFtyQYEEWRRFDINLAITVDQagpGWQGPVGLITEVLKERLG 218
Cdd:PRK12775   107 GGLGVAPVYPQLRAFKEAGA---RTTGIIGFRN-KDLVF--WEDKFGKYCDDLIVCTDD---GSYGKPGFVTAALKEVCE 177
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1276926625  219 QAGSlatgTCAIVCGP-PVMfrFVCDLLTRA-GLppqKMFVSLERRMHCGRGKC--CRCNIGS--TYTCLDGPVFD 288
Cdd:PRK12775   178 KDKP----DLVVAIGPlPMM--NACVETTRPfGV---KTMVSLNAIMVDGTGMCgsCRVTVGGevKFACVDGPDFD 244
CYPOR_like cd06182
NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase ...
61-234 2.14e-09

NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99779 [Multi-domain]  Cd Length: 267  Bit Score: 56.96  E-value: 2.14e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  61 FQPGQFVmLELPG--IGEAPFSISSSPVRH-GDIELCIRRV-----------GNLTNFLARLTRGARVGLSGPFGTHFPV 126
Cdd:cd06182    32 YQPGDHL-GVIPPnpLQPRYYSIASSPDVDpGEVHLCVRVVsyeapagrirkGVCSNFLAGLQLGAKVTVFIRPAPSFRL 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 127 EEMVGQDILLLAGGLGIVPLRS---PLSAVLENRSNYGRVDIMYGARNPAElLFTYQyEEWRRF-------DINLAITVD 196
Cdd:cd06182   111 PKDPTTPIIMVGPGTGIAPFRGflqERAALRANGKARGPAWLFFGCRNFAS-DYLYR-EELQEAlkdgaltRLDVAFSRE 188
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1276926625 197 QAGPGwqgpvGLITEVLKE-RLGQAGSLATGTCAIVCGP 234
Cdd:cd06182   189 QAEPK-----VYVQDKLKEhAEELRRLLNEGAHIYVCGD 222
FNR_like_2 cd06197
FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) ...
39-172 8.02e-09

FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).


Pssm-ID: 99794  Cd Length: 220  Bit Score: 54.70  E-value: 8.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  39 LTPTETLYQIRIIDPTARQRFTfqPGQFVML---ELPGIG------EAP----------FSISSSPVRHG---DIELCIR 96
Cdd:cd06197     6 ITPTLTRFTFELSPPDVVGKWT--PGQYITLdfsSELDSGyshmadDDPqslnddfvrtFTVSSAPPHDPatdEFEITVR 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  97 RVGNLTNFL---ARLTRGARV-----GLSGPFGTHFPVEEmVGQDILLLAGGLGIVPLRSPLSAVLENRSNYGRVDIMYG 168
Cdd:cd06197    84 KKGPVTGFLfqvARRLREQGLevpvlGVGGEFTLSLPGEG-AERKMVWIAGGVGITPFLAMLRAILSSRNTTWDITLLWS 162

                  ....
gi 1276926625 169 ARNP 172
Cdd:cd06197   163 LRED 166
antC PRK11872
anthranilate 1,2-dioxygenase electron transfer component AntC;
57-237 5.85e-08

anthranilate 1,2-dioxygenase electron transfer component AntC;


Pssm-ID: 183350 [Multi-domain]  Cd Length: 340  Bit Score: 53.21  E-value: 5.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  57 QRFTFQPGQFVMLELPGIGEA-PFSISSSPVRHGDIELCIRRV--GNLTNFL-ARLTRGARVGLSGPFGTHFPVEemVGQ 132
Cdd:PRK11872  133 RQLDFLPGQYARLQIPGTDDWrSYSFANRPNATNQLQFLIRLLpdGVMSNYLrERCQVGDEILFEAPLGAFYLRE--VER 210
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 133 DILLLAGGLGIVPLRSPLSAVLEnRSNYGRVDIMYGARNPAEL-----LFTYQYeewRRFDINLAITVDQAGPGWQGPVG 207
Cdd:PRK11872  211 PLVFVAGGTGLSAFLGMLDELAE-QGCSPPVHLYYGVRHAADLcelqrLAAYAE---RLPNFRYHPVVSKASADWQGKRG 286
                         170       180       190
                  ....*....|....*....|....*....|
gi 1276926625 208 LITevlkERLGQAGSLATGTCAIVCGPPVM 237
Cdd:PRK11872  287 YIH----EHFDKAQLRDQAFDMYLCGPPPM 312
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
61-256 6.23e-08

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 53.17  E-value: 6.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  61 FQPGQFVMLELPGIGEA--PFSISSSPVRHGDIELCIRRVGN------LTNflaRLTRGARVGLSGPFGtHFPVEEMVGQ 132
Cdd:PRK10684   37 YRAGQYALVSIRNSAETlrAYTLSSTPGVSEFITLTVRRIDDgvgsqwLTR---DVKRGDYLWLSDAMG-EFTCDDKAED 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 133 DILLLAGGLGIVPLRSPLSAVLENRSNyGRVDIMYGARNPAELLFTyqyEEWRRF-----DINLAITVDQ-AGPGWQGpv 206
Cdd:PRK10684  113 KYLLLAAGCGVTPIMSMRRWLLKNRPQ-ADVQVIFNVRTPQDVIFA---DEWRQLkqrypQLNLTLVAENnATEGFIA-- 186
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1276926625 207 GLIT-EVLKErlgQAGSLATGTcAIVCGPPVMFRFVCDLLTRAGLPPQKMF 256
Cdd:PRK10684  187 GRLTrELLQQ---AVPDLASRT-VMTCGPAPYMDWVEQEVKALGVTADRFF 233
PTZ00319 PTZ00319
NADH-cytochrome B5 reductase; Provisional
99-256 1.78e-07

NADH-cytochrome B5 reductase; Provisional


Pssm-ID: 173521 [Multi-domain]  Cd Length: 300  Bit Score: 51.76  E-value: 1.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  99 GNLTNFLARLTRGARVGLSGPFG-----------THFPVEEMVGQDI---LLLAGGLGIVPLRSPLSAVLENRSNYGRVD 164
Cdd:PTZ00319  120 GRLSQHLYHMKLGDKIEMRGPVGkfeylgngtytVHKGKGGLKTMHVdafAMIAGGTGITPMLQIIHAIKKNKEDRTKVF 199
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 165 IMYGARNPAELLFTYQYEEWR---RFDINLAITvDQAGPGWQGPVGLITE-VLKERLGQAGSLATG---TCAIVCGPPVM 237
Cdd:PTZ00319  200 LVYANQTEDDILLRKELDEAAkdpRFHVWYTLD-REATPEWKYGTGYVDEeMLRAHLPVPDPQNSGikkVMALMCGPPPM 278
                         170       180
                  ....*....|....*....|
gi 1276926625 238 FRFVCDL-LTRAGLPPQKMF 256
Cdd:PTZ00319  279 LQMAVKPnLEKIGYTADNMF 298
FAD_binding_6 pfam00970
Oxidoreductase FAD-binding domain;
53-122 2.02e-06

Oxidoreductase FAD-binding domain;


Pssm-ID: 425968 [Multi-domain]  Cd Length: 99  Bit Score: 45.26  E-value: 2.02e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1276926625  53 PTARQRFTFQPGQFVMLELPGIGEA---PFSISSSPVRHGDIELCIRRV--GNLTNFLARLTRGARVGLSGPFGT 122
Cdd:pfam00970  22 PHPDQVLGLPVGQHLFLRLPIDGELvirSYTPISSDDDKGYLELLVKVYpgGKMSQYLDELKIGDTIDFKGPLGR 96
PLN03115 PLN03115
ferredoxin--NADP(+) reductase; Provisional
79-198 3.76e-06

ferredoxin--NADP(+) reductase; Provisional


Pssm-ID: 215585 [Multi-domain]  Cd Length: 367  Bit Score: 47.69  E-value: 3.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  79 FSISSSPVrhGD------IELCIRRV-----------GNLTNFLARLTRGARVGLSGPFGTHFPVEEMVGQDILLLAGGL 141
Cdd:PLN03115  148 YSIASSAL--GDfgdsktVSLCVKRLvytndqgeivkGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGT 225
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1276926625 142 GIVPLRSPL-SAVLENRSNY---GRVDIMYGARNPAELLFTYQYEEWRR-----FDINLAITVDQA 198
Cdd:PLN03115  226 GIAPFRSFLwKMFFEKHDDYkfnGLAWLFLGVPTSSSLLYKEEFEKMKEkapenFRLDFAVSREQT 291
FNR_like_1 cd06196
Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain ...
59-252 1.73e-05

Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.


Pssm-ID: 99793 [Multi-domain]  Cd Length: 218  Bit Score: 44.92  E-value: 1.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  59 FTFQPGQF--VMLELPGIGE--APFSISSSPvRHGDIELCIRRV---GNLTNFLARLTRGARVGLSGPFGTHFPVEEMVg 131
Cdd:cd06196    26 YDFTPGQAteVAIDKPGWRDekRPFTFTSLP-EDDVLEFVIKSYpdhDGVTEQLGRLQPGDTLLIEDPWGAIEYKGPGV- 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 132 qdilLLAGGLGIvplrSPLSAVLENRSNYGRVD---IMYGARNPAELLFTyqyEEWRRFDINLAITV--DQAGPGWQGpv 206
Cdd:cd06196   104 ----FIAGGAGI----TPFIAILRDLAAKGKLEgntLIFANKTEKDIILK---DELEKMLGLKFINVvtDEKDPGYAH-- 170
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1276926625 207 GLITevlKERLGQAGSLATGTCaIVCGPPVMFRFVCDLLTRAGLPP 252
Cdd:cd06196   171 GRID---KAFLKQHVTDFNQHF-YVCGPPPMEEAINGALKELGVPE 212
DHODB_Fe-S_bind pfam10418
Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Lactococcus lactis is ...
260-292 6.44e-05

Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Lactococcus lactis is one of the few organizms with two dihydroorotate dehydrogenases, DHODs, A and B. The B enzyme is a prototype for DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a hetero-tetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulfur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulfur cluster. The conformation of the whole molecule means that the iron-sulfur cluster is localized in a well-ordered part of this domain close to the FAD binding site. The FAD and and NAD binding domains are FAD_binding_6, pfam00970 and NAD_binding_1, pfam00175.


Pssm-ID: 463084 [Multi-domain]  Cd Length: 40  Bit Score: 39.51  E-value: 6.44e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1276926625 260 ERRMHCGRGKC--CRC-----NIGSTYTCLDGPVFDYWSV 292
Cdd:pfam10418   1 EERMACGVGACggCVVktkggDGEYKRVCVDGPVFDADEV 40
PLN02844 PLN02844
oxidoreductase/ferric-chelate reductase
52-197 1.79e-04

oxidoreductase/ferric-chelate reductase


Pssm-ID: 215453 [Multi-domain]  Cd Length: 722  Bit Score: 42.91  E-value: 1.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  52 DPtarqRFTFQPGQFVMLELPGIGE---APFSI-SSSPVRHGDIELCIRRVGNLTNFL-----ARLTRGAR------VGL 116
Cdd:PLN02844  334 DP----GLKYAPTSVIFMKIPSISRfqwHPFSItSSSNIDDHTMSVIIKCEGGWTNSLynkiqAELDSETNqmncipVAI 409
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 117 SGPFGTHfPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENRSNY----GRVDIMYGAR--------NP-AELLFTYQYEE 183
Cdd:PLN02844  410 EGPYGPA-SVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRyrfpKRVQLIYVVKksqdicllNPiSSLLLNQSSNQ 488
                         170
                  ....*....|....
gi 1276926625 184 WRrfdINLAITVDQ 197
Cdd:PLN02844  489 LN---LKLKVFVTQ 499
PLN03116 PLN03116
ferredoxin--NADP+ reductase; Provisional
79-197 1.89e-04

ferredoxin--NADP+ reductase; Provisional


Pssm-ID: 215586 [Multi-domain]  Cd Length: 307  Bit Score: 42.39  E-value: 1.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  79 FSISSSpvRHGD------IELCIRRV---------------GNLTNFLARLTRGARVGLSGPFG-THFPVEEMVGQDILL 136
Cdd:PLN03116   84 YSIAST--RYGDdfdgktASLCVRRAvyydpetgkedpakkGVCSNFLCDAKPGDKVQITGPSGkVMLLPEEDPNATHIM 161
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625 137 LAGGLGIVPLRSPLSAV-LENRSNY---GRVDIMYGARNPAELLFTYQYEEWRR-----FDINLAITVDQ 197
Cdd:PLN03116  162 VATGTGIAPFRGFLRRMfMEDVPAFkfgGLAWLFLGVANSDSLLYDDEFERYLKdypdnFRYDYALSREQ 231
PTZ00306 PTZ00306
NADH-dependent fumarate reductase; Provisional
53-246 2.94e-04

NADH-dependent fumarate reductase; Provisional


Pssm-ID: 140327 [Multi-domain]  Cd Length: 1167  Bit Score: 42.46  E-value: 2.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625   53 PTARQRFTFQPGQFVML--ELPG---IGEapFSISSSPVRHGDIELCIRR-VGNLTNFLARLTRGARVGLSG-------- 118
Cdd:PTZ00306   940 PGALQRSGLTLGQFIAIrgDWDGqqlIGY--YSPITLPDDLGVISILARGdKGTLKEWISALRPGDSVEMKAcgglrier 1017
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  119 -PFGTHFPVEEMVGQDILLLAGGLGIVPLRSPLSAVLENR--SNYGRVDIMYGARNPAEL-----LFTYQYEEWRRFDIN 190
Cdd:PTZ00306  1018 rPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPyvDSIESIRLIYAAEDVSELtyrelLESYRKENPGKFKCH 1097
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1276926625  191 LAItvDQAGPGWQGPVGLITEVLKERLGQAGSlaTGTCAIVCGPPVMFRFV-CDLLT 246
Cdd:PTZ00306  1098 FVL--NNPPEGWTDGVGFVDRALLQSALQPPS--KDLLVAICGPPVMQRAVkADLLA 1150
CyPoR_like cd06207
NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase ...
79-194 3.88e-03

NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99803 [Multi-domain]  Cd Length: 382  Bit Score: 38.41  E-value: 3.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276926625  79 FSISSSPVRH-GDIELCI-----------RRVGNLTNFLARLTRGARVglsgPFGTHFPVEEMVGQD---ILLLAGGLGI 143
Cdd:cd06207   167 YSISSSPLKNpNEVHLLVslvswktpsgrSRYGLCSSYLAGLKVGQRV----TVFIKKSSFKLPKDPkkpIIMVGPGTGL 242
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1276926625 144 VPLRsplsAVLENRSNY-------GRVDIMYGARNPAElLFTYQyEEWRRFDINLAIT 194
Cdd:cd06207   243 APFR----AFLQERAALlaqgpeiGPVLLYFGCRHEDK-DYLYK-EELEEYEKSGVLT 294
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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