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Conserved domains on  [gi|1276687449|gb|ATV43197|]
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DUF1738 domain-containing protein [Pectobacterium brasiliense]

Protein Classification

ArdC family protein( domain architecture ID 11468014)

ArdC family protein is a DUF1738 domain-containing protein; similar to antirestriction protein ArdC

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ArdC COG4227
Antirestriction protein ArdC [Replication, recombination and repair];
34-313 2.38e-156

Antirestriction protein ArdC [Replication, recombination and repair];


:

Pssm-ID: 443371 [Multi-domain]  Cd Length: 303  Bit Score: 438.90  E-value: 2.38e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449  34 SKTKTDIYQTVTDSIITALEAGVKPWTCPWQRVPGMSGLPSNFATGIAYSGMNIMLLWCSASEQGFGDPRWMTYRQAQAV 113
Cdd:COG4227     4 AKPRKDIYQEVTDRIIAALEAGTLPWRKPWNSSGAGLGLPLNAATGRPYRGINVLLLWMAAEERGYTSPRWLTFKQAKEL 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449 114 GGQVRKGEHGTTAIFYTTLEKENEDGEIDQ-------IPMLKTFNVFNVQQIDGLPLT-TETVSPEATFDPLPEAENLFQ 185
Cdd:COG4227    84 GGQVRKGEKGTLVVYYKRFEKEDEDEEDEEgeeverrIPFLKAYTVFNAEQIDGLPEEyYPLPEPLPESERIERAEAFIA 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449 186 KSGANIIEKGQNAFFRPSTDEVWLPERHLFSDAANFYATGLHELVHWSGDKKRLNREMKGNFGSADYAEEELVAELGSAF 265
Cdd:COG4227   164 ATGADIRHGGDRAFYSPSTDRIQMPPREQFKDAEDYYATLLHELGHWTGHKSRLNRDLGGRFGSEAYAFEELVAELGSAF 243
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1276687449 266 LMADLGIIGEV--QHESYIASWLQALKNDKRYVFKAASTASKAHRYLMDK 313
Cdd:COG4227   244 LCAELGIAPEPreNHAAYIASWLKVLKEDKRAIFRAASKAQKAADYLLGL 293
 
Name Accession Description Interval E-value
ArdC COG4227
Antirestriction protein ArdC [Replication, recombination and repair];
34-313 2.38e-156

Antirestriction protein ArdC [Replication, recombination and repair];


Pssm-ID: 443371 [Multi-domain]  Cd Length: 303  Bit Score: 438.90  E-value: 2.38e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449  34 SKTKTDIYQTVTDSIITALEAGVKPWTCPWQRVPGMSGLPSNFATGIAYSGMNIMLLWCSASEQGFGDPRWMTYRQAQAV 113
Cdd:COG4227     4 AKPRKDIYQEVTDRIIAALEAGTLPWRKPWNSSGAGLGLPLNAATGRPYRGINVLLLWMAAEERGYTSPRWLTFKQAKEL 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449 114 GGQVRKGEHGTTAIFYTTLEKENEDGEIDQ-------IPMLKTFNVFNVQQIDGLPLT-TETVSPEATFDPLPEAENLFQ 185
Cdd:COG4227    84 GGQVRKGEKGTLVVYYKRFEKEDEDEEDEEgeeverrIPFLKAYTVFNAEQIDGLPEEyYPLPEPLPESERIERAEAFIA 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449 186 KSGANIIEKGQNAFFRPSTDEVWLPERHLFSDAANFYATGLHELVHWSGDKKRLNREMKGNFGSADYAEEELVAELGSAF 265
Cdd:COG4227   164 ATGADIRHGGDRAFYSPSTDRIQMPPREQFKDAEDYYATLLHELGHWTGHKSRLNRDLGGRFGSEAYAFEELVAELGSAF 243
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1276687449 266 LMADLGIIGEV--QHESYIASWLQALKNDKRYVFKAASTASKAHRYLMDK 313
Cdd:COG4227   244 LCAELGIAPEPreNHAAYIASWLKVLKEDKRAIFRAASKAQKAADYLLGL 293
MPTase-PolyVal pfam18818
Zincin-like metallopeptidase; Zincin-like Metallopeptidase frequently found in polyvalent ...
178-301 2.45e-67

Zincin-like metallopeptidase; Zincin-like Metallopeptidase frequently found in polyvalent proteins of phages and conjugative elements. The active site is comprised of a HEXXH motif and a C-terminal glutamate.


Pssm-ID: 465878  Cd Length: 126  Bit Score: 206.56  E-value: 2.45e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449 178 PEAENLFQKSGANIIEKGQNAFFRPSTDEVWLPERHLFSDAANFYATGLHELVHWSGDKKRLNREMKGNFGSADYAEEEL 257
Cdd:pfam18818   1 ERAEAFFAATGADIRHGGDRAFYSPSTDHIQMPPFEAFRDAENYYATLLHELGHWTGHESRLDRDLSGRFGSEAYAREEL 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1276687449 258 VAELGSAFLMADLGIIGEV-QHESYIASWLQALKNDKRYVFKAAS 301
Cdd:pfam18818  81 VAELGSAFLCADLGIVPEPrDHAAYIASWLKVLKDDKRAIFRAAS 125
 
Name Accession Description Interval E-value
ArdC COG4227
Antirestriction protein ArdC [Replication, recombination and repair];
34-313 2.38e-156

Antirestriction protein ArdC [Replication, recombination and repair];


Pssm-ID: 443371 [Multi-domain]  Cd Length: 303  Bit Score: 438.90  E-value: 2.38e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449  34 SKTKTDIYQTVTDSIITALEAGVKPWTCPWQRVPGMSGLPSNFATGIAYSGMNIMLLWCSASEQGFGDPRWMTYRQAQAV 113
Cdd:COG4227     4 AKPRKDIYQEVTDRIIAALEAGTLPWRKPWNSSGAGLGLPLNAATGRPYRGINVLLLWMAAEERGYTSPRWLTFKQAKEL 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449 114 GGQVRKGEHGTTAIFYTTLEKENEDGEIDQ-------IPMLKTFNVFNVQQIDGLPLT-TETVSPEATFDPLPEAENLFQ 185
Cdd:COG4227    84 GGQVRKGEKGTLVVYYKRFEKEDEDEEDEEgeeverrIPFLKAYTVFNAEQIDGLPEEyYPLPEPLPESERIERAEAFIA 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449 186 KSGANIIEKGQNAFFRPSTDEVWLPERHLFSDAANFYATGLHELVHWSGDKKRLNREMKGNFGSADYAEEELVAELGSAF 265
Cdd:COG4227   164 ATGADIRHGGDRAFYSPSTDRIQMPPREQFKDAEDYYATLLHELGHWTGHKSRLNRDLGGRFGSEAYAFEELVAELGSAF 243
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1276687449 266 LMADLGIIGEV--QHESYIASWLQALKNDKRYVFKAASTASKAHRYLMDK 313
Cdd:COG4227   244 LCAELGIAPEPreNHAAYIASWLKVLKEDKRAIFRAASKAQKAADYLLGL 293
MPTase-PolyVal pfam18818
Zincin-like metallopeptidase; Zincin-like Metallopeptidase frequently found in polyvalent ...
178-301 2.45e-67

Zincin-like metallopeptidase; Zincin-like Metallopeptidase frequently found in polyvalent proteins of phages and conjugative elements. The active site is comprised of a HEXXH motif and a C-terminal glutamate.


Pssm-ID: 465878  Cd Length: 126  Bit Score: 206.56  E-value: 2.45e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449 178 PEAENLFQKSGANIIEKGQNAFFRPSTDEVWLPERHLFSDAANFYATGLHELVHWSGDKKRLNREMKGNFGSADYAEEEL 257
Cdd:pfam18818   1 ERAEAFFAATGADIRHGGDRAFYSPSTDHIQMPPFEAFRDAENYYATLLHELGHWTGHESRLDRDLSGRFGSEAYAREEL 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1276687449 258 VAELGSAFLMADLGIIGEV-QHESYIASWLQALKNDKRYVFKAAS 301
Cdd:pfam18818  81 VAELGSAFLCADLGIVPEPrDHAAYIASWLKVLKDDKRAIFRAAS 125
ArdcN pfam08401
N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of ...
38-153 1.80e-50

N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of anti-restriction factor ArdC deployed by plasmids and phages in polyvalent proteins related to the BHD domains of XPC/Rad4 and the Tc-38 domain found in kinetoplastid minicircle binding proteins. The structure of this domain is composed of three alpha-helices and a three-stranded beta-sheet that supports a long and protuberant beta-hairpin. This domain is also found in the N-terminal region of the RP4 TraC1 primase, together with the Toprim domain (pfam01751, pfam13362 and pfam13662).


Pssm-ID: 429975  Cd Length: 127  Bit Score: 163.28  E-value: 1.80e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276687449  38 TDIYQTVTDSIITALEAGVKPWTCPWQRVPGmSGLPSNFATGIAYSGMNIMLLWCSASEQGFGDPRWMTYRQAQAVGGQV 117
Cdd:pfam08401   1 KDLYERITDQIIEALEAGVGPWQKPWSTGGA-GGLPRNAATGRPYSGINVLLLWLAAPEAGYTSPRWLTFKQAKELGGQV 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1276687449 118 RKGEHGTTAIFYTTLEKENEDGEIDQ------------IPMLKTFNVF 153
Cdd:pfam08401  80 RKGEKGTPVVYYKFFVKEDEDDKDYKeadeegeeeereIPFLKTYTVF 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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