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Conserved domains on  [gi|1276680106|gb|ATV41658|]
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hypothetical protein CUC00_11155 [Prevotella intermedia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TssO super family cl38827
Type VI secretion system, TssO; T6SSs are toxin delivery systems. It is a multiprotein complex ...
 1-145 2.43e-22

Type VI secretion system, TssO; T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. TssO proteins have one predicted TM region near their N-termini. In Flavobacterium johnsoniae, three specific components (TssN, TssO and TssP) are absent in the other sub-types of T6SS.


The actual alignment was detected with superfamily member pfam17561:

Pssm-ID: 435935 [Multi-domain]  Cd Length: 148  Bit Score: 86.53  E-value: 2.43e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276680106   1 MTRDEKLWSTIKFTLLLSFSVILLFILLCKYVTPIPVSVTGNVVKEINDAEAILNDQRQMAEQMNVLKKDIDSLNFEIQQ 80
Cdd:pfam17561   1 LNIKERRSQFLYFLLLFLVTTGLLGFILFFFYKSSPLFENELLIKKLERIKEFENFQKEFSPKVDTIYKKIDSLDPGVNA 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1276680106  81 SQRINEIKHRMTQLQDNYRKHAYNPKYLYCMQSFKTIQGYFEIKEKLYWTTKNKEDRERRVELYK 145
Cdd:pfam17561  81 VFLENDIKYLLNDIKSSYPRNSWDPRYKMYDQIATFYNMLLEDKKELWSKSKNIELFKKDLEECE 145
 
Name Accession Description Interval E-value
TssO pfam17561
Type VI secretion system, TssO; T6SSs are toxin delivery systems. It is a multiprotein complex ...
 1-145 2.43e-22

Type VI secretion system, TssO; T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. TssO proteins have one predicted TM region near their N-termini. In Flavobacterium johnsoniae, three specific components (TssN, TssO and TssP) are absent in the other sub-types of T6SS.


Pssm-ID: 435935 [Multi-domain]  Cd Length: 148  Bit Score: 86.53  E-value: 2.43e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276680106   1 MTRDEKLWSTIKFTLLLSFSVILLFILLCKYVTPIPVSVTGNVVKEINDAEAILNDQRQMAEQMNVLKKDIDSLNFEIQQ 80
Cdd:pfam17561   1 LNIKERRSQFLYFLLLFLVTTGLLGFILFFFYKSSPLFENELLIKKLERIKEFENFQKEFSPKVDTIYKKIDSLDPGVNA 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1276680106  81 SQRINEIKHRMTQLQDNYRKHAYNPKYLYCMQSFKTIQGYFEIKEKLYWTTKNKEDRERRVELYK 145
Cdd:pfam17561  81 VFLENDIKYLLNDIKSSYPRNSWDPRYKMYDQIATFYNMLLEDKKELWSKSKNIELFKKDLEECE 145
 
Name Accession Description Interval E-value
TssO pfam17561
Type VI secretion system, TssO; T6SSs are toxin delivery systems. It is a multiprotein complex ...
 1-145 2.43e-22

Type VI secretion system, TssO; T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. TssO proteins have one predicted TM region near their N-termini. In Flavobacterium johnsoniae, three specific components (TssN, TssO and TssP) are absent in the other sub-types of T6SS.


Pssm-ID: 435935 [Multi-domain]  Cd Length: 148  Bit Score: 86.53  E-value: 2.43e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276680106   1 MTRDEKLWSTIKFTLLLSFSVILLFILLCKYVTPIPVSVTGNVVKEINDAEAILNDQRQMAEQMNVLKKDIDSLNFEIQQ 80
Cdd:pfam17561   1 LNIKERRSQFLYFLLLFLVTTGLLGFILFFFYKSSPLFENELLIKKLERIKEFENFQKEFSPKVDTIYKKIDSLDPGVNA 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1276680106  81 SQRINEIKHRMTQLQDNYRKHAYNPKYLYCMQSFKTIQGYFEIKEKLYWTTKNKEDRERRVELYK 145
Cdd:pfam17561  81 VFLENDIKYLLNDIKSSYPRNSWDPRYKMYDQIATFYNMLLEDKKELWSKSKNIELFKKDLEECE 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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