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Conserved domains on  [gi|1276672267|gb|ATV33825|]
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nucleoside deaminase [Prevotella intermedia]

Protein Classification

nucleoside deaminase( domain architecture ID 10001752)

nucleoside deaminase such as adenosine, guanine, or cytosine deaminase is a Zn-dependent enzyme which catalyzes the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer

EC:  3.5.4.-
Gene Ontology:  GO:0008270|GO:0019239|GO:0009116
PubMed:  38524700
SCOP:  3001838

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TadA COG0590
tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]; tRNA ...
 1-144 2.73e-63

tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]; tRNA(Arg) A34 adenosine deaminase TadA is part of the Pathway/BioSystem: Pyrimidine salvagetRNA modification


:

Pssm-ID: 440355 [Multi-domain]  Cd Length: 148  Bit Score: 190.71  E-value: 2.73e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   1 MTNEELMRRAIELSENSVRNGGGPFGAVIAKDGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQKLGTFDLSGCVIYTSCE 80
Cdd:COG0590     2 EDDEEFMRRALELARKAVAEGEVPVGAVLVKDGEIIARGHNRVETLNDPTAHAEILAIRAAARKLGNWRLSGCTLYVTLE 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1276672267  81 PCPMCFGAIYWAHLDKIYYANDRKDAGKIGfdddFIYKEIALEPQYRK-KPSEILLRNEAINAFK 144
Cdd:COG0590    82 PCPMCAGAIVWARIGRVVYGASDPKAGAAG----SIYDLLADPRLNHRvEVVGGVLAEECAALLR 142
 
Name Accession Description Interval E-value
TadA COG0590
tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]; tRNA ...
 1-144 2.73e-63

tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]; tRNA(Arg) A34 adenosine deaminase TadA is part of the Pathway/BioSystem: Pyrimidine salvagetRNA modification


Pssm-ID: 440355 [Multi-domain]  Cd Length: 148  Bit Score: 190.71  E-value: 2.73e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   1 MTNEELMRRAIELSENSVRNGGGPFGAVIAKDGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQKLGTFDLSGCVIYTSCE 80
Cdd:COG0590     2 EDDEEFMRRALELARKAVAEGEVPVGAVLVKDGEIIARGHNRVETLNDPTAHAEILAIRAAARKLGNWRLSGCTLYVTLE 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1276672267  81 PCPMCFGAIYWAHLDKIYYANDRKDAGKIGfdddFIYKEIALEPQYRK-KPSEILLRNEAINAFK 144
Cdd:COG0590    82 PCPMCAGAIVWARIGRVVYGASDPKAGAAG----SIYDLLADPRLNHRvEVVGGVLAEECAALLR 142
nucleoside_deaminase cd01285
Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn ...
 7-114 2.53e-50

Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.


Pssm-ID: 238612 [Multi-domain]  Cd Length: 109  Bit Score: 156.62  E-value: 2.53e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   7 MRRAIELSENSVRNGGGPFGAVIA-KDGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQKLGTFDLSGCVIYTSCEPCPMC 85
Cdd:cd01285     1 MRLAIELARKALAEGEVPFGAVIVdDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPCPMC 80

                          90       100
                  ....*....|....*....|....*....
gi 1276672267  86 FGAIYWAHLDKIYYANDRKDAGKIGFDDD 114
Cdd:cd01285    81 AGALLWARIKRVVYGASDPKLGGIGFLIE 109
dCMP_cyt_deam_1 pfam00383
Cytidine and deoxycytidylate deaminase zinc-binding region;
4-100 5.28e-32

Cytidine and deoxycytidylate deaminase zinc-binding region;


Pssm-ID: 395307 [Multi-domain]  Cd Length: 100  Bit Score: 109.70  E-value: 5.28e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   4 EELMRRAIELSENSVRNGGGPFGAVIAK-DGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQKLGTFDLSGCVIYTSCEPC 82
Cdd:pfam00383   3 EYFMRLALKAAKRAYPYSNFPVGAVIVKkDGEIIATGYNGENAGYDPTIHAERNAIRQAGKRGEGVRLEGATLYVTLEPC 82

                          90
                  ....*....|....*...
gi 1276672267  83 PMCFGAIYWAHLDKIYYA 100
Cdd:pfam00383  83 GMCAQAIIESGIKRVVFG 100
PRK10860 PRK10860
tRNA-specific adenosine deaminase; Provisional
 3-104 2.94e-20

tRNA-specific adenosine deaminase; Provisional


Pssm-ID: 182786 [Multi-domain]  Cd Length: 172  Bit Score: 81.78  E-value: 2.94e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   3 NEELMRRAIELSENSVRNGGGPFGAVIAKDGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQKLGTFDLSGCVIYTSCEPC 82
Cdd:PRK10860   13 HEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEPC 92

                          90       100
                  ....*....|....*....|...
gi 1276672267  83 PMCFGAIYWAHLDKIYY-ANDRK 104
Cdd:PRK10860   93 VMCAGAMVHSRIGRLVFgARDAK 115
eubact_ribD TIGR00326
riboflavin biosynthesis protein RibD; This model describes the ribD protein as found in ...
 7-109 1.03e-05

riboflavin biosynthesis protein RibD; This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]


Pssm-ID: 273015 [Multi-domain]  Cd Length: 344  Bit Score: 44.05  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   7 MRRAIELSENsvrnGGG------PFGAVIAKDGEIVAEGSNKvtidNDPTAHAEVCTIRNACQKlgtfdLSGCVIYTSCE 80
Cdd:TIGR00326   1 MNRALDLAKK----GQGtthpnpLVGCVIVKNGEIVGEGAHQ----KAGEPHAEVHALRQAGEN-----AKGATAYVTLE 67

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1276672267  81 PC------PMCFGAIYWAHLDKIYYAndRKDAGKI 109
Cdd:TIGR00326  68 PCshqgrtPPCAEAIIEAGIKKVVVS--MQDPNPL 100
 
Name Accession Description Interval E-value
TadA COG0590
tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]; tRNA ...
 1-144 2.73e-63

tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]; tRNA(Arg) A34 adenosine deaminase TadA is part of the Pathway/BioSystem: Pyrimidine salvagetRNA modification


Pssm-ID: 440355 [Multi-domain]  Cd Length: 148  Bit Score: 190.71  E-value: 2.73e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   1 MTNEELMRRAIELSENSVRNGGGPFGAVIAKDGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQKLGTFDLSGCVIYTSCE 80
Cdd:COG0590     2 EDDEEFMRRALELARKAVAEGEVPVGAVLVKDGEIIARGHNRVETLNDPTAHAEILAIRAAARKLGNWRLSGCTLYVTLE 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1276672267  81 PCPMCFGAIYWAHLDKIYYANDRKDAGKIGfdddFIYKEIALEPQYRK-KPSEILLRNEAINAFK 144
Cdd:COG0590    82 PCPMCAGAIVWARIGRVVYGASDPKAGAAG----SIYDLLADPRLNHRvEVVGGVLAEECAALLR 142
nucleoside_deaminase cd01285
Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn ...
 7-114 2.53e-50

Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.


Pssm-ID: 238612 [Multi-domain]  Cd Length: 109  Bit Score: 156.62  E-value: 2.53e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   7 MRRAIELSENSVRNGGGPFGAVIA-KDGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQKLGTFDLSGCVIYTSCEPCPMC 85
Cdd:cd01285     1 MRLAIELARKALAEGEVPFGAVIVdDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPCPMC 80

                          90       100
                  ....*....|....*....|....*....
gi 1276672267  86 FGAIYWAHLDKIYYANDRKDAGKIGFDDD 114
Cdd:cd01285    81 AGALLWARIKRVVYGASDPKLGGIGFLIE 109
dCMP_cyt_deam_1 pfam00383
Cytidine and deoxycytidylate deaminase zinc-binding region;
4-100 5.28e-32

Cytidine and deoxycytidylate deaminase zinc-binding region;


Pssm-ID: 395307 [Multi-domain]  Cd Length: 100  Bit Score: 109.70  E-value: 5.28e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   4 EELMRRAIELSENSVRNGGGPFGAVIAK-DGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQKLGTFDLSGCVIYTSCEPC 82
Cdd:pfam00383   3 EYFMRLALKAAKRAYPYSNFPVGAVIVKkDGEIIATGYNGENAGYDPTIHAERNAIRQAGKRGEGVRLEGATLYVTLEPC 82

                          90
                  ....*....|....*...
gi 1276672267  83 PMCFGAIYWAHLDKIYYA 100
Cdd:pfam00383  83 GMCAQAIIESGIKRVVFG 100
MafB19-deam pfam14437
MafB19-like deaminase; A member of the nucleic acid/nucleotide deaminase superfamily ...
 1-110 1.92e-26

MafB19-like deaminase; A member of the nucleic acid/nucleotide deaminase superfamily prototyped by Neisseria MafB19. Members of this family are present in a wide phyletic range of bacteria and are predicted to function as toxins in bacterial polymorphic toxin systems.


Pssm-ID: 433953 [Multi-domain]  Cd Length: 144  Bit Score: 97.21  E-value: 1.92e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   1 MTNEELMRRAIELSENSVRNGGGPFGAVIAKDGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQKLGTFDLSGCVIYTSCE 80
Cdd:pfam14437   1 ENHEKWFRKALGLAEKAYDAGEVPIGAVIVKDGKVIARGYNRKELNADTTAHAEILAIQQAAKKLGSWRLDDATLYVTLE 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1276672267  81 PCPMCFGAIYWAHLDKIYYANDRKDAGKIG 110
Cdd:pfam14437  81 PCPMCAGAIVQAGLKSLVYGAGNPKGGAVG 110
PRK10860 PRK10860
tRNA-specific adenosine deaminase; Provisional
 3-104 2.94e-20

tRNA-specific adenosine deaminase; Provisional


Pssm-ID: 182786 [Multi-domain]  Cd Length: 172  Bit Score: 81.78  E-value: 2.94e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   3 NEELMRRAIELSENSVRNGGGPFGAVIAKDGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQKLGTFDLSGCVIYTSCEPC 82
Cdd:PRK10860   13 HEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEPC 92

                          90       100
                  ....*....|....*....|...
gi 1276672267  83 PMCFGAIYWAHLDKIYY-ANDRK 104
Cdd:PRK10860   93 VMCAGAMVHSRIGRLVFgARDAK 115
Riboflavin_deaminase-reductase cd01284
Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD ...
 7-100 1.36e-11

Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.


Pssm-ID: 238611 [Multi-domain]  Cd Length: 115  Bit Score: 58.01  E-value: 1.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   7 MRRAIELSENsvrnGGG------PFGAVIAKD-GEIVAEGSNKVTidndPTAHAEVCTIRNACQKLgtfdLSGCVIYTSC 79
Cdd:cd01284     1 MRRALELAEK----GRGltspnpPVGCVIVDDdGEIVGEGYHRKA----GGPHAEVNALASAGEKL----ARGATLYVTL 68

                          90       100
                  ....*....|....*....|....*..
gi 1276672267  80 EPC------PMCFGAIYWAHLDKIYYA 100
Cdd:cd01284    69 EPCshhgktPPCVDAIIEAGIKRVVVG 95
ComEB COG2131
Deoxycytidylate deaminase [Nucleotide transport and metabolism];
26-105 1.48e-08

Deoxycytidylate deaminase [Nucleotide transport and metabolism];


Pssm-ID: 441734 [Multi-domain]  Cd Length: 154  Bit Score: 50.61  E-value: 1.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267  26 GAVIAKDGEIVAEGSN-----------------KVTIDNDP------TAHAEVctirNA---CQKLGTfDLSGCVIYTSC 79
Cdd:COG2131    31 GAVIVKDKRILATGYNgapsglphcdevgclreKLGIPSGErgeccrTVHAEQ----NAilqAARHGV-STEGATLYVTH 105

                          90       100
                  ....*....|....*....|....*.
gi 1276672267  80 EPCPMCFGAIYWAHLDKIYYANDRKD 105
Cdd:COG2131   106 FPCLECAKMIIQAGIKRVVYLEDYPD 131
deoxycytidylate_deaminase cd01286
Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP ...
 26-112 9.05e-08

Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.


Pssm-ID: 238613 [Multi-domain]  Cd Length: 131  Bit Score: 48.04  E-value: 9.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267  26 GAVIAKDGEIVAEGSN----KVTIDNDP-----------------TAHAEVCTIRNACqKLGTfDLSGCVIYTSCEPCPM 84
Cdd:cd01286    23 GAVIVKDKRIISTGYNgspsGLPHCAEVgcerddlpsgedqkccrTVHAEQNAILQAA-RHGV-SLEGATLYVTLFPCIE 100

                          90       100
                  ....*....|....*....|....*...
gi 1276672267  85 CFGAIYWAHLDKIYYANDRKDAGKIGFD 112
Cdd:cd01286   101 CAKLIIQAGIKKVVYAEPYDDDDPAAAE 128
cytidine_deaminase-like cd00786
Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine ...
 21-89 8.54e-06

Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.


Pssm-ID: 238406 [Multi-domain]  Cd Length: 96  Bit Score: 42.15  E-value: 8.54e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1276672267  21 GGGPFGAVI--AKDGEIVAEGSNKVTIDNDPTAHAEVCTIRNACQklgTFDLSGCVIYTSCEPCPMCFGAI 89
Cdd:cd00786    16 SNFQVGACLvnKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGS---EGDTKGQMLYVALSPCGACAQLI 83
eubact_ribD TIGR00326
riboflavin biosynthesis protein RibD; This model describes the ribD protein as found in ...
 7-109 1.03e-05

riboflavin biosynthesis protein RibD; This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]


Pssm-ID: 273015 [Multi-domain]  Cd Length: 344  Bit Score: 44.05  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   7 MRRAIELSENsvrnGGG------PFGAVIAKDGEIVAEGSNKvtidNDPTAHAEVCTIRNACQKlgtfdLSGCVIYTSCE 80
Cdd:TIGR00326   1 MNRALDLAKK----GQGtthpnpLVGCVIVKNGEIVGEGAHQ----KAGEPHAEVHALRQAGEN-----AKGATAYVTLE 67

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1276672267  81 PC------PMCFGAIYWAHLDKIYYAndRKDAGKI 109
Cdd:TIGR00326  68 PCshqgrtPPCAEAIIEAGIKKVVVS--MQDPNPL 100
PLN02807 PLN02807
diaminohydroxyphosphoribosylaminopyrimidine deaminase
 7-97 1.56e-05

diaminohydroxyphosphoribosylaminopyrimidine deaminase


Pssm-ID: 215433 [Multi-domain]  Cd Length: 380  Bit Score: 43.61  E-value: 1.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   7 MRRAIELSENSV-RNGGGPF-GAVIAKDGEIVAEGSNkvtidndPTA---HAEVCTIRNACQKlgtfdLSGCVIYTSCEP 81
Cdd:PLN02807   36 MRRCVELARKAIgCTSPNPMvGCVIVKDGRIVGEGFH-------PKAgqpHAEVFALRDAGDL-----AENATAYVSLEP 103

                          90       100
                  ....*....|....*....|..
gi 1276672267  82 C------PMCFGAIYWAHLDKI 97
Cdd:PLN02807  104 CnhygrtPPCTEALIKAKVKRV 125
ribD PRK10786
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6- ...
 1-82 9.34e-05

bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD;


Pssm-ID: 182729 [Multi-domain]  Cd Length: 367  Bit Score: 41.29  E-value: 9.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276672267   1 MTNEELMRRAIELSENSvRNGGGP---FGAVIAKDGEIVAEGSNKVTidNDPtaHAEVCTIRNACQKlgtfdLSGCVIYT 77
Cdd:PRK10786    1 MQDEFYMARALKLAQRG-RFTTHPnpnVGCVIVKDGEIVGEGYHQRA--GEP--HAEVHALRMAGEK-----AKGATAYV 70


                  ....*
gi 1276672267  78 SCEPC 82
Cdd:PRK10786   71 TLEPC 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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