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Conserved domains on  [gi|1276666253|gb|ATV27815|]
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50S ribosomal protein L5 [Prevotella intermedia]

Protein Classification

RplE family protein( domain architecture ID 11414720)

RplE family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RplE COG0094
Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L5 ...
3-180 7.49e-121

Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L5 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 439864 [Multi-domain]  Cd Length: 179  Bit Score: 338.54  E-value: 7.49e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253   3 TAKLKKEYKEQIAPALQKQFNYTSAMQIPVLKKIVINQGLGDATQDKKIIEVAINEITAITGQKAVATYSRKDIANFKLR 82
Cdd:COG0094     1 MPRLKEKYKEEVVPALMKKFGYKNVMQVPKLEKIVINMGVGEAVQDKKLLESAVEDLTLITGQKPVVTKAKKSIANFKLR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253  83 KKMPIGVMVTLRRERMYEFLEKLVRVSLPRIRDFKGIESK-FDGRGNYTLGITEQIIFPEINIDQVDRIQGLNITFVTSA 161
Cdd:COG0094    81 EGMPIGCKVTLRGDRMYEFLDRLINIALPRVRDFRGLSPKsFDGRGNYTLGIKEQIIFPEIDYDKIDKIRGMDITIVTTA 160
                         170
                  ....*....|....*....
gi 1276666253 162 QTDEEGYALLKAFGLPFKN 180
Cdd:COG0094   161 KTDEEARALLKALGFPFRK 179
 
Name Accession Description Interval E-value
RplE COG0094
Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L5 ...
3-180 7.49e-121

Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L5 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439864 [Multi-domain]  Cd Length: 179  Bit Score: 338.54  E-value: 7.49e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253   3 TAKLKKEYKEQIAPALQKQFNYTSAMQIPVLKKIVINQGLGDATQDKKIIEVAINEITAITGQKAVATYSRKDIANFKLR 82
Cdd:COG0094     1 MPRLKEKYKEEVVPALMKKFGYKNVMQVPKLEKIVINMGVGEAVQDKKLLESAVEDLTLITGQKPVVTKAKKSIANFKLR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253  83 KKMPIGVMVTLRRERMYEFLEKLVRVSLPRIRDFKGIESK-FDGRGNYTLGITEQIIFPEINIDQVDRIQGLNITFVTSA 161
Cdd:COG0094    81 EGMPIGCKVTLRGDRMYEFLDRLINIALPRVRDFRGLSPKsFDGRGNYTLGIKEQIIFPEIDYDKIDKIRGMDITIVTTA 160
                         170
                  ....*....|....*....
gi 1276666253 162 QTDEEGYALLKAFGLPFKN 180
Cdd:COG0094   161 KTDEEARALLKALGFPFRK 179
rplE PRK00010
50S ribosomal protein L5; Validated
3-180 5.83e-119

50S ribosomal protein L5; Validated


Pssm-ID: 178791 [Multi-domain]  Cd Length: 179  Bit Score: 333.97  E-value: 5.83e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253   3 TAKLKKEYKEQIAPALQKQFNYTSAMQIPVLKKIVINQGLGDATQDKKIIEVAINEITAITGQKAVATYSRKDIANFKLR 82
Cdd:PRK00010    1 MPRLKEKYKEEIVPALMKEFGYKNVMQVPKLEKIVLNMGVGEAVADKKLLENAVEDLTLITGQKPVVTKAKKSIAGFKLR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253  83 KKMPIGVMVTLRRERMYEFLEKLVRVSLPRIRDFKGIESK-FDGRGNYTLGITEQIIFPEINIDQVDRIQGLNITFVTSA 161
Cdd:PRK00010   81 EGMPIGCKVTLRGERMYEFLDRLINIALPRVRDFRGLSPKsFDGRGNYTLGIKEQIIFPEIDYDKIDKIRGMDITIVTTA 160
                         170
                  ....*....|....*....
gi 1276666253 162 QTDEEGYALLKAFGLPFKN 180
Cdd:PRK00010  161 KTDEEARALLKAFGFPFRK 179
Ribosomal_L5_C pfam00673
ribosomal L5P family C-terminus; This region is found associated with pfam00281.
86-178 6.95e-55

ribosomal L5P family C-terminus; This region is found associated with pfam00281.


Pssm-ID: 459899  Cd Length: 94  Bit Score: 168.73  E-value: 6.95e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253  86 PIGVMVTLRRERMYEFLEKLVRVSLPRIRDFKGIESK-FDGRGNYTLGITEQIIFPEINIDQVDRIQGLNITFVTSAQTD 164
Cdd:pfam00673   1 PIGVKVTLRGEKMYEFLDRLLNVVLPRIRDFRGISPSsFDGRGNYSFGIKEHIIFPEIEYDPDIGIFGMDITIVTTAKTD 80
                          90
                  ....*....|....
gi 1276666253 165 EEGYALLKAFGLPF 178
Cdd:pfam00673  81 EEARALLKELGMPF 94
 
Name Accession Description Interval E-value
RplE COG0094
Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L5 ...
3-180 7.49e-121

Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L5 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439864 [Multi-domain]  Cd Length: 179  Bit Score: 338.54  E-value: 7.49e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253   3 TAKLKKEYKEQIAPALQKQFNYTSAMQIPVLKKIVINQGLGDATQDKKIIEVAINEITAITGQKAVATYSRKDIANFKLR 82
Cdd:COG0094     1 MPRLKEKYKEEVVPALMKKFGYKNVMQVPKLEKIVINMGVGEAVQDKKLLESAVEDLTLITGQKPVVTKAKKSIANFKLR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253  83 KKMPIGVMVTLRRERMYEFLEKLVRVSLPRIRDFKGIESK-FDGRGNYTLGITEQIIFPEINIDQVDRIQGLNITFVTSA 161
Cdd:COG0094    81 EGMPIGCKVTLRGDRMYEFLDRLINIALPRVRDFRGLSPKsFDGRGNYTLGIKEQIIFPEIDYDKIDKIRGMDITIVTTA 160
                         170
                  ....*....|....*....
gi 1276666253 162 QTDEEGYALLKAFGLPFKN 180
Cdd:COG0094   161 KTDEEARALLKALGFPFRK 179
rplE PRK00010
50S ribosomal protein L5; Validated
3-180 5.83e-119

50S ribosomal protein L5; Validated


Pssm-ID: 178791 [Multi-domain]  Cd Length: 179  Bit Score: 333.97  E-value: 5.83e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253   3 TAKLKKEYKEQIAPALQKQFNYTSAMQIPVLKKIVINQGLGDATQDKKIIEVAINEITAITGQKAVATYSRKDIANFKLR 82
Cdd:PRK00010    1 MPRLKEKYKEEIVPALMKEFGYKNVMQVPKLEKIVLNMGVGEAVADKKLLENAVEDLTLITGQKPVVTKAKKSIAGFKLR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253  83 KKMPIGVMVTLRRERMYEFLEKLVRVSLPRIRDFKGIESK-FDGRGNYTLGITEQIIFPEINIDQVDRIQGLNITFVTSA 161
Cdd:PRK00010   81 EGMPIGCKVTLRGERMYEFLDRLINIALPRVRDFRGLSPKsFDGRGNYTLGIKEQIIFPEIDYDKIDKIRGMDITIVTTA 160
                         170
                  ....*....|....*....
gi 1276666253 162 QTDEEGYALLKAFGLPFKN 180
Cdd:PRK00010  161 KTDEEARALLKAFGFPFRK 179
rpl5 CHL00078
ribosomal protein L5
3-180 5.52e-96

ribosomal protein L5


Pssm-ID: 214356 [Multi-domain]  Cd Length: 181  Bit Score: 275.96  E-value: 5.52e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253   3 TAKLKKEYKEQIAPALQKQFNYTSAMQIPVLKKIVINQGLGDATQDKKIIEVAINEITAITGQKAVATYSRKDIANFKLR 82
Cdd:CHL00078    2 VQRLKSLYKEKIVPKLIEKFLYKNIHQVPKLKKIVINRGLGEASQNSKILESSIKELTIITGQKPIITRAKKAIAGFKIR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253  83 KKMPIGVMVTLRRERMYEFLEKLVRVSLPRIRDFKGIESK-FDGRGNYTLGITEQIIFPEINIDQVDRIQGLNITFVTSA 161
Cdd:CHL00078   82 EKMPVGVSVTLRGDKMYAFLDRLINLALPRIRDFQGLSPKsFDGHGNYNLGLKEQLMFPEIDYDKIDQIRGMDISIVTTA 161
                         170
                  ....*....|....*....
gi 1276666253 162 QTDEEGYALLKAFGLPFKN 180
Cdd:CHL00078  162 KTDQEGLALLKELGMPFKD 180
Ribosomal_L5_C pfam00673
ribosomal L5P family C-terminus; This region is found associated with pfam00281.
86-178 6.95e-55

ribosomal L5P family C-terminus; This region is found associated with pfam00281.


Pssm-ID: 459899  Cd Length: 94  Bit Score: 168.73  E-value: 6.95e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253  86 PIGVMVTLRRERMYEFLEKLVRVSLPRIRDFKGIESK-FDGRGNYTLGITEQIIFPEINIDQVDRIQGLNITFVTSAQTD 164
Cdd:pfam00673   1 PIGVKVTLRGEKMYEFLDRLLNVVLPRIRDFRGISPSsFDGRGNYSFGIKEHIIFPEIEYDPDIGIFGMDITIVTTAKTD 80
                          90
                  ....*....|....
gi 1276666253 165 EEGYALLKAFGLPF 178
Cdd:pfam00673  81 EEARALLKELGMPF 94
Ribosomal_L5 pfam00281
Ribosomal protein L5;
28-82 2.52e-25

Ribosomal protein L5;


Pssm-ID: 425579 [Multi-domain]  Cd Length: 57  Bit Score: 92.46  E-value: 2.52e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1276666253  28 MQIPVLKKIVINQGLGDATQDKKIIEVAINEITAITGQKAVATYSRKDIANFKLR 82
Cdd:pfam00281   3 MQVPRIEKVVVNMGVGEAGEDKKLLEKAAKVLEQITGQKPVVTKAKKSIANFKIR 57
rpl5p PRK04219
50S ribosomal protein L5P; Reviewed
28-140 8.97e-24

50S ribosomal protein L5P; Reviewed


Pssm-ID: 235259  Cd Length: 177  Bit Score: 92.21  E-value: 8.97e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253  28 MQIPVLKKIVINQGLGDATQDKKIIEVAINEITaitGQKAVATYSRKDIANFKLRKKMPIGVMVTLRRERMYEFLEKLVR 107
Cdd:PRK04219   12 MRKPRIEKVVVNIGVGESGERLTKAEKLLEELT---GQKPVRTRAKKTIPDFGIRKGEPIGVKVTLRGEKAEEFLKTALE 88
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1276666253 108 VSLPRIRdfkgiESKFDGRGNYTLGITEQIIFP 140
Cdd:PRK04219   89 AVGNRLK-----ASSFDETGNVSFGIEEHIDFP 116
PTZ00156 PTZ00156
60S ribosomal protein L11; Provisional
28-137 3.84e-07

60S ribosomal protein L11; Provisional


Pssm-ID: 185485  Cd Length: 172  Bit Score: 47.73  E-value: 3.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666253  28 MQIPVLKKIVINQGLGDA----TQDKKIIEvaineitAITGQKAVATYSRKDIANFKLRKKMPIGVMVTLRRERMYEFLE 103
Cdd:PTZ00156    8 MRKIRIEKLVLNICVGESgdrlTRAAKVLE-------QLTGQKPVFSKARYTVRSFGIRRNEKIACHVTVRGDKAEEILE 80
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1276666253 104 KLVRVslpriRDFKGIESKFDGRGNYTLGITEQI 137
Cdd:PTZ00156   81 RGLKV-----KEFELKKRNFSDTGNFGFGIQEHI 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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