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Conserved domains on  [gi|1276392726|gb|PIN66661|]
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MAG: hypothetical protein COW69_01090 [Candidatus Huberarchaeum crystalense]

Protein Classification

translation initiation factor IF-6( domain architecture ID 10012129)

translation initiation factor IF-6 binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK04046 PRK04046
translation initiation factor IF-6; Provisional
1-212 1.16e-49

translation initiation factor IF-6; Provisional


:

Pssm-ID: 179728  Cd Length: 222  Bit Score: 161.51  E-value: 1.16e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726   1 MLTKLSLGCEQLIGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQ 80
Cdd:PRK04046    1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEELE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  81 DLKNQLKtIEIGLFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSR 160
Cdd:PRK04046   81 LLKEALD-LNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHP 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1276392726 161 NFNKDERARIEKHLKVPVFEVSVNFGQTALHSGIVANSSGLVVGNQTSAPEL 212
Cdd:PRK04046  160 DATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPEL 211
 
Name Accession Description Interval E-value
PRK04046 PRK04046
translation initiation factor IF-6; Provisional
1-212 1.16e-49

translation initiation factor IF-6; Provisional


Pssm-ID: 179728  Cd Length: 222  Bit Score: 161.51  E-value: 1.16e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726   1 MLTKLSLGCEQLIGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQ 80
Cdd:PRK04046    1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEELE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  81 DLKNQLKtIEIGLFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSR 160
Cdd:PRK04046   81 LLKEALD-LNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHP 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1276392726 161 NFNKDERARIEKHLKVPVFEVSVNFGQTALHSGIVANSSGLVVGNQTSAPEL 212
Cdd:PRK04046  160 DATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPEL 211
TIF6 COG1976
Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; ...
13-212 1.19e-47

Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; Translation initiation factor 6 (eIF-6) is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 441579  Cd Length: 221  Bit Score: 156.06  E-value: 1.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  13 IGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDLKNQLKtIEIG 92
Cdd:COG1976    13 IGVYARANDKYALVPPDLPEKKVEKIEEVLGVEVIETTIAGSRLIGSLAVGNSNGILVPSIVTDEELERLKEALD-LNVE 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  93 LFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALvlfpKKDI----LLGSEIVATNKVCFVSRNFNKDERA 168
Cdd:COG1976    92 VLPSKITALGNLILANDKGALVHPDLSDEAVKKIEDVLGVEVV----RGTIagvkTVGSAAVATNKGVLVHPDATDEELK 167
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1276392726 169 RIEKHLKVPVFEVSVNFGQTALHSGIVANSSGLVVGNQTSAPEL 212
Cdd:COG1976   168 FLEDVLKVPVDVGTVNFGSPFVGSGLVANSKGYLVGEDTTGPEL 211
eIF-6 pfam01912
eIF-6 family; This family includes eukaryotic translation initiation factor 6 as well as ...
13-200 3.11e-43

eIF-6 family; This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologs.


Pssm-ID: 460381  Cd Length: 196  Bit Score: 144.11  E-value: 3.11e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  13 IGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDLKNQLKtIEIG 92
Cdd:pfam01912   9 IGVFARATNDYALVPPGVDSEFYSVIEEELGVPVVETTIAGSRLVGSLTVGNSNGLLVPSTATDEELEHLRNSLP-LNVE 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  93 LFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSRNFNKDERARIEK 172
Cdd:pfam01912  88 RLPERLTALGNVILANDHGALVHPDLSDETEEIIADVLGVEVFRGTIAGIKTVGSAAVATNKGGLVHPDATDEELEELSD 167
                         170       180
                  ....*....|....*....|....*...
gi 1276392726 173 HLKVPVFEVSVNFGQTALHSGIVANSSG 200
Cdd:pfam01912 168 LLGVPVDAGTVNRGSPLVGSGLVANDKG 195
eIF-6 TIGR00323
translation initiation factor eIF-6, putative; This model finds translation initiation factor ...
12-212 9.51e-37

translation initiation factor eIF-6, putative; This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative. [Protein synthesis, Translation factors]


Pssm-ID: 211569  Cd Length: 216  Bit Score: 128.00  E-value: 9.51e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  12 LIGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDLKNQLKTIEI 91
Cdd:TIGR00323   9 EIGVYAKVTEEYALVPVNGSENFYSAFEEELEVPVLHTTIAGSSLVGALTVGNSRGLLVSDQVLDHELDSLPDSLVKVQR 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  92 glFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSRNFNKDERARIE 171
Cdd:TIGR00323  89 --IEERLTALGNLILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELS 166
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1276392726 172 KHLKVPVFEVSVNFGQTALHSGIVANSSGLVVGNQTSAPEL 212
Cdd:TIGR00323 167 SLLGVELVAGTVNRGTTVVGACMVANSKGAVVGLDTTGPEL 207
eIF6 smart00654
translation initiation factor 6;
3-200 3.16e-35

translation initiation factor 6;


Pssm-ID: 128902  Cd Length: 200  Bit Score: 123.53  E-value: 3.16e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726    3 TKLSLGCEQLIGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDL 82
Cdd:smart00654   1 DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQHL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726   83 KNQLK-TIEIGLFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSRN 161
Cdd:smart00654  81 RNSLPdSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPD 160
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1276392726  162 FNKDERARIEKHLKVPVFEVSVNFGQTALHSGIVANSSG 200
Cdd:smart00654 161 TSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNG 199
IF6 cd00527
Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two ...
13-212 7.27e-34

Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.


Pssm-ID: 238292  Cd Length: 220  Bit Score: 120.85  E-value: 7.27e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  13 IGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDLKNQLKTiEIG 92
Cdd:cd00527    12 IGVFAKATNSYCLVPPGGDENFVSKFEEELGVPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPD-EVG 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  93 LFKSKNNI--IGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSRNFNKDERARI 170
Cdd:cd00527    91 VLRVKENLsaLGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEEL 170
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1276392726 171 EKHLKVPVFEVSVNFGQTALHSGIVANSSGLVVGNQTSAPEL 212
Cdd:cd00527   171 SELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPEL 212
 
Name Accession Description Interval E-value
PRK04046 PRK04046
translation initiation factor IF-6; Provisional
1-212 1.16e-49

translation initiation factor IF-6; Provisional


Pssm-ID: 179728  Cd Length: 222  Bit Score: 161.51  E-value: 1.16e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726   1 MLTKLSLGCEQLIGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQ 80
Cdd:PRK04046    1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEELE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  81 DLKNQLKtIEIGLFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSR 160
Cdd:PRK04046   81 LLKEALD-LNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHP 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1276392726 161 NFNKDERARIEKHLKVPVFEVSVNFGQTALHSGIVANSSGLVVGNQTSAPEL 212
Cdd:PRK04046  160 DATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPEL 211
TIF6 COG1976
Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; ...
13-212 1.19e-47

Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; Translation initiation factor 6 (eIF-6) is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 441579  Cd Length: 221  Bit Score: 156.06  E-value: 1.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  13 IGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDLKNQLKtIEIG 92
Cdd:COG1976    13 IGVYARANDKYALVPPDLPEKKVEKIEEVLGVEVIETTIAGSRLIGSLAVGNSNGILVPSIVTDEELERLKEALD-LNVE 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  93 LFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALvlfpKKDI----LLGSEIVATNKVCFVSRNFNKDERA 168
Cdd:COG1976    92 VLPSKITALGNLILANDKGALVHPDLSDEAVKKIEDVLGVEVV----RGTIagvkTVGSAAVATNKGVLVHPDATDEELK 167
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1276392726 169 RIEKHLKVPVFEVSVNFGQTALHSGIVANSSGLVVGNQTSAPEL 212
Cdd:COG1976   168 FLEDVLKVPVDVGTVNFGSPFVGSGLVANSKGYLVGEDTTGPEL 211
eIF-6 pfam01912
eIF-6 family; This family includes eukaryotic translation initiation factor 6 as well as ...
13-200 3.11e-43

eIF-6 family; This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologs.


Pssm-ID: 460381  Cd Length: 196  Bit Score: 144.11  E-value: 3.11e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  13 IGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDLKNQLKtIEIG 92
Cdd:pfam01912   9 IGVFARATNDYALVPPGVDSEFYSVIEEELGVPVVETTIAGSRLVGSLTVGNSNGLLVPSTATDEELEHLRNSLP-LNVE 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  93 LFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSRNFNKDERARIEK 172
Cdd:pfam01912  88 RLPERLTALGNVILANDHGALVHPDLSDETEEIIADVLGVEVFRGTIAGIKTVGSAAVATNKGGLVHPDATDEELEELSD 167
                         170       180
                  ....*....|....*....|....*...
gi 1276392726 173 HLKVPVFEVSVNFGQTALHSGIVANSSG 200
Cdd:pfam01912 168 LLGVPVDAGTVNRGSPLVGSGLVANDKG 195
eIF-6 TIGR00323
translation initiation factor eIF-6, putative; This model finds translation initiation factor ...
12-212 9.51e-37

translation initiation factor eIF-6, putative; This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative. [Protein synthesis, Translation factors]


Pssm-ID: 211569  Cd Length: 216  Bit Score: 128.00  E-value: 9.51e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  12 LIGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDLKNQLKTIEI 91
Cdd:TIGR00323   9 EIGVYAKVTEEYALVPVNGSENFYSAFEEELEVPVLHTTIAGSSLVGALTVGNSRGLLVSDQVLDHELDSLPDSLVKVQR 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  92 glFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSRNFNKDERARIE 171
Cdd:TIGR00323  89 --IEERLTALGNLILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELS 166
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1276392726 172 KHLKVPVFEVSVNFGQTALHSGIVANSSGLVVGNQTSAPEL 212
Cdd:TIGR00323 167 SLLGVELVAGTVNRGTTVVGACMVANSKGAVVGLDTTGPEL 207
eIF6 smart00654
translation initiation factor 6;
3-200 3.16e-35

translation initiation factor 6;


Pssm-ID: 128902  Cd Length: 200  Bit Score: 123.53  E-value: 3.16e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726    3 TKLSLGCEQLIGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDL 82
Cdd:smart00654   1 DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQHL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726   83 KNQLK-TIEIGLFKSKNNIIGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSRN 161
Cdd:smart00654  81 RNSLPdSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPD 160
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1276392726  162 FNKDERARIEKHLKVPVFEVSVNFGQTALHSGIVANSSG 200
Cdd:smart00654 161 TSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNG 199
IF6 cd00527
Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two ...
13-212 7.27e-34

Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.


Pssm-ID: 238292  Cd Length: 220  Bit Score: 120.85  E-value: 7.27e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  13 IGLFLFATDNYCLAPFNIKPFEIRMIETALNIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDLKNQLKTiEIG 92
Cdd:cd00527    12 IGVFAKATNSYCLVPPGGDENFVSKFEEELGVPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPD-EVG 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  93 LFKSKNNI--IGNLVIVNDNGLVIDSSLEKAEIQTIEKFFEMTALVLFPKKDILLGSEIVATNKVCFVSRNFNKDERARI 170
Cdd:cd00527    91 VLRVKENLsaLGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEEL 170
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1276392726 171 EKHLKVPVFEVSVNFGQTALHSGIVANSSGLVVGNQTSAPEL 212
Cdd:cd00527   171 SELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPEL 212
PTZ00136 PTZ00136
eukaryotic translation initiation factor 6-like protein; Provisional
13-218 4.60e-16

eukaryotic translation initiation factor 6-like protein; Provisional


Pssm-ID: 185471  Cd Length: 247  Bit Score: 74.38  E-value: 4.60e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  13 IGLFLFATDNYCL-APFNIKPFeIRMIETAL--NIKTIKAKIYNSSFLGLFCAGNSKKLLISDVITADELQDLKNQL-KT 88
Cdd:PTZ00136   13 IGVFSKLTNSYCLvALGGSENF-YSVFESELapHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQELQHLRNSLpDS 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276392726  89 IEIGLFKSKNNIIGNLVIVNDNGLVIDSSLEK------AEIQTIEKFFEMTAlvlfpkKDILLGSEIVATNKVCFVSRNF 162
Cdd:PTZ00136   92 VKVQRVEERLSALGNCIACNDYVALIHPDLDReteeiiQDVLGVEVFRTTIA------GNVLVGTYCVFTNQGGLVHPKT 165
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1276392726 163 NKDERARIEKHLKVPVFEVSVNFGQTALHSGIVANSSGLVVGNQTSAPELTTLYQI 218
Cdd:PTZ00136  166 SVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERI 221
TIF6 COG1976
Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; ...
149-215 6.68e-06

Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; Translation initiation factor 6 (eIF-6) is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 441579  Cd Length: 221  Bit Score: 45.51  E-value: 6.68e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1276392726 149 IVATNKVCFVSRNFNKDERARIEKHLKVPVFEVSVNfGQTALHSGIVANSSGLVVGNQTSAPELTTL 215
Cdd:COG1976    17 ARANDKYALVPPDLPEKKVEKIEEVLGVEVIETTIA-GSRLIGSLAVGNSNGILVPSIVTDEELERL 82
PRK04046 PRK04046
translation initiation factor IF-6; Provisional
149-215 3.74e-04

translation initiation factor IF-6; Provisional


Pssm-ID: 179728  Cd Length: 222  Bit Score: 40.18  E-value: 3.74e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1276392726 149 IVATNKVCFVSRNFNKDERARIEKHLKVPVFEVSVNfGQTALHSGIVANSSGLVVGNQTSAPELTTL 215
Cdd:PRK04046   17 ARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIA-GSSLVGSLAAGNSNGILVPSIVLDEELELL 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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