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Conserved domains on  [gi|1275874107|gb|ATU74734|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Formosatettix qinlingensis]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-441 1.95e-137

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 401.45  E-value: 1.95e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107   1 MLMFIFSLLFMIPLSLL-NSWWAVQFWFFFLSFMFIFFGDFSFFVTNLGFGMGVDFFSWLMILLSFWICSLMIMSSCSIK 79
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLkNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  80 FSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSCILW 159
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 160 MGGHVGGLCYYLFFDLFG-GVYFYLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVF 238
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSlNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 239 YSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNI 318
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 319 SYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLYS 398
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1275874107 399 FSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPLNIMFMCCDYYL 441
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-441 1.95e-137

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 401.45  E-value: 1.95e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107   1 MLMFIFSLLFMIPLSLL-NSWWAVQFWFFFLSFMFIFFGDFSFFVTNLGFGMGVDFFSWLMILLSFWICSLMIMSSCSIK 79
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLkNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  80 FSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSCILW 159
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 160 MGGHVGGLCYYLFFDLFG-GVYFYLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVF 238
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSlNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 239 YSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNI 318
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 319 SYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLYS 398
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1275874107 399 FSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPLNIMFMCCDYYL 441
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 46-375 1.46e-57

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 196.84  E-value: 1.46e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  46 NLGFGMGVDFFSWLMILLSFWICSLMIMSSCSI---KFSFYFSDIFMLIVLMLMLslyisFSVVNLFNFYLFFEFSLIPT 122
Cdd:COG1008    73 GISYHLGVDGISLPLVLLTALLTPLAILASWNEikkRPKLYYALLLLLEAGMIGV-----FLALDLFLFYVFWELMLIPM 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 123 LMLILGWGYqPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLF------FDLFGGVYFYLSMILAFLIKLPMY 196
Cdd:COG1008   148 YFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFIAFAVKVPMF 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 197 MLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRvFKCMVF--YSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAY 274
Cdd:COG1008   227 PFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLR-FALPLFpeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAY 305

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 275 SSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMS 354
Cdd:COG1008   306 SSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLG 385

                         330       340
                  ....*....|....*....|.
gi 1275874107 355 APPSLNLIGEISLLNGLISYS 375
Cdd:COG1008   386 LPGTSGFVGEFLVLLGAFQVN 406
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-397 5.13e-51

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 179.37  E-value: 5.13e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  46 NLGFGMGVDFFSWLMILLSFWICSLMIMSScsiKFSFYFSDIFMLIVLMLMLSLYI-SFSVVNLFNFYLFFEFSLIPTLM 124
Cdd:TIGR01972  68 GISYHLGVDGISLLLVLLTALLTLLAILAS---WESIQKRVKEFYALLLLLEAGVIgVFLALDLFLFYVFWEAMLIPMYL 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 125 LILGWGyQPERVSASMYLIFYTVAASLPLLSCIL---WMGGHVGGLCYYLFFDLFGGV--YFYLSMILAFLIKLPMYMLH 199
Cdd:TIGR01972 145 LIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILglyFLGGGTFDLLELLNLPLPFGVqtWLFLAFFIAFAVKVPLFPLH 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 200 LWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVfkCMVFY---SLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSS 276
Cdd:TIGR01972 224 TWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRF--NLPLFpdaSLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSS 301

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 277 VSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAP 356
Cdd:TIGR01972 302 ISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1275874107 357 PSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLY 397
Cdd:TIGR01972 382 GTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 107-379 1.09e-49

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 170.57  E-value: 1.09e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 107 NLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLFFDLFGGVY------ 180
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssgll 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 181 -FYLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNFNFYIILLSLYGGLMVS 259
Cdd:pfam00361  83 lLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 260 LICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLS-NISYERLGSRLFILNKGMISYM 338
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTM 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1275874107 339 PSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYTM 379
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFL 283
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-441 1.95e-137

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 401.45  E-value: 1.95e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107   1 MLMFIFSLLFMIPLSLL-NSWWAVQFWFFFLSFMFIFFGDFSFFVTNLGFGMGVDFFSWLMILLSFWICSLMIMSSCSIK 79
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLkNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  80 FSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSCILW 159
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 160 MGGHVGGLCYYLFFDLFG-GVYFYLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVF 238
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSlNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 239 YSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNI 318
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 319 SYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLYS 398
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1275874107 399 FSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPLNIMFMCCDYYL 441
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 47-439 1.73e-118

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 352.22  E-value: 1.73e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  47 LGFGMGVDFFSWLMILLSFWICSLMIMSSCSIKFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLI 126
Cdd:MTH00150   16 LSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLLI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 127 LGWGYQPERVSASMYLIFYTVAASLPLLSCILWMGGHVG----GLCYYLFFDLFGGVYFYLSMILAFLIKLPMYMLHLWL 202
Cdd:MTH00150   96 LGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGssfmLLISSLRKLLSSMGLWGLLVFLAFLVKLPMYPFHLWL 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 203 PKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSL 282
Cdd:MTH00150  176 PKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSL 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 283 VISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLI 362
Cdd:MTH00150  256 VLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLL 335

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1275874107 363 GEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLYSFSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPLNIMFMCCDY 439
Cdd:MTH00150  336 SEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDL 412
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-435 4.63e-107

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 324.24  E-value: 4.63e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107   1 MLMFIFSLLFMIPLSLLNSWWAV--QFWFFFLSFMFIFFGDFSFFVTNLGFGMGVDFFSWLMILLSFWICSLMIMSSCSI 78
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWSFfsNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  79 KFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSCIL 158
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 159 WMGGHVGGLCYYLFFDLFGGVY----FYLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFK 234
Cdd:MTH00205  161 FLNSLNFSLSMFFNFPLNFSDFylflYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 235 CMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFC 314
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 315 LSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSL 394
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1275874107 395 YLYSFSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPLNIMFM 435
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILIL 441
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-438 4.48e-105

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 318.99  E-value: 4.48e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107   1 MLMFIFSLLFMIPLSLLNSWWAVQFWFFFLSFMFIFFGDFSFFVT----NLGFGMGVDFFSWLMILLSFWICSLMIMSSC 76
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWALTFSTLLLLSLFTLLNLYPMSapysMFTESLSSDMLSAPLITLTLWITALMILASF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  77 SIKFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSC 156
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 157 ILWMGGHVGGLCYYLFFDLFGGVYFY----LSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRV 232
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSSMEPPSIYLMnlwwLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 233 FKCMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGL 312
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 313 FCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVY 392
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 1275874107 393 SLYLYSFSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPLNIMFMCCD 438
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 45-403 4.03e-101

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 309.05  E-value: 4.03e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  45 TNLGFGMGVDFFSWLMILLSFWICSLMIMSSCS--IKFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPT 122
Cdd:MTH00124   50 KNLTQWLGIDQISAPLLVLSCWLLPLMILASQNhlQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPT 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 123 LMLILGWGYQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLFFDL-------FGGVYFYLSMILAFLIKLPM 195
Cdd:MTH00124  130 LILITRWGNQPERLSAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQLThptltnsWTNLLLWLACLMAFMVKMPL 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 196 YMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYS 275
Cdd:MTH00124  210 YGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYS 289

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 276 SVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSA 355
Cdd:MTH00124  290 SVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMAL 369

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1275874107 356 PPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLYSFSQHG 403
Cdd:MTH00124  370 PPTINLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRG 417
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-430 1.23e-95

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 294.92  E-value: 1.23e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107   1 MLMFIFSLLFMIPLSLLNSWWAVQFWFFFLSFMFIFFGDFSFFVTNLGFGMGVDFFSWLMILLSFWICSLMIMSSCSI-- 78
Cdd:MTH00206    5 PLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQNHmk 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  79 KFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSCIL 158
Cdd:MTH00206   85 NEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 159 WMGGHVGGLCYYLFFDLFGGVYF----YLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFK 234
Cdd:MTH00206  165 FLQNSLGSLSLYILYFSKLTTWNnnlwWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIIL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 235 CMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFC 314
Cdd:MTH00206  245 ILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFC 324

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 315 LSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSL 394
Cdd:MTH00206  325 LANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSL 404

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 1275874107 395 YLYSFSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPL 430
Cdd:MTH00206  405 YMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPV 440
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 51-436 3.63e-92

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 286.04  E-value: 3.63e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  51 MGVDFFSWLMILLSFWICSLMIMSSCS--IKFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILG 128
Cdd:MTH00068   56 FGIDQISSPLLILTCWLLPLMILASQNhlKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITR 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 129 WGYQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLFFDL-------FGGVYFYLSMILAFLIKLPMYMLHLW 201
Cdd:MTH00068  136 WGNQEERLNAGTYFLFYTLAGSLPLLIALLILQNSLGSLSLILLELMspmqlmtYTNKIWWLACLLAFMVKMPLYGLHLW 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 202 LPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMS 281
Cdd:MTH00068  216 LPKAHVEAPIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMG 295

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 282 LVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNL 361
Cdd:MTH00068  296 LVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNL 375

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1275874107 362 IGEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLYSFSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPLnIMFMC 436
Cdd:MTH00068  376 WGELTIMVSLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPM-LLLIL 449
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 46-430 4.76e-91

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 283.41  E-value: 4.76e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  46 NLGFGMGVDFFSWLMILLSFWICSLMIMSSCSI--KFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTL 123
Cdd:MTH00044   52 NLSLSLATDSLSSPLIILSCWLAPLSLLASINHlsNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTL 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 124 MLILGWGYQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLFFDLFGGVY--FYLSM-----ILAFLIKLPMY 196
Cdd:MTH00044  132 ILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAIYSSSSSLSIPLSELNWLTSLssNSSSIwwifcILAFLVKMPIY 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 197 MLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNF-NFYIILLSLYGGLMVSLICLRQLDLKMLIAYS 275
Cdd:MTH00044  212 GFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYS 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 276 SVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSA 355
Cdd:MTH00044  292 SVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGL 371

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1275874107 356 PPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLYSFSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPL 430
Cdd:MTH00044  372 PPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPL 446
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 60-430 5.58e-86

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 270.23  E-value: 5.58e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  60 MILLSFWICSLMIMSSCS--IKFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVS 137
Cdd:MTH00110   65 LLILTTWLLPLMLMASQHhlSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLN 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 138 ASMYLIFYTVAASLPLLSCILWMGGHVGGL-------CYYLFFDLFGGVYFYLSMILAFLIKLPMYMLHLWLPKAHVEAP 210
Cdd:MTH00110  145 AGLYFLFYTLVGSLPLLVALLYIQNNLGSLnflllqlWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAP 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 211 ISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSM 290
Cdd:MTH00110  225 IAGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQ 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 291 NIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNG 370
Cdd:MTH00110  305 TPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMS 384

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 371 LISYSYYTMFFLFFLSFFSCVYSLYLYSFSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPL 430
Cdd:MTH00110  385 SFSWSNITIILMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPL 444
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 45-430 2.71e-79

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 252.95  E-value: 2.71e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  45 TNLGFGMGVDFFSWLMILLSFWICSLMIMSSCSIKFSFYFSDIFMLIVLM--LMLSLYISFSVVNLFNFYLFFEFSLIPT 122
Cdd:MTH00127   51 SSLNLYMATDPLSTPLLVLTCWLLPLMILASQNHTAPEPINRQRMYITLLtsLQIFLILAFGATEIIMFYVMFEATLIPT 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 123 LMLILGWGYQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCY-------YLFFDLFGGVYFYLSMILAFLIKLPM 195
Cdd:MTH00127  131 LIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMltlqysqPLQLSSWADKLWWAGCLLAFLVKMPL 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 196 YMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYS 275
Cdd:MTH00127  211 YGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYS 290

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 276 SVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSA 355
Cdd:MTH00127  291 SVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLAL 370

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1275874107 356 PPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLYSFSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPL 430
Cdd:MTH00127  371 PPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPL 445
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 46-375 1.46e-57

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 196.84  E-value: 1.46e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  46 NLGFGMGVDFFSWLMILLSFWICSLMIMSSCSI---KFSFYFSDIFMLIVLMLMLslyisFSVVNLFNFYLFFEFSLIPT 122
Cdd:COG1008    73 GISYHLGVDGISLPLVLLTALLTPLAILASWNEikkRPKLYYALLLLLEAGMIGV-----FLALDLFLFYVFWELMLIPM 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 123 LMLILGWGYqPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLF------FDLFGGVYFYLSMILAFLIKLPMY 196
Cdd:COG1008   148 YFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFIAFAVKVPMF 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 197 MLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRvFKCMVF--YSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAY 274
Cdd:COG1008   227 PFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLR-FALPLFpeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAY 305

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 275 SSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMS 354
Cdd:COG1008   306 SSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLG 385

                         330       340
                  ....*....|....*....|.
gi 1275874107 355 APPSLNLIGEISLLNGLISYS 375
Cdd:COG1008   386 LPGTSGFVGEFLVLLGAFQVN 406
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 52-397 8.55e-54

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 186.81  E-value: 8.55e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  52 GVDFFSWLMILLS-FWICSLMIMSSCSIKFSFyfsDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWG 130
Cdd:MTH00204   80 AVDGVSLFFILLTtLLIPICILISWKSIKFLF---KEFLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWG 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 131 YQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLF----FDLFGGVYFYLSMILAFLIKLPMYMLHLWLPKAH 206
Cdd:MTH00204  157 SREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILlnikLPLSIQKWLLVGFFLSLAVKIPQIPFHIWLPQAH 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 207 VEAPISGSMILAGVLLKLGGYGLIRvFKCMVF--YSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVI 284
Cdd:MTH00204  237 VEAPVAGSVILAGILLKLGGYGFLR-FSWPLFpaASEYFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVP 315

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 285 SGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGE 364
Cdd:MTH00204  316 LGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGE 395

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1275874107 365 ISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLY 397
Cdd:MTH00204  396 FFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 52-397 1.12e-52

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 183.71  E-value: 1.12e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  52 GVDFFSWLMILLSFWICSLMIMSSC-SIKFsfyFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWG 130
Cdd:MTH00217   77 AVDGISIFFLILTALLTPICILISWnSIKF---LIKEFLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIWG 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 131 YQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYY----LFFDLFGGVYFYLSMILAFLIKLPMYMLHLWLPKAH 206
Cdd:MTH00217  154 SREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQalccLKIEKELQYFIFLGFFLSLAIKIPKIPFHIWLPQAH 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 207 VEAPISGSMILAGVLLKLGGYGLIRV-FKCMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVIS 285
Cdd:MTH00217  234 VEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTL 313

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 286 GLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEI 365
Cdd:MTH00217  314 GIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEF 393

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1275874107 366 SLLNGLISYSYYTMFFLFFLSFFSCVYSLYLY 397
Cdd:MTH00217  394 LSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 46-397 1.19e-52

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 183.87  E-value: 1.19e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  46 NLGFGMGVDFFSWLMILLSFWICSLMIMSS-CSIKFSFYFSDIFMLIVLMLMLslyISFSVVNLFNFYLFFEFSLIPTLM 124
Cdd:PRK05846   73 GISYHLGVDGISLLLVVLTALLTPLAVLASwEEIKKRVKFYMAALLWLEGGVI---GVFAALDLLLFYVFFEAMLIPMYF 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 125 LILGWGYqPERVSASMYLIFYTVAASLPLLSCILWMGGHVG--------GLCYYLFFDLFGGVYFYLSMILAFLIKLPMY 196
Cdd:PRK05846  150 LIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYYnatgtfdiADLLNLPLPPGVQYWLFLAFFIAFAVKMPMF 228

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 197 MLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVfkCMVFY---SLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIA 273
Cdd:PRK05846  229 PLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRF--SLPLFpdaSHEFAPIIITLGVIAIIYGALVALAQTDIKKLIA 306

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 274 YSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNM 353
Cdd:PRK05846  307 YSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASL 386

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1275874107 354 SAPPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLY 397
Cdd:PRK05846  387 GLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLY 430
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-397 5.13e-51

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 179.37  E-value: 5.13e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  46 NLGFGMGVDFFSWLMILLSFWICSLMIMSScsiKFSFYFSDIFMLIVLMLMLSLYI-SFSVVNLFNFYLFFEFSLIPTLM 124
Cdd:TIGR01972  68 GISYHLGVDGISLLLVLLTALLTLLAILAS---WESIQKRVKEFYALLLLLEAGVIgVFLALDLFLFYVFWEAMLIPMYL 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 125 LILGWGyQPERVSASMYLIFYTVAASLPLLSCIL---WMGGHVGGLCYYLFFDLFGGV--YFYLSMILAFLIKLPMYMLH 199
Cdd:TIGR01972 145 LIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILglyFLGGGTFDLLELLNLPLPFGVqtWLFLAFFIAFAVKVPLFPLH 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 200 LWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVfkCMVFY---SLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSS 276
Cdd:TIGR01972 224 TWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRF--NLPLFpdaSLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSS 301

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 277 VSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAP 356
Cdd:TIGR01972 302 ISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1275874107 357 PSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSLYLY 397
Cdd:TIGR01972 382 GTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 107-379 1.09e-49

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 170.57  E-value: 1.09e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 107 NLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLFFDLFGGVY------ 180
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssgll 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 181 -FYLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNFNFYIILLSLYGGLMVS 259
Cdd:pfam00361  83 lLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 260 LICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLS-NISYERLGSRLFILNKGMISYM 338
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTM 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1275874107 339 PSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYTM 379
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFL 283
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 58-364 5.35e-45

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 163.55  E-value: 5.35e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  58 WLMILLSFWICSLMIMSSCSIKfsfYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVS 137
Cdd:MTH00226  106 YFIILTGFIVPCSILISWHSVK---YLTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGSREEKMQ 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 138 ASMYLIFYTVAASLPLLSCILWMGgHVGGLCYYLFFDLFGGV-------YFYLSMILAFLIKLPMYMLHLWLPKAHVEAP 210
Cdd:MTH00226  183 AAYYFFFYTLIGSVLMLLCLFSLY-NIHGTTDYLTLASCSHVvseqtqkWIFLGIFLAMAVKIPIFPFHIWLPKAHVEAP 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 211 ISGSMILAGVLLKLGGYGLIRV-FKCMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFS 289
Cdd:MTH00226  262 VAGSVLLAGILLKLGGYGLVRLsWPILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVT 341

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1275874107 290 MNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGE 364
Cdd:MTH00226  342 HDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGE 416
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 66-434 2.85e-40

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 148.52  E-value: 2.85e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  66 WICSLMIMSSCSIKFSFYFSDIFMLIVLMLMLSLYIS---FSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYL 142
Cdd:MTH00094   39 FVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICllfFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYL 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 143 IFYTVAASLPLLSCILwmggHVGGLCYYLFFDLFGGVYFYLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLL 222
Cdd:MTH00094  119 LFYAAFFSFPFLFVYL----KNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLL 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 223 KLGGYGLIRVFKCMVFYSLNFnfyIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMM 302
Cdd:MTH00094  195 KLGTAGFLRILGSLNFVYNNF---WIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMM 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 303 LGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYTMFFL 382
Cdd:MTH00094  272 LAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFI 351

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1275874107 383 FFLSFFSCVYSLYLYSFSQHGCYYSGLYSVSSCYLIEFHLIFLHWFPLNIMF 434
Cdd:MTH00094  352 FFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 47-378 4.55e-35

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 135.93  E-value: 4.55e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  47 LGFGMGVDFFSWLMILLSFWICSLMIMSSCSIKFS---FYFsdifmlivlmLMLSLYIS----FSVVNLFNFYLFFEFSL 119
Cdd:PRK12561   51 LEWSLGVDGLSMPLVLLSGLITTLSIFASWKVTRKprlFYF----------LMLVLYSAqigvFLAQDLLLFFLMWELEL 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 120 IPTLMLILGWGYQpERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLF------FDLFGGVYFYLSMILAFLIKL 193
Cdd:PRK12561  121 VPVYLLISIWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAelgaksYPLALELLLYAGFLIAFGVKL 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 194 PMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRvFKCMVFYSLNFNFYIILLSL------YGGLMvsliCLRQLD 267
Cdd:PRK12561  200 PIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIR-FNVQMLPDAHVYFAPALAILgvvniiYGALN----AFAQDN 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 268 LKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSrLFILNKGMISYMPSMSLWWFM 347
Cdd:PRK12561  275 VKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHT-LSIPNMGGLAKVMPKTFALFT 353

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1275874107 348 LSACNMSAPPSLN-LIGEISLLNGLISYSYYT 378
Cdd:PRK12561  354 ASSMASLALPGMSgFVSELTVFLGITSSDVYS 385
ndhD CHL00011
NADH dehydrogenase subunit 4
 51-354 8.76e-31

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 123.90  E-value: 8.76e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  51 MGVDFFSWLMILLSFWICSLMIMSSCSIKFS---FYFsdifmlivlmLMLSLYI----SFSVVNLFNFYLFFEFSLIPTL 123
Cdd:CHL00011   80 LGIDGLSIGPILLTGFITTLATLAAWPVTRNsrlFYF----------LMLAMYSgqigLFSSRDLLLFFIMWELELIPVY 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 124 MLILGWGYQpERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLFFDLFGGVY-------FYLSMILAFLIKLPMY 196
Cdd:CHL00011  150 LLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMGLYGSNEPTLNFETLANQSYpvaleilFYIGFLIAYAVKLPII 228

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 197 MLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLN-FNFYIILLSLYGGLMVSLICLRQLDLKMLIAYS 275
Cdd:CHL00011  229 PLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSiFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYS 308

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 276 SVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLgsRLFILNK--GMISYMPSMslwWFMLSACNM 353
Cdd:CHL00011  309 SVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKI---FTMFSSFSM 383


                  .
gi 1275874107 354 S 354
Cdd:CHL00011  384 A 384
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 47-377 2.67e-30

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 121.41  E-value: 2.67e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  47 LGFGMGVDFFSWLMILLSFWICSLMIMSSCSIKFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLI 126
Cdd:COG0651    68 FGIVLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLV 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 127 LGWGYQPERVSASMYLIFYTVAASLpLLSCILWMGGHVGGLCYYLFFDLFGGVY------FYLSMILAFLIKLPMYMLHL 200
Cdd:COG0651   148 ALGGTKEALRAGLKYLILNLVGSAL-FLLGVGLLYGATGTLNMADLAARLAELDpglllaAFALLLVGFGIKAALFPLHF 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 201 WLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKcMVFYSLNFNFYIILLSLYGGL-MV--SLICLRQLDLKMLIAYSSV 277
Cdd:COG0651   227 WLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLT-LLFGADPALFLGTLLLVLGLLtMLvgALGALAQRDLKRLLAYSSV 305

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 278 SHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSlWWFMLSACNMSA-P 356
Cdd:COG0651   306 SQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTA-AAFLIGALALAGlP 384

                         330       340
                  ....*....|....*....|.
gi 1275874107 357 PSLNLIGEISLLNGLISYSYY 377
Cdd:COG0651   385 PLSGFVSKWLLLQAALEAGAW 405
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 47-379 8.33e-30

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 121.35  E-value: 8.33e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  47 LGFGMGVDFFSWLMILLSFWICSLMIMSSCSIKFS---FYFsdifmlivlmLMLSLY----ISFSVVNLFNFYLFFEFSL 119
Cdd:PRK02546   79 LTWSVGADGLSMPLILLTGFITTLAVLAAWPVTFKpklFYF----------LMLAMYggqiAVFAVQDMLLFFLAWELEL 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 120 IPTLMLILGWGYQpERVSASMYLIFYTVAASLPLLSCILWMG----------GHVGGLCYYLFFDLFggvyFYLSMILAF 189
Cdd:PRK02546  149 IPVYLLLAIWGGK-KRQYAATKFILYTAGSSLFILLAALAMAfygdtptfdmTALAAKDFGLGFQLL----CYAGLLIAY 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 190 LIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRvFKCMVFYSLNFNF--YIILLSLYGGLMVSLICLRQLD 267
Cdd:PRK02546  224 GVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLR-MNAGMLPDAHAQFapLLIVLGVVNIIYAALTSFAQRN 302

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 268 LKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFM 347
Cdd:PRK02546  303 LKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTA 382

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1275874107 348 LSACNMSAPPSLNLIGEISLLNGLISYSYYTM 379
Cdd:PRK02546  383 CSLASLALPGMSGFVAELMVFVGFATSDAYTL 414
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
47-326 2.56e-23

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 102.09  E-value: 2.56e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  47 LGFGMGVDFFSW-LMILLSFWICSLMIMSSCSIKFS-FYFSdifmlIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLM 124
Cdd:PRK06473   71 LSYHLGVDGLSLpLLVLNSLLTLIAIYSSDESIQRPrFYYS-----LLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYL 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 125 LILGWGYQpERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYL------FFDLFGGVYFYLSMILAFLIKLPMYML 198
Cdd:PRK06473  146 LIAIWGGQ-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYeplrshTLPLSTQLLLLAPILVGFGIKIPLVPF 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 199 HLWLPKAHVEAPISGSMILAGVLLKLGGYGLIR-----VFKCMVFYSLNFNFYIILLSLYGGLMVslicLRQLDLKMLIA 273
Cdd:PRK06473  225 HTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRfgvglFPEAWVYLAPWLATWAVVSVLYGASCA----IAQKDMKKMVA 300

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1275874107 274 YSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSR 326
Cdd:PRK06473  301 YSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSR 353
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 47-373 3.79e-22

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 98.41  E-value: 3.79e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  47 LGFGMGVDFFSWLMILLSFWICSLMimSSCSIKFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLI 126
Cdd:PRK08375   69 IGIELRADSLSALFLLVTSILAIAA--LLYAIGYGEHRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALV 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 127 LGWGYQPERVSASMYLIFYTVAASLPLLSCILwmgghVGGLCYYLFFDLFGG---------VYFYLsMILAFLIKLPMYM 197
Cdd:PRK08375  147 AMGGDRRALAAARKYLIVGLIGSTFLLIGVGL-----LYGVTGTLNMADLAGalaenptvvTAFGF-VLLALALKAAVFP 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 198 LHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIR----VFKCMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIA 273
Cdd:PRK08375  221 LHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRiyftVFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLA 300

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 274 YSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNM 353
Cdd:PRK08375  301 YSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLI 380

                         330       340
                  ....*....|....*....|
gi 1275874107 354 SAPPSLNLIGEISLLNGLIS 373
Cdd:PRK08375  381 GVPPTSGFVSKWYLVVGAVE 400
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
47-334 1.03e-19

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 91.31  E-value: 1.03e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  47 LGFGMGVDFFSWLMILLSfwiCSLMIMSSCSIKFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLI 126
Cdd:PRK07363   71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 127 LGWGYQpERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYL------FFDLFGGVYFYLSMILAFLIKLPMYMLHL 200
Cdd:PRK07363  148 AIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYdaistqNLSLNTQLILLTGLLLGFGIKIPLVPLHT 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 201 WLPKAHVEAPISGSMILAGVLLKLGGYGLIRvFKCMVFYSlNFNFYIILLSLYGGLMV---SLICLRQLDLKMLIAYSSV 277
Cdd:PRK07363  227 WLPDAYTEASPAVAILLGGVLAKLGTYGLLR-FGLQLFPQ-TWSLVAPGLAIIGTISViygALSAIAQKDIKRMVAYSSI 304

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1275874107 278 SHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSR-LFILNKGM 334
Cdd:PRK07363  305 GHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRdLDVLNGLM 362
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 63-428 1.07e-17

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 84.59  E-value: 1.07e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  63 LSFWICSLMIMSSCSIKFSFYF--SDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASM 140
Cdd:MTH00062   46 LSFYLILLVLFLGLYSQVMFYNllSGVSRFFLFLSLIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASW 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 141 YLIFYTVAASLPLLSCILWMgGHVGGLCYYLFFDLFGGVYF--YLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILA 218
Cdd:MTH00062  126 YFLGYLLLTSLPLLLCLLYL-SLVNGSFNFSDWGSDDSVSLivYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLS 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 219 GVLLKLGGYGLIRVfkCMVFYSLNFNFYIILLSLYgGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGS 298
Cdd:MTH00062  205 GYIMKLGLLGVYRF--CGFIFSGSFLGYLFLCCLF-SVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLS 281

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 299 IIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLL-NGLISYSYY 377
Cdd:MTH00062  282 FFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVsSSFGVLVYL 361

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1275874107 378 TMFFLFFLSFFSCVYSLYLYSFSQHGCYYSGLYSVSSCYLIEFHLIFLHWF 428
Cdd:MTH00062  362 LFWCFYLFFGGLVPLILLGHLLIRSESYESINVSNYSYLFFLIFLVFWCYL 412
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 108-378 1.95e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 75.01  E-value: 1.95e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 108 LFNFYLFFEFSLIPTLMLILGWGYQPERVSASM-YLIFYTVAASLPLLSCILWMGGH-------VGGLCYYLFFDLFGGV 179
Cdd:PRK12667  135 AFNLFVMLEVLSISAYGLVAYYRDRGDAVEAAIkYALIGAVGTTLYFLALAFLYATFgtlnmadLSAKIRGLSFPLTGGL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 180 Y---------FYLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKcMVFYSLN-------- 242
Cdd:PRK12667  215 AgnpplalgvALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLY-TIFGISPslidfraa 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 243 FNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYER 322
Cdd:PRK12667  294 LSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHA 373

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1275874107 323 LGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYT 378
Cdd:PRK12667  374 AGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYL 429
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 198-378 2.34e-12

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 68.42  E-value: 2.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 198 LHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRvFKCMVFYSLNFNFYIILLSLYGGLMV---SLICLRQLDLKMLIAY 274
Cdd:PRK06458  233 MHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLR-YYILIDAAIGSDFPGRLLLIFGLLSVlvaAFFLLRQRDIKRLFAY 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 275 SSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSlWWFMLSACNMS 354
Cdd:PRK06458  312 SSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTG-WGLMLGALAIA 390

                         170       180
                  ....*....|....*....|....*
gi 1275874107 355 -APPSLNLIGEISLLNGLISYSYYT 378
Cdd:PRK06458  391 gMPPFGVFISEFLILTAGLARGPLL 415
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 84-372 3.78e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 65.14  E-value: 3.78e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  84 FSDIFMLIVLMLMLSlyisfsvVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSCILWMGGH 163
Cdd:PRK08667  116 LTALFILSMLGVVAS-------ANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQ 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 164 VGGLCYYLFFDLFGGVYF-YLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLN 242
Cdd:PRK08667  189 TGSFELSPLGASAGILSLvFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELW 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 243 FNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMML-----------GHGLCSSG 311
Cdd:PRK08667  269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALlalggalfhslNHALFKSL 348

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1275874107 312 LFCLSNISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLI 372
Cdd:PRK08667  349 LFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFF 409
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 53-313 1.20e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 63.48  E-value: 1.20e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  53 VDFFSWLMILLSFWICSLMIMSSCSIKFSFyfSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILgWGYQ 132
Cdd:PRK08668   67 LTHLSWFFAMISLLVIFSVAFFMVSEKTKN--DAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVP-MGKK 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 133 PERVSASMYLIFYTVAASLPLLSCilwmgghvgGLCYYLFFDL--------------FGGVYFYLSMILAF-LIKLPMYM 197
Cdd:PRK08668  144 ESRKASLKYFVLSAIGAYAMLYAI---------FLIYAKTGTFdfadisqglindtsTGFALIVFLFLLAFgVAKAGIFP 214

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 198 LHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCM----VFYSLN-------FNFYIILLSLYGGLMVSLICLRQL 266
Cdd:PRK08668  215 LHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLpgtkLFSEFGtyrgvplFNYILAWLGNISIIVGTLMAILQE 294

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1275874107 267 DLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLF 313
Cdd:PRK08668  295 DIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 182-328 1.89e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 59.38  E-value: 1.89e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 182 YLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNFNFYIILLSLyGGLMVSLI 261
Cdd:PRK08676  209 FLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSGAAEQFSNVLIGL-GIFSIAVA 287

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 262 C---LRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLF 328
Cdd:PRK08676  288 AfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRF 357
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 87-368 4.55e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 58.44  E-value: 4.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  87 IFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLiLGWGYQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGG 166
Cdd:PRK12665  112 IFLPTYLILVAGVSNAFLAGDLFNLYVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGT 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 167 LCY----YLFFDLFGGVYFYLSMIL--AFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVfKCMVFYS 240
Cdd:PRK12665  191 LNMadlaVRLDELPSGTRTALFAVLlvAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRT-HTLLFPG 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 241 LNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISY 320
Cdd:PRK12665  270 GGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIE 349

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1275874107 321 ERLGSRLFILNKGMISYMPSMSLWWFmLSACNMSA-PPSLNLIGEISLL 368
Cdd:PRK12665  350 RQAGSSSLRRLGGLAKASPLLAVLFF-VPALNLGGiPPFSGFIGKVALL 397
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 53-360 1.18e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 57.03  E-value: 1.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  53 VDFFSWLMILLSFWICSLMIMSSCSIKFSFYFSDIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQ 132
Cdd:PRK08376   88 VDLFGAFMALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDT 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 133 PERVSASM-YLIFYTVAASLPLLSCILWMGGH----VGGLCYYLFFDLFGGVYFYLSMILA-FLIKLPMYMLHLWLPKAH 206
Cdd:PRK08376  168 WEAIEAGIkYMFVGSLASSMVLLGIALLYGQYgtlnMAYLAVKMSENPTVVAKIALALFIAgLAMKSGAVPVHMWLPDAY 247

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 207 VEAPISGSMILagVLLKLGG-YGLIRVfkCMVFYSLNFN------FYIIL--LSLYGGLMVSLIclrQLDLKMLIAYSSV 277
Cdd:PRK08376  248 PAAPSSISAML--LVIKQAGlYALARV--LFSIYGPAINlatvgwVIIILgcLTMFVGVAMAVV---QKDVKRLLAYHSV 320

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 278 SHMSLVISGL------FSMNIWGYYGSIIM------MLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPsMSLWW 345
Cdd:PRK08376  321 SQIGYMLLGLgvglaaLGDPAMASYGEIALaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMP-KTTIA 399

                         330
                  ....*....|....*
gi 1275874107 346 FMLSACNMSAPPSLN 360
Cdd:PRK08376  400 FLIGAAAIVGLPPFN 414
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 107-373 7.53e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 54.35  E-value: 7.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 107 NLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLScILWMGGHVGGL----CYYLFFDLFGGVYFY 182
Cdd:PRK12662  131 DVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIG-IGFLYAITGTLnmgdMFLIIQDLPTNRAIQ 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 183 LSMILAFL---IKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVF-----KCMVFYSLNFNFYIILLSLYG 254
Cdd:PRK12662  210 IGVLFIMVglfIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVydvfkANFVFTTLPFNNVFMILAALA 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 255 GLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGM 334
Cdd:PRK12662  290 IVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNL 369

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1275874107 335 ISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLIS 373
Cdd:PRK12662  370 WKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 54-399 1.47e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 53.41  E-value: 1.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  54 DFFSWLMILLSFWICSLMIM-SSCSI-----KFSFYFSDIFMLIvlmlmlSLYISFSVVNLFNFYLFFEFSLIPTLMLIL 127
Cdd:PRK07691   76 DMFAALLVLTSSIITFLVILySFQTIgiereRYYYYPSVLFMLA------GVNGAFLTGDIFNLFVFFEVMLMASYVLIV 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 128 GWGYQPERVSASMYLIFYTVAASLPLLScILWMGGHVGGL----CYYLFFDLFGG------VYFYLSMILaFLIKLPMYM 197
Cdd:PRK07691  150 IGGTKIQLRESIKYVLINVVSSAFFVVA-VAILYSVVGTLnmadISVKIAELSAGqtglitVVAILFLFV-FATKAGLFP 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 198 LHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNFNFYIIL-LSLYGGLMVSLICLRQLDLKMLIAYSS 276
Cdd:PRK07691  228 LYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTHYLILiLALLTIIFGVIGAVAYFDIKKIIIYNI 307

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 277 VSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSRLFILNKGMISYMPSMSlWWFMLSACNMSA- 355
Cdd:PRK07691  308 MIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAALSLAGi 386

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1275874107 356 PPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSL---YLYSF 399
Cdd:PRK07691  387 PPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVikiFLKGF 433
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 93-322 1.77e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 53.03  E-value: 1.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  93 LMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSCIL--WMGGHVGglcyy 170
Cdd:PRK07234  101 LILHGSVNAAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLvyQANGTFA----- 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 171 lFFDLFGGVYFYLSMI-LAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVfkcmvfySLNFNFYIIL 249
Cdd:PRK07234  176 -FSGLATADPEAFALIaLGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRC-------ALDVPGLDLI 247

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1275874107 250 LSLYGG---LMVSLICLRQLDLKMLIAYSSVSHMSLVISGlfsMNIWGYYGsiimmLGHGLCSSGLFCLSNISYER 322
Cdd:PRK07234  248 VRIFGVgtaLLGVLFALLEKDLKRMLAFSTISQLGFILAA---PLVGGLYA-----LAHGLVKSTLFLCAGALPSR 315
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-394 5.76e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 51.49  E-value: 5.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  92 VLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILgWGYQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCyyl 171
Cdd:PRK12663  114 ILLLMAGVIGSFLTGDLFNLYVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLN--- 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 172 FFDLF--------GGVYFYLSM--ILAFLIKLPMYMLHlWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFkCMVFYSL 241
Cdd:PRK12663  190 MAHIAmrlndmgdTATLTTIALlfLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVF-TLLFPQE 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 242 NFNFYIILLSLYGGLMV--SLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNIS 319
Cdd:PRK12663  268 RELLHPLLATMAAITMVigALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSL 347

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1275874107 320 YERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYYTMFFLFFLSFFSCVYSL 394
Cdd:PRK12663  348 VRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSL 422
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 107-287 1.54e-06

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 50.66  E-value: 1.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 107 NLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLFFD-----LFGGVYF 181
Cdd:PRK06521  134 DAFSFLVAWETMSLSSWFLVIANHREAEIRRAGFLYLLMAHAGALAILLAFGLLARESGSYDFAAMRAahlspFWASLVF 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 182 YLSMiLAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVfkcmvfyslNFNFY--------IILLSLY 253
Cdd:PRK06521  214 LLAL-FGFGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV---------VFDLLgapgwwwgVLVLALG 283

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1275874107 254 GGLMV--SLICLRQLDLKMLIAYSSVSHMSLVISGL 287
Cdd:PRK06521  284 AISAVlgVLYALAEHDLKRLLAYSTIENIGIIFVGL 319
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 86-377 1.89e-06

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 50.15  E-value: 1.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  86 DIFMLIVLMLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLIlGWGYQPERVSASM-YLIFYTVAASLPLLSCILwMGGHV 164
Cdd:PRK08377  108 DKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALT-AYNKTGEAAEASMkYIVLGGIGSSFFLIGVAL-IYGAT 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 165 GGLCYYLFFDLFGGVYFYL------SMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVFKCMVF 238
Cdd:PRK08377  186 GTLNMAHIAQLAGTIDPTVaqvglaLLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQN 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 239 YS--LNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLFCLS 316
Cdd:PRK08377  266 ANgwSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAV 345

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1275874107 317 NISYERLGSRLFILNKGMISYMPSMSLWWFMLSACNMSAPPSLNLIGEISLLNGLISYSYY 377
Cdd:PRK08377  346 GYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYT 406
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
108-233 1.40e-05

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 47.20  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 108 LFNFYLFFEFSLIPTLMLILGWGyQPERVSASM-YLIFYTVAASLpLLSCILWMGGHVGGLCYYLFFDLfGGVYFYLSMI 186
Cdd:PRK12668  115 LLTLFVFWELMAFTSTFLVWARG-TKAAVRAGFrYLLVHVLGGVL-LLAGILLHYAETGSFAFGAIAGL-GGTAAWLILI 191

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1275874107 187 lAFLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLLKLGGYGLIRVF 233
Cdd:PRK12668  192 -GFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARAF 237
PRK12650 PRK12650
DUF4040 family protein;
81-368 2.77e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.57  E-value: 2.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  81 SFY-FSDIFMLIVLMLMLS-----LYISFSVVNLFNFylffefsliptlMLILGWGyqPERVSASMYLIFYTVAASLPLL 154
Cdd:PRK12650  111 SFYlLMTAFMAAMLLLVLAddvvvLFVAWELVSLASF------------FLIARSG--SGGEAGSIRTLILTFFGGLTLL 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 155 SCILWMGGHVG--GLCYYLFFDLFGGvYFYLSMILAFLI------KLPMYMLHLWLPKAHVEA-PISGSMILAGVLlKLG 225
Cdd:PRK12650  177 AAVAIAATQTGttSLSGILHSDVWAE-KPGLTTVVAVLIavaaftKSAQFPFHFWLPEAMAAItPVSAFLHAAAVV-KAG 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 226 GYGLIRvFKCMVFYSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGH 305
Cdd:PRK12650  255 IYLLLR-FSPVFHDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAH 333

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1275874107 306 GLCSSGLFCLSNISYERLGSRLFILNKGMISYMPsMSLWWFMLSACNMSA-PPSLNLIGEISLL 368
Cdd:PRK12650  334 ALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMP-FTFVSVTIAALSMAAvPPLFGFVSKEGML 396
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-102 4.41e-05

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 42.51  E-value: 4.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107   1 MLMFIFSLLFMIPLSLLN------SWWAVQFWFFFLSFMFIFFGDFSFFVTNLGFGMGVDFFSWLMILLSFWICSLMIMS 74
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSkpkwlwTTSTLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1275874107  75 SCSI--KFSFYFSDIFMLIVLMLMLSLYIS 102
Cdd:pfam01059  81 SQKHlkSEPNNRQRTFIFLLILLQLFLILT 110
PRK12646 PRK12646
DUF4040 family protein;
182-360 6.52e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 42.05  E-value: 6.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 182 YLSMILAFLI----KLPMYMLHLWLPKAhVEAPISGSMILAGVLLKLGGYGLIRVFKCMVFYSLNFNFYIILLSLYGGLM 257
Cdd:PRK12646  209 FIPMIFMFLLgaftKSAQFPFHIWLPRA-MAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNMYIYIVTFVGLITMLF 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 258 VSLICLRQLDLKMLIAYSSVSHMSLVIS--------------GLFSMNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERL 323
Cdd:PRK12646  288 GSITALKQWDLKGILAYSTISQLGMIMAmvgigggyaqhqqdAIASIYVFVLFAALFHLMNHAIFKCALFMGVGIIDHEA 367

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1275874107 324 GSRLFILNKGMISYMPSMSLwWFMLSACNMSAPPSLN 360
Cdd:PRK12646  368 GTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVPFLN 403
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
178-313 1.53e-03

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 40.57  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 178 GVYFYLSMILA-FLIKLPMYMLHLWLPKAHVEAPISGSMILAGVLlKLGGYG-LIRVFKcMVFYSLNFNFYIILLSLYGG 255
Cdd:PRK05777  202 LLLFGLVFLLVgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAvLLRLLV-VAFGGLSEDWQQVLAIIAIA 279

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 256 LMV--SLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMMLGHGLCSSGLF 313
Cdd:PRK05777  280 SMLvgNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 83-278 1.86e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.67  E-value: 1.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  83 YFSDIFMLIVLMLMLSLyisfsVVNLFNFYLFFEFSLIPTLMLIlgwGYQPERVSA---SMYLIFYTVAASLPLLSCILW 159
Cdd:PRK12647   97 FYSYILLFMASMLGLVL-----SDNLITLFVFWELTSITSFLLI---GFNHEREAArraALQALLVTGGGGLALLAGLIL 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 160 MGGHVGGLCYYLFF---DLFGGVYFYLSMILAFLI----KLPMYMLHLWLPKAhVEAPI-------SGSMILAGVLL--- 222
Cdd:PRK12647  169 LGNVTGTYSLSELLasgDVIREHPLYLAILLLVLGgaftKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGIYLlar 247

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1275874107 223 ---KLGGYGLirvfkcmvfyslnfnfYIILLSLYGGL-MV--SLICLRQLDLKMLIAYSSVS 278
Cdd:PRK12647  248 lnpVLGGTPL----------------WQTILPLFGGLtMLtgALLAVRQTDLKLILAYSTVS 293
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 56-326 3.17e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.80  E-value: 3.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  56 FSWLMILLSFWICSLMIMSSCSIKFSFYFsdifmliVLMLMLSLYISFSVvNLFNFYLFFEFSLIPTLMLILGWGYQPER 135
Cdd:PRK06589   94 FLWICALLYTPKYLAINNIDSSSRFLFFF-------NLTILIGVLIALSS-DLFTMFVCYELLTISTAFLIGHTRNNISL 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 136 VSASMYLIFYTVAASLPLLSCILWMGGHVGGLCYYLFFDLFGGVYFYLSMILAFLI-KLPMYMLHLWLPKAHVEAPISGS 214
Cdd:PRK06589  166 SGGYKYLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIaKTAIFPVHSWLPAAMVAHYPVSA 245

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 215 MILAGVLLKLGGYGLIRVFKCMVFYS-----LNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFS 289
Cdd:PRK06589  246 LLHAVIVVKTGLFCIYKILLYIFGLSylqriFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFI 325

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1275874107 290 MNIWGYYGSIIMMLGHGLCSSGLFCLSNISYERLGSR 326
Cdd:PRK06589  326 LTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKED 362
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 82-346 4.91e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 39.19  E-value: 4.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  82 FYFsdiFMLIVLMLMLSLYISfsvVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASMYLIFyTVAASLPLLSCILWMG 161
Cdd:PRK06525  115 YYA---FLLLFIGAMAGLVYS---STLLGLLLFFEITGLCSWALISYYQSPKALRSALKALLI-THIGSLGLYLAAATLF 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 162 GHVGGLCYYLFFDLFGG--VYFYLSMILAFLIKLPMYMLHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGLIRVFKCMVF 238
Cdd:PRK06525  188 LQTGTFALSALSGLHGSlkYLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGP 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 239 YSLNFNFYIILLSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLfSMNIWG----YYGSIIMMLGHGLcSSGLFC 314
Cdd:PRK06525  267 IPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGL-SLAILGsrlaLEGSIAYIFNHAF-AKSLFF 344

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1275874107 315 LS--NISYErLGSRLFILNKGMISYMPSMSLWWF 346
Cdd:PRK06525  345 LVagALSYS-CGTRLLPRLRGVLKKLPLVGVGFC 377
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 94-302 9.02e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 38.09  E-value: 9.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107  94 MLMLSLYISFSVVNLFNFYLFFEFSLIPTLMLILGWGYQPERVSASM-YLIFYTVAASLPLLSCILWMGGHVGGLCYYLF 172
Cdd:MTH00196    1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLkYFVLGALSSGLFLFGCALLCGTTGGLHLSYIN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275874107 173 FDLFGGVYF--------YLSMILAFLIKLPMYMLHLWLPKAHVEAPISGSMILAgVLLKLGgyglirVFKCMVFYSLNFN 244
Cdd:MTH00196   81 LVLNSGQSFssvsvpigYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLA-IVPKLG------IFSILVSIGLNVN 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1275874107 245 FYIILlSLYGGLMVSLICLRQLDLKMLIAYSSVSHMSLVISGLFSMNIWGYYGSIIMM 302
Cdd:MTH00196  154 ILLIG-GLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYL 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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