|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
8-352 |
1.18e-85 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 263.27 E-value: 1.18e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 8 EFKESIVSLS-QTGRSANSLAKEYNVSVSTVTKWIKQ-------ADPNNTKVLSSNERALI----KENKRLKEELDIFKT 75
Cdd:NF033516 1 EFKLEAVREVlEGGKSVAEVARELGISPSTLYRWRKKyrgggeaADAGRLKELLTPEEEENrrlkRELAELRLENEILKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 76 SGGAHGKKLIIkgrALVLEvvnanLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQEVLTAWLRYPM-YGY 154
Cdd:NF033516 81 ARKLLRPAVKY---ALIDA-----LRGEYSVRRACRVLGVSRSTYYYWRKRPPSRRAPDDAELRARIREIFEESRGrYGY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 155 PRLTILLNQQsDIHVSQRLVYQQMCELGIRSRMVKRINKPTTQTDYDQR--PNLIKQLTDQSG---ILLTDITYIPLNHT 229
Cdd:NF033516 153 RRITALLRRE-GIRVNHKRVYRLMRELGLLARRRRKRRPYTTDSGHVHPvaPNLLNRQFTATRpnqVWVTDITYIRTAEG 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 230 WCYLASV---YNpvtRRVIAYQLNTQMTKELATNVITQVMAQAVKPQ--IIHSDMGSQYTSDLFENTLSKYGIKHSYSRK 304
Cdd:NF033516 232 WLYLAVVldlFS---REIVGWSVSTSMSAELVLDALEMAIEWRGKPEglILHSDNGSQYTSKAYREWLKEHGITQSMSRP 308
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1275690772 305 GQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYNSDRI 352
Cdd:NF033516 309 GNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERP 356
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
56-352 |
1.93e-63 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 204.23 E-value: 1.93e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 56 ERALIKENKRLKEELDifktsggahgKKLIIKGRALVLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRR 135
Cdd:COG2801 1 ELAEEEELRKEEELLR----------RLLLLLRLLLLRRRVLRRVSRRRRRLLRLLRRRRARSRRRRRLRRPRSYRADED 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 136 HLIKQEVLTAWLRYPMYGYPRLTILLNQQSdIHVSQRLVYQQMCELGIRSRMVKRINKPTTQ-TDYDQRPNLIKQLT--D 212
Cdd:COG2801 71 AELLERIKEIFAESPRYGYRRITAELRREG-IAVNRKRVRRLMRELGLQARRRRKKKYTTYSgHGGPIAPNLLFTATapN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 213 QsgILLTDITYIPLNHTWCYLASV---YNpvtRRVIAYQLNTQMTKELATNVITQVMAQ--AVKPQIIHSDMGSQYTSDL 287
Cdd:COG2801 150 Q--VWVTDITYIPTAEGWLYLAAVidlFS---REIVGWSVSDSMDAELVVDALEMAIERrgPPKPLILHSDNGSQYTSKA 224
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1275690772 288 FENTLSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYNSDRI 352
Cdd:COG2801 225 YQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERP 289
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
113-352 |
3.98e-38 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 137.69 E-value: 3.98e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 113 LKIPRSTYYDYLHwQPSRTERRR------HLIKQEVLTAW-LRYPMYGYPRLTILLNQQSdIHVSQRLVYQQMCELGIRS 185
Cdd:PHA02517 1 LGIAPSTYYRCQQ-QRHHPDKRRaraqhdDWLKSEILRVYdENHQVYGVRKVWRQLNREG-IRVARCTVGRLMKELGLAG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 186 RMVKRINKPTTQTDYDQRPNLIKQ---LTDQSGILLTDITYIPLNHTWCYLASVYNPVTRRVIAYQLNTQMTKELATNVI 262
Cdd:PHA02517 79 VLRGKKVRTTISRKAVAAPDRVNRqfvATRPNQLWVADFTYVSTWQGWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDAL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 263 TQVMAQAVKPQ--IIHSDMGSQYTSDLFENTLSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGI 340
Cdd:PHA02517 159 EQALWARGRPGglIHHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELAT 238
|
250
....*....|..
gi 1275690772 341 DNYIRWYNSDRI 352
Cdd:PHA02517 239 LEWVAWYNNRRL 250
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
215-307 |
2.92e-17 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 76.20 E-value: 2.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 215 GILLTDITYIPL--NHTWCYLASVYNPVTRRVIAYQLNTQMTKELATNVITQVMA-QAVKPQIIHSDMGSQYTSDLFENT 291
Cdd:pfam00665 3 QLWQGDFTYIRIpgGGGKLYLLVIVDDFSREILAWALSSEMDAELVLDALERAIAfRGGVPLIIHSDNGSEYTSKAFREF 82
|
90
....*....|....*.
gi 1275690772 292 LSKYGIKHSYSRKGQP 307
Cdd:pfam00665 83 LKDLGIKPSFSRPGNP 98
|
|
| transpos_IS6 |
NF033587 |
IS6 family transposase; |
220-348 |
5.52e-04 |
|
IS6 family transposase;
Pssm-ID: 411209 [Multi-domain] Cd Length: 203 Bit Score: 40.63 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 220 DITYIPLNHTWCYLASVYNPVTrRVIAYQLNTQMTKELATNVITQVMAQA-VKPQIIHSDMGSQYT---SDLFENTLSKY 295
Cdd:NF033587 73 DETVIKINGKWYYLYRAVDKEG-ETLDFLLSPRRDTDAAKRFLRKLLKKHdGSPRVILTDKAPSYPaalRRLGLEGRLPR 151
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1275690772 296 GIKHsYSRKGQpgdNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYN 348
Cdd:NF033587 152 RIEH-RQRKYL---NNLIEQDHRRTKRFINSMLGFKSFRTARRTLAGFEAMYN 200
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
8-352 |
1.18e-85 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 263.27 E-value: 1.18e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 8 EFKESIVSLS-QTGRSANSLAKEYNVSVSTVTKWIKQ-------ADPNNTKVLSSNERALI----KENKRLKEELDIFKT 75
Cdd:NF033516 1 EFKLEAVREVlEGGKSVAEVARELGISPSTLYRWRKKyrgggeaADAGRLKELLTPEEEENrrlkRELAELRLENEILKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 76 SGGAHGKKLIIkgrALVLEvvnanLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQEVLTAWLRYPM-YGY 154
Cdd:NF033516 81 ARKLLRPAVKY---ALIDA-----LRGEYSVRRACRVLGVSRSTYYYWRKRPPSRRAPDDAELRARIREIFEESRGrYGY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 155 PRLTILLNQQsDIHVSQRLVYQQMCELGIRSRMVKRINKPTTQTDYDQR--PNLIKQLTDQSG---ILLTDITYIPLNHT 229
Cdd:NF033516 153 RRITALLRRE-GIRVNHKRVYRLMRELGLLARRRRKRRPYTTDSGHVHPvaPNLLNRQFTATRpnqVWVTDITYIRTAEG 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 230 WCYLASV---YNpvtRRVIAYQLNTQMTKELATNVITQVMAQAVKPQ--IIHSDMGSQYTSDLFENTLSKYGIKHSYSRK 304
Cdd:NF033516 232 WLYLAVVldlFS---REIVGWSVSTSMSAELVLDALEMAIEWRGKPEglILHSDNGSQYTSKAYREWLKEHGITQSMSRP 308
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1275690772 305 GQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYNSDRI 352
Cdd:NF033516 309 GNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERP 356
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
56-352 |
1.93e-63 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 204.23 E-value: 1.93e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 56 ERALIKENKRLKEELDifktsggahgKKLIIKGRALVLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRR 135
Cdd:COG2801 1 ELAEEEELRKEEELLR----------RLLLLLRLLLLRRRVLRRVSRRRRRLLRLLRRRRARSRRRRRLRRPRSYRADED 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 136 HLIKQEVLTAWLRYPMYGYPRLTILLNQQSdIHVSQRLVYQQMCELGIRSRMVKRINKPTTQ-TDYDQRPNLIKQLT--D 212
Cdd:COG2801 71 AELLERIKEIFAESPRYGYRRITAELRREG-IAVNRKRVRRLMRELGLQARRRRKKKYTTYSgHGGPIAPNLLFTATapN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 213 QsgILLTDITYIPLNHTWCYLASV---YNpvtRRVIAYQLNTQMTKELATNVITQVMAQ--AVKPQIIHSDMGSQYTSDL 287
Cdd:COG2801 150 Q--VWVTDITYIPTAEGWLYLAAVidlFS---REIVGWSVSDSMDAELVVDALEMAIERrgPPKPLILHSDNGSQYTSKA 224
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1275690772 288 FENTLSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYNSDRI 352
Cdd:COG2801 225 YQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERP 289
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
113-352 |
3.98e-38 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 137.69 E-value: 3.98e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 113 LKIPRSTYYDYLHwQPSRTERRR------HLIKQEVLTAW-LRYPMYGYPRLTILLNQQSdIHVSQRLVYQQMCELGIRS 185
Cdd:PHA02517 1 LGIAPSTYYRCQQ-QRHHPDKRRaraqhdDWLKSEILRVYdENHQVYGVRKVWRQLNREG-IRVARCTVGRLMKELGLAG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 186 RMVKRINKPTTQTDYDQRPNLIKQ---LTDQSGILLTDITYIPLNHTWCYLASVYNPVTRRVIAYQLNTQMTKELATNVI 262
Cdd:PHA02517 79 VLRGKKVRTTISRKAVAAPDRVNRqfvATRPNQLWVADFTYVSTWQGWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDAL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 263 TQVMAQAVKPQ--IIHSDMGSQYTSDLFENTLSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGI 340
Cdd:PHA02517 159 EQALWARGRPGglIHHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELAT 238
|
250
....*....|..
gi 1275690772 341 DNYIRWYNSDRI 352
Cdd:PHA02517 239 LEWVAWYNNRRL 250
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
215-307 |
2.92e-17 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 76.20 E-value: 2.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 215 GILLTDITYIPL--NHTWCYLASVYNPVTRRVIAYQLNTQMTKELATNVITQVMA-QAVKPQIIHSDMGSQYTSDLFENT 291
Cdd:pfam00665 3 QLWQGDFTYIRIpgGGGKLYLLVIVDDFSREILAWALSSEMDAELVLDALERAIAfRGGVPLIIHSDNGSEYTSKAFREF 82
|
90
....*....|....*.
gi 1275690772 292 LSKYGIKHSYSRKGQP 307
Cdd:pfam00665 83 LKDLGIKPSFSRPGNP 98
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
295-351 |
9.57e-15 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 68.01 E-value: 9.57e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1275690772 295 YGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYNSDR 351
Cdd:pfam13683 1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTER 57
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
4-74 |
7.85e-13 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 63.79 E-value: 7.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 4 KYSNEFKESIVSLS-QTGRSANSLAKEYNVSVSTVTKWIKQADPNNTKVLSSNE---------RALIKENKRLKEELDIF 73
Cdd:COG2963 7 RYSPEFKAEAVRLVlEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGrttpeqaeiRRLRKELRRLEMENDIL 86
|
.
gi 1275690772 74 K 74
Cdd:COG2963 87 K 87
|
|
| HTH_21 |
pfam13276 |
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding ... |
132-190 |
1.03e-08 |
|
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.
Pssm-ID: 463824 [Multi-domain] Cd Length: 60 Bit Score: 51.03 E-value: 1.03e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 132 ERRRHLIKQeVLTAWLR-YPMYGYPRLTILLNQQSDIHVSQRLVYQQMCELGIRSRMVKR 190
Cdd:pfam13276 1 ELEDELLEA-IREIFEEsRGTYGYRRITAELRREGGIRVNRKRVARLMRELGLRARRRRK 59
|
|
| rve_2 |
pfam13333 |
Integrase core domain; |
314-352 |
1.75e-07 |
|
Integrase core domain;
Pssm-ID: 372570 [Multi-domain] Cd Length: 52 Bit Score: 47.26 E-value: 1.75e-07
10 20 30
....*....|....*....|....*....|....*....
gi 1275690772 314 ESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYNSDRI 352
Cdd:pfam13333 1 ESFFGSLKTEMVYGEHFKTLEELELAIFDYIEWYNNKRL 39
|
|
| HTH_Tnp_1 |
pfam01527 |
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ... |
4-70 |
1.40e-05 |
|
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.
Pssm-ID: 426308 [Multi-domain] Cd Length: 75 Bit Score: 42.73 E-value: 1.40e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1275690772 4 KYSNEFKESIVSLS-QTGRSANSLAKEYNVSVSTVTKWIKQ------ADPNNTKVlssneRALIKENKRLKEEL 70
Cdd:pfam01527 6 RFSEEFKLRAVKEVlEPGRTVKEVARRHGVSPNTLYQWRRQyeggmgASPARPRL-----TALEEENRRLKREL 74
|
|
| Rve |
COG3316 |
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons]; |
220-348 |
2.09e-04 |
|
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
Pssm-ID: 442545 [Multi-domain] Cd Length: 235 Bit Score: 42.20 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 220 DITYIPLNHTWCYLASVYNPVTRrVIAYQLNTQMTKELATNVITQVMAQA-VKPQIIHSDMGSQYTSDL-FENTLSKYGI 297
Cdd:COG3316 76 DETYIKIKGKWHYLYRAVDAEGR-ILDFLLSPRRDTKAAKRFLRKALKKYgLKPRVIVTDKLPSYGAALrELKPEGGLGV 154
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1275690772 298 KHSYSRkgqpGDNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYN 348
Cdd:COG3316 155 EHRQVK----GLNNRIERDHRTLKRRERPMRGFKSFRTAQRFLSGFEAYYN 201
|
|
| transpos_IS6 |
NF033587 |
IS6 family transposase; |
220-348 |
5.52e-04 |
|
IS6 family transposase;
Pssm-ID: 411209 [Multi-domain] Cd Length: 203 Bit Score: 40.63 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1275690772 220 DITYIPLNHTWCYLASVYNPVTrRVIAYQLNTQMTKELATNVITQVMAQA-VKPQIIHSDMGSQYT---SDLFENTLSKY 295
Cdd:NF033587 73 DETVIKINGKWYYLYRAVDKEG-ETLDFLLSPRRDTDAAKRFLRKLLKKHdGSPRVILTDKAPSYPaalRRLGLEGRLPR 151
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1275690772 296 GIKHsYSRKGQpgdNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYN 348
Cdd:NF033587 152 RIEH-RQRKYL---NNLIEQDHRRTKRFINSMLGFKSFRTARRTLAGFEAMYN 200
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
9-43 |
1.42e-03 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 36.42 E-value: 1.42e-03
10 20 30
....*....|....*....|....*....|....*
gi 1275690772 9 FKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQ 43
Cdd:pfam13518 1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWIRR 35
|
|
|