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Conserved domains on  [gi|1273810916|gb|ATQ39540|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Betiscoides sp. B70_ko_30]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-336 6.85e-125

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 369.86  E-value: 6.85e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 161 SFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 241 ISSMSISNNLISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLGYISCKSFDYGWGEMMGGQGLYGFFIYMISYMQGWYD 320
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                         330
                  ....*....|....*.
gi 1273810916 321 SNFKIYLVTFIFWMFI 336
Cdd:MTH00165  552 NNLKIYLLSFLLWMII 567
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-336 6.85e-125

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 369.86  E-value: 6.85e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 161 SFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 241 ISSMSISNNLISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLGYISCKSFDYGWGEMMGGQGLYGFFIYMISYMQGWYD 320
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                         330
                  ....*....|....*.
gi 1273810916 321 SNFKIYLVTFIFWMFI 336
Cdd:MTH00165  552 NNLKIYLLSFLLWMII 567
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 5.58e-45

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 161.86  E-value: 5.58e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPML-DNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:COG1009   263 RLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWVNCLIFFLYFISTGLTA 158
Cdd:COG1009   343 GAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 159 AYSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWI---------IFPIPISVSLPYYLKFLTII 229
Cdd:COG1009   422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                         250
                  ....*....|..
gi 1273810916 230 VVILGSYLGYLI 241
Cdd:COG1009   502 LSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 12-241 5.49e-37

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 140.11  E-value: 5.49e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDS 91
Cdd:TIGR01974 277 LYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHE 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSG 171
Cdd:TIGR01974 357 QDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHG 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 172 DNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPI-----------PISVSLPYYLKFLTIIVVILGSYLGYL 240
Cdd:TIGR01974 437 KERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsaepaLEHHHVPALEIWSPTAVAILGILLAYL 516


                  .
gi 1273810916 241 I 241
Cdd:TIGR01974 517 L 517
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-336 8.74e-36

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 127.67  E-value: 8.74e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVILGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 240 LISSMSISNNlISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLGYISCKSFDYGWGEMMGGQGLYGFFIYMISYMQGWY 319
Cdd:pfam06455  81 ELSNLSNKQL-KKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|....*..
gi 1273810916 320 DSNFKIYLVTFIFWMFI 336
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLL 176
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-336 6.85e-125

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 369.86  E-value: 6.85e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 161 SFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 241 ISSMSISNNLISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLGYISCKSFDYGWGEMMGGQGLYGFFIYMISYMQGWYD 320
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                         330
                  ....*....|....*.
gi 1273810916 321 SNFKIYLVTFIFWMFI 336
Cdd:MTH00165  552 NNLKIYLLSFLLWMII 567
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-336 1.22e-83

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 263.24  E-value: 1.22e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLD-NYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00151  228 RFFPFLSsSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFL 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAA 159
Cdd:MTH00151  308 CAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTAL 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVIlgsyLGY 239
Cdd:MTH00151  388 YSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVIL----LGL 463

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 240 LISSMSISNNLISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLGYISCKSFDYGWGEMMGGQGLYGFFIYMISYMQGWY 319
Cdd:MTH00151  464 FLSFGFWDSGFSSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWP 543

                         330
                  ....*....|....*..
gi 1273810916 320 DSNFKIYLVTFIFWMFI 336
Cdd:MTH00151  544 VKWFNFFIGLILLLVLF 560
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-327 7.05e-82

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 258.93  E-value: 7.05e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDN-YGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00207  231 RFYPFLSStYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFV 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAA 159
Cdd:MTH00207  311 CAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAA 390

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVILGSYLGY 239
Cdd:MTH00207  391 YSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAW 470

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 240 LISSMSISNNLISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLGYISCKSFDYGWGEMMGGQGLYGFFIYMISYMQGWY 319
Cdd:MTH00207  471 LFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMFSRSSNNVMKLQ 550


                  ....*...
gi 1273810916 320 DSNFKIYL 327
Cdd:MTH00207  551 KNIPNNYL 558
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-336 6.63e-81

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 256.50  E-value: 6.63e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYG-FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00209  227 RFFPSLFSSPfFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFI 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAA 159
Cdd:MTH00209  307 CAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAA 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVILGSYLGY 239
Cdd:MTH00209  387 YSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY 466

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 240 lissMSISNNLISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLGYISCKSFDYGWGEMMGGQGLYGFFIYMISYMQGWY 319
Cdd:MTH00209  467 ----MVLKKNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQ 542

                         330
                  ....*....|....*..
gi 1273810916 320 DSNFKIYLVTFIFWMFI 336
Cdd:MTH00209  543 NNSLKLFVTFMMLILLG 559
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-336 2.43e-64

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 213.66  E-value: 2.43e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPM-LDNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00211  256 RLSPLfQNNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFM 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAA 159
Cdd:MTH00211  336 CSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAA 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPI-PISVSLPYYLKFLTIIVVILGSYLG 238
Cdd:MTH00211  416 YSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEkPEILSLPFLLKLMPLLVTIVGLLLG 495

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 239 ylissMSISNNLISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLG-YISCKSFDYGWGEMMGGQGLYGFFIYMISYMQG 317
Cdd:MTH00211  496 -----LELVNLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGqTLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTS 570

                         330
                  ....*....|....*....
gi 1273810916 318 WYDSNFKIYLVTFIFWMFI 336
Cdd:MTH00211  571 PQQGLIKSYLALLLLSLLL 589
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-336 8.55e-58

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 197.12  E-value: 8.55e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYG-FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00208  288 RTSPLISNSPwFLSLCLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAA 159
Cdd:MTH00208  368 CSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAV 447

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPiSVSLPYYLKFLTIIVVILGSylgy 239
Cdd:MTH00208  448 YSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGA---- 522

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 240 LISSMSISNNLISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLG-YISCKSFDYGWGEMMGGQGLYGFFIYMISYMQGW 318
Cdd:MTH00208  523 AFSFSFLLSLSSNPINSNFFSFLSNQWFFVNISHSIIISFSFFTSlFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLT 602

                         330
                  ....*....|....*...
gi 1273810916 319 YDSNFKIYLVTFIFWMFI 336
Cdd:MTH00208  603 QTGYIKQYLLSSTLLFLL 620
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 16-336 5.98e-55

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 188.83  E-value: 5.98e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  16 LIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 95
Cdd:MTH00004  277 LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIR 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  96 FMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNY 175
Cdd:MTH00004  357 KMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 176 YSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPIS-VSLPYYLKFLTIIVVILGSYLGYLISSMsiSNNLISLD 254
Cdd:MTH00004  437 PPTTPINENTPTIINPITRLALGSILAGLLISSTILPTKTPpMTMPTTTKLAALIVTILGILLALELSNM--TTTLTPPK 514

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 255 LLSLISFIGSMWFMPFLSTKFISYFPLKLGY-ISCKSFDYGWGEMMGGQGLYGFFIYMISYMQGWYDSNFKIYLVTFIFW 333
Cdd:MTH00004  515 QNTLHNFSNQLAFFNPLTHRLLPMTLLKSSQkIATHLIDLSWLEKMGPKGLANLQLTASKTLTTLQKGLIKNYLTSFALT 594


                  ...
gi 1273810916 334 MFI 336
Cdd:MTH00004  595 ILL 597
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-332 2.40e-50

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 176.64  E-value: 2.40e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPML-DNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00066  259 RFHPLLeNNQTALTICLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFL 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAA 159
Cdd:MTH00066  339 CSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAV 418

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPI-PISVSLPYYLKFLTIIVVILGSYLG 238
Cdd:MTH00066  419 YSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIA 498

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 239 YLISSMSISNNlislDLLSLISFIGSMWFMPFLSTKFISYFPLKLGY-ISCKSFDYGWGEMMGGQGLYGFFIYMISYMQG 317
Cdd:MTH00066  499 LDLAKITSKTT----PKTKMHSFSNLLAFFPTIIHRLSPKTNLNSGQnIATHLTDMTWYEKSGPKGLTNQQLPPIKTITN 574

                         330
                  ....*....|....*
gi 1273810916 318 WYDSNFKIYLVTFIF 332
Cdd:MTH00066  575 IQTGLIKTYLTLFLI 589
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-245 6.43e-50

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 175.43  E-value: 6.43e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFG-SFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00108  262 RFHPLMENNKTIqTLTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFM 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAA 159
Cdd:MTH00108  342 CSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPIS-VSLPYYLKFLTIIVVILGSYLG 238
Cdd:MTH00108  422 YSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPqMTMPLYLKLTALAVTILGFILA 501


                  ....*..
gi 1273810916 239 YLISSMS 245
Cdd:MTH00108  502 LELNLLT 508
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-169 2.36e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 165.78  E-value: 2.36e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFGSFL-LIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00137  267 RLSPLMENNQTALTTcLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFL 346

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAA 159
Cdd:MTH00137  347 CSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAV 426

                         170
                  ....*....|.
gi 1273810916 160 YSFRL-FYYSM 169
Cdd:MTH00137  427 YSLRVvFFVSM 437
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 5.58e-45

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 161.86  E-value: 5.58e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPML-DNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:COG1009   263 RLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWVNCLIFFLYFISTGLTA 158
Cdd:COG1009   343 GAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 159 AYSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWI---------IFPIPISVSLPYYLKFLTII 229
Cdd:COG1009   422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                         250
                  ....*....|..
gi 1273810916 230 VVILGSYLGYLI 241
Cdd:COG1009   502 LSLLGIALGYLL 513
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-309 7.24e-39

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 145.22  E-value: 7.24e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFGSFLL-IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00020  262 RSSPLFEQAPLALIIVtIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFL 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAA 159
Cdd:MTH00020  342 SAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAF 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 160 YSFRLFYYSMSGDNNYYSSYSFDD--SSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVS--LPYYLKFLTIIVVILGS 235
Cdd:MTH00020  422 YSIRLIYLTFLSNTNLKKAVFFHLheGDWNLLLPLGILALGSIFVGYLAKEMIWSFQITLPpiVPLSIKLLPVFLSLGGI 501

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1273810916 236 YLGYLISSMSIS--NNLISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLGY-ISCKSFDYGWGEMMGGQGLYGFFI 309
Cdd:MTH00020  502 GLVIILYFYSSKtfRVPFSFIGRNSYTFLGSAWQFNYILNYFLIKKIWKGGHlISYRTIDKGVLELVGPKGISNFLI 578
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 17-309 7.90e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 145.15  E-value: 7.90e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  17 IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 96
Cdd:MTH00210  280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRK 359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  97 MGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNYY 176
Cdd:MTH00210  360 MGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSK 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 177 SSYSFDD--SSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVILGSYLGYLISSMSISNNLISLD 254
Cdd:MTH00210  440 KEVFIGVheSSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAFVIYNSMVFLIKISRR 519

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1273810916 255 LLSLIS------FIGSMWFMPFLSTKFISYFPLKLGY-ISCKSFDYGWGEMMGGQGLYGFFI 309
Cdd:MTH00210  520 GVSIRLyhviytFLNSAWQFNYVINHFIVKNIWKFGHlITYRIIDRGLLEIIGPRGISKVLI 581
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 12-241 5.49e-37

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 140.11  E-value: 5.49e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDS 91
Cdd:TIGR01974 277 LYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHE 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSG 171
Cdd:TIGR01974 357 QDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHG 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 172 DNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPI-----------PISVSLPYYLKFLTIIVVILGSYLGYL 240
Cdd:TIGR01974 437 KERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsaepaLEHHHVPALEIWSPTAVAILGILLAYL 516


                  .
gi 1273810916 241 I 241
Cdd:TIGR01974 517 L 517
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 14-165 1.74e-36

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 138.75  E-value: 1.74e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  14 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 93
Cdd:PRK06590  283 FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 362

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1273810916  94 IRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElVCLSWVNCLIFFLYFISTGLTAAYSFRLF 165
Cdd:PRK06590  363 IRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRLI 433
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-336 8.74e-36

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 127.67  E-value: 8.74e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVILGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 240 LISSMSISNNlISLDLLSLISFIGSMWFMPFLSTKFISYFPLKLGYISCKSFDYGWGEMMGGQGLYGFFIYMISYMQGWY 319
Cdd:pfam06455  81 ELSNLSNKQL-KKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|....*..
gi 1273810916 320 DSNFKIYLVTFIFWMFI 336
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLL 176
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
12-172 3.00e-33

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 129.76  E-value: 3.00e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKD- 90
Cdd:PRK07376  291 MTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEv 370

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  91 -------SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSwvNCLIFFLYFISTGLTAAYSFR 163
Cdd:PRK07376  371 vghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFR 448


                  ....*....
gi 1273810916 164 LFYYSMSGD 172
Cdd:PRK07376  449 MYFLTFEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 14-153 5.66e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 5.66e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  14 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHNLKD 90
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810916  91 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFIS 153
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 13-165 6.63e-25

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 105.36  E-value: 6.63e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  13 SFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNL---- 88
Cdd:CHL00025  292 NLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepiv 371

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  89 ----KDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElvcLSWVNCLIF-FLYFISTGLTAAYSFR 163
Cdd:CHL00025  372 gyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILN---DSWLYSPIFaIIAWSTAGLTAFYMFR 448


                  ..
gi 1273810916 164 LF 165
Cdd:CHL00025  449 IY 450
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 11-167 2.28e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 99.84  E-value: 2.28e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL---AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG0651   271 LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERA 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  88 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVcLSWVNCLIFFLYFISTGLTAAYSFRLFYY 167
Cdd:COG0651   351 TG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 17-136 5.30e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 99.65  E-value: 5.30e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  17 IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GYPKLAFFHLLTHALFKALLFMCAGSMIHNLK-DSQDI 94
Cdd:MTH00032  294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1273810916  95 RFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEL 136
Cdd:MTH00032  374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
PRK12650 PRK12650
DUF4040 family protein;
1-164 2.17e-20

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 92.03  E-value: 2.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFGSFLLII-GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKAL 76
Cdd:PRK12650  260 RFSPVFHDVAVWNWLLIIvGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVVHTLAHALFKSS 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  77 LFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGL 156
Cdd:PRK12650  340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAAL 418

                         170
                  ....*....|..
gi 1273810916 157 TA----AYSFRL 164
Cdd:PRK12650  419 GAvftfAYSARL 430
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-167 1.49e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 89.17  E-value: 1.49e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  10 GFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIH 86
Cdd:PRK08375  269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  87 NLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILELVCLSWVNCLIFFLyfISTGLTAAYSFRLF 165
Cdd:PRK08375  349 TYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIW 425


                  ..
gi 1273810916 166 YY 167
Cdd:PRK08375  426 YR 427
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-233 1.49e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 89.21  E-value: 1.49e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00095  216 NFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQ 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAY 160
Cdd:MTH00095  296 VGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGY 375

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810916 161 SFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMVglliiaVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVIL 233
Cdd:MTH00095  376 SYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLV------FFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFYLF 442
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 15-166 2.73e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 83.05  E-value: 2.73e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHL---LTHALFKALLFMCAGSMIHNlKDS 91
Cdd:PRK12644  270 VLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS-TGT 348

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810916  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELV----CLSWVNCLIFFLYFISTGLTAAYSFRLFY 166
Cdd:PRK12644  349 RDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLRFLW 427
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 15-135 1.96e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 80.35  E-value: 1.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHNlKDS 91
Cdd:PRK12647  262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSElaiKAAVLFLVAHSLYKGALFMVAGIIDHE-TGT 340

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810916  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12647  341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 18-163 2.05e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 80.23  E-value: 2.05e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  18 IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK---LAFFHLLTHALFKALLFMCAGSMIHNlKDSQDI 94
Cdd:PRK12648  277 AGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLaavAAIFHIINHATFKASLFMAAGIIDHE-TGTRDM 355

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810916  95 RFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILELVCLSWVNCLIFFLYFISTGLTAAYSFR 163
Cdd:PRK12648  356 RRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 13-166 3.04e-16

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 79.57  E-value: 3.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  13 SFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNlKDSQ 92
Cdd:PRK07390  285 TVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQ 363

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810916  93 DIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILELVCLSWVNCLIFFLYFISTGLTAAYS----FRLFY 166
Cdd:PRK07390  364 DLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVNALTAFNltrvFRLVF 438
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-166 1.80e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 76.93  E-value: 1.80e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK12667  294 LSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQlglAAALFHIINHAIAKSLLFLASGVFIHA 373

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810916  88 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLyFISTGLTAAYSFRLFY 166
Cdd:PRK12667  374 AG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAISLVGYFRAWY 450
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 17-171 1.26e-14

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 74.58  E-value: 1.26e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  17 IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL----------------AFFHLLTHALFKALLFMC 80
Cdd:PRK12645  279 LVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyqgddskiyaaaitaAIFHLINHATFKGSLFMI 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  81 AGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE---------LVCLSWVNCLIFFLYF 151
Cdd:PRK12645  359 VGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsmlnateanLFSLDTWGVLFPVIAW 437

                         170       180
                  ....*....|....*....|
gi 1273810916 152 ISTGLTAAYSFRLFYYSMSG 171
Cdd:PRK12645  438 VASVFTFVYSIIFIFKTFFG 457
PRK12646 PRK12646
DUF4040 family protein;
1-135 1.73e-14

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 74.41  E-value: 1.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPML---DNYGFgsFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG--------------YPKLA 63
Cdd:PRK12646  262 RFTPLLglsNMYIY--IVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasiYVFVL 339

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810916  64 F---FHLLTHALFKALLFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12646  340 FaalFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 5-164 6.34e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 72.11  E-value: 6.34e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   5 MLDNYGFGSFL---LIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLF 78
Cdd:PRK08377  263 MQNANGWSSVLklvIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagvDAGVFHMINHAIVKALLF 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  79 MCAGSMIHNLKDSQDIRFMGSVVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeLVCLSWVNCLIFFLYFISTGLTA 158
Cdd:PRK08377  343 LAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEA 420


                  ....*.
gi 1273810916 159 AYSFRL 164
Cdd:PRK08377  421 VYYFRL 426
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-166 6.62e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 72.44  E-value: 6.62e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   2 FSPMLDNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM-----SILSMGYPKL----------AFFH 66
Cdd:PRK08376  277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglgvGLAALGDPAMasygeialagGIYH 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  67 LLTHALFKALLFMCAGSMIHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLswVNCLI 146
Cdd:PRK08376  357 IVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                         170       180
                  ....*....|....*....|
gi 1273810916 147 FFLYFISTGLTAAYSFRLFY 166
Cdd:PRK08376  434 GVIAMIGSVLTLASFVKVFH 453
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-135 1.93e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 71.01  E-value: 1.93e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  14 FLLI--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIL---SMGYPKLAF----FHLLTHALFKALLFMCAGSM 84
Cdd:PRK12649  278 FILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYgytTYHEPGLGVaaatFHLLNHATFKACLFLVAGIV 357

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1273810916  85 IHNLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12649  358 AHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 12-140 3.74e-13

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 70.30  E-value: 3.74e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALST-------LSQLGLMMSILSMGYPKLA-------FFHLLTHALFKALL 77
Cdd:PRK06521  276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTienigiiFVGLGLAMVFIAYGMPLLAalaltaaLYHLLNHALFKSLL 355

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810916  78 FMCAGSMIHNLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS 140
Cdd:PRK06521  356 FLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-135 4.18e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 66.51  E-value: 4.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   6 LDNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSilsmgYPKLAFFHLLTHALFKALLFMCAGSmI 85
Cdd:PRK07234  239 LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA-----APLVGGLYALAHGLVKSTLFLCAGA-L 312

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810916  86 HNLKDSQDIRFMGSVVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07234  313 PSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-166 5.98e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 66.38  E-value: 5.98e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   9 YGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK---LAFFHLLTHALFKALLFMCAGSmI 85
Cdd:PRK06589  277 FAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKalgAAILHLVSHSFAKICLFYSMGS-I 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  86 HNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS---WVNCLIFFLYFISTGLTAAYSF 162
Cdd:PRK06589  356 YSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLL 435


                  ....
gi 1273810916 163 RLFY 166
Cdd:PRK06589  436 KILS 439
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 11-135 1.40e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 65.52  E-value: 1.40e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-------GYPKLAF-------FHLLTHALFKAL 76
Cdd:PRK08667  269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifgvyGLDTLALlalggalFHSLNHALFKSL 348

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810916  77 LFMCAGSMIHNLKDsQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK08667  349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 11-166 1.43e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 65.40  E-value: 1.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK08668  271 FNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAVIYR 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810916  88 LKDSQdIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVcLSWVNCLIFFLYFISTGLTAAYSFRLFY 166
Cdd:PRK08668  351 TGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
10-134 3.71e-11

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 64.15  E-value: 3.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  10 GFGSFLLIIGcMTMFMAGLGANF---EFDLKKIIALSTLSQLGLMMSILSMGYPKL---AFFHLLTHALFKALLFMCAGS 83
Cdd:PRK12668  236 AFPGTELLIY-IGAAMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIGTALAingAVAHAFNHILYKGLLFMSAGA 314

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1273810916  84 MIHNLKDSqDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12668  315 VLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 12-127 3.27e-10

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 61.00  E-value: 3.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM-------SILSMGYPKL-------AFFHLLTHALFKALL 77
Cdd:PRK08042  245 GVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILlglgagvTGIALEQPALialglvgGLYHLLNHSLFKSVL 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810916  78 FMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGF 127
Cdd:PRK08042  325 FLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 11-165 3.88e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.87  E-value: 3.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYPKL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG1008   274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVGVLYDR 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810916  88 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIleLVCLSWVNCLIFFLYFISTGLTAAYSFRLF 165
Cdd:COG1008   354 TH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLV--LLGAFQVNPWLAILAALGLILTAAYLLWMY 428
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 11-134 5.99e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 59.99  E-value: 5.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGY--PKLAF----FHLLTHALFKALLFMCAGSM 84
Cdd:PRK06525  271 IGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlgSRLALegsiAYIFNHAFAKSLFFLVAGAL 350

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810916  85 IHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06525  351 SYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-135 6.41e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 59.96  E-value: 6.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  14 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL---AFFHLLTHALFKALLFMCAGSMIHnLKD 90
Cdd:PRK07691  277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGmigAIYYLIHDMIVKAALFLLIGIMIK-ITG 355

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1273810916  91 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07691  356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-243 9.27e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 59.51  E-value: 9.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00063  209 RYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFML 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  81 AGSMIHNLKDSQDIR-----FMGSVVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTG 155
Cdd:MTH00063  289 VGDVMSGSGGSQSSNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVF 363

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916 156 LTAAYSFRLFyysmsgdnnYYSSYSFDDSSYFISFGMVGLLIIAVFGGSLLSWIIFPIPISVSLPYYLKFLTIIVVILGS 235
Cdd:MTH00063  364 LSYLYSFRLC---------LILFGVKSSLSSGVRFLFFNSGLMVFLWLFINYYVFLLLDEVVYLGVFISLVLLLVQLLGL 434


                  ....*...
gi 1273810916 236 YLGYLISS 243
Cdd:MTH00063  435 LVGVLFYD 442
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 11-172 4.31e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 54.44  E-value: 4.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSMGYPKL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK05846  276 FAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDR 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  88 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIleLVCLSWVNCLIFFLYFISTGLTAAYSFRLFYY 167
Cdd:PRK05846  356 LH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLI--LLGSFQVNPVIAFIATTGLILAAVYSLWLYQR 432


                  ....*
gi 1273810916 168 SMSGD 172
Cdd:PRK05846  433 VMFGP 437
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 11-166 3.65e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 51.68  E-value: 3.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAF---FHLLTHALFKALLFMCAGsMIHN 87
Cdd:PRK08676  272 FSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHR 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  88 LKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELVCLS-WVNCLIFFLYFIstgltAAYSFRLF 165
Cdd:PRK08676  351 QYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLL-----AASSFAIF 425


                  .
gi 1273810916 166 Y 166
Cdd:PRK08676  426 L 426
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 12-134 1.35e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 49.54  E-value: 1.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPkLAFF----HLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK06458  281 GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGP-LGIFaallHMLNHSLTKSAIFFASGNVLQK 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810916  88 lKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06458  360 -YGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
15-134 2.05e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 49.18  E-value: 2.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL---AFFHLLTHALFKALLFMCAGSMIHnLKDS 91
Cdd:PRK12663  275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810916  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12663  354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-83 2.18e-06

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 49.31  E-value: 2.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFGSFLLII-GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:PRK08168  251 RFAPLLEQAPPARWLLVLvGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFL 330


                  ....
gi 1273810916  80 CAGS 83
Cdd:PRK08168  331 SASE 334
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-135 2.99e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 48.81  E-value: 2.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  10 GFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK---LAFFHLLTHALFKALLFMCAGsMIH 86
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAglsGAIYYVAHHITVQTTLFLVVG-LIE 349

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1273810916  87 NLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12665  350 RQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 1-83 4.63e-06

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 48.11  E-value: 4.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916   1 RFSPMLDNYGFGSFLLIIGCMTMFMaGLGANF-EFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:PRK08601  255 RFSPLFHDDIAQILLLIFASISVLI-GTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFL 333


                  ....
gi 1273810916  80 CAGS 83
Cdd:PRK08601  334 QSGS 337
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-130 1.26e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 46.65  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK12662  278 FNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGyiiLAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYH 357

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810916  88 LkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 130
Cdd:PRK12662  358 F-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 15-137 7.23e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 44.04  E-value: 7.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGyPKLAFFHLLTHALFKALLFMcagsMIHNLKdSQDI 94
Cdd:MTH00112  154 LLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL----TLNTTS-TKTL 227

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810916  95 RFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELV 137
Cdd:MTH00112  228 KDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILqELT 271
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
15-135 1.61e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.10  E-value: 1.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSmIHNLKDS 91
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPlgiVAGIFHAINHVIYKSALFLGAGI-VSYRTKT 347

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810916  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK06277  348 SNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-130 2.02e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.80  E-value: 2.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810916  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHNLKDS 91
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPlgvSAALFYLLAYLFMNLGAFAVILLLSRKGGEA 351

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1273810916  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 130
Cdd:COG1007   352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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