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Conserved domains on  [gi|1273810874|gb|ATQ39519|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Betiscoides sp. B44_dh_78]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-328 7.89e-126

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 371.78  E-value: 7.89e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   1 FGFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNL 80
Cdd:MTH00165  240 SFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNM 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  81 KDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYS 160
Cdd:MTH00165  320 SNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYS 399

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 161 MSGDNNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPIPIMISLPYYLKFLTIIVVILGSYLGYLISSMSISN 240
Cdd:MTH00165  400 MSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSY 479

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 241 NLISLDLLSLVSFVGSMWFMPFLSTKFISYLPLKLGYISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWYDSNFKIYLV 320
Cdd:MTH00165  480 NLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLL 559


                  ....*...
gi 1273810874 321 TFIFWMFI 328
Cdd:MTH00165  560 SFLLWMII 567
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-328 7.89e-126

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 371.78  E-value: 7.89e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   1 FGFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNL 80
Cdd:MTH00165  240 SFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNM 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  81 KDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYS 160
Cdd:MTH00165  320 SNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYS 399

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 161 MSGDNNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPIPIMISLPYYLKFLTIIVVILGSYLGYLISSMSISN 240
Cdd:MTH00165  400 MSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSY 479

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 241 NLISLDLLSLVSFVGSMWFMPFLSTKFISYLPLKLGYISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWYDSNFKIYLV 320
Cdd:MTH00165  480 NLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLL 559


                  ....*...
gi 1273810874 321 TFIFWMFI 328
Cdd:MTH00165  560 SFLLWMII 567
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 6-233 1.49e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 160.70  E-value: 1.49e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   6 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLkDSQD 85
Cdd:COG1009   277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRD 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  86 IRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGD 164
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGK 435

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810874 165 NNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWI---------IFPIPIMISLPYYLKFLTIIVVILGSYLGYLI 233
Cdd:COG1009   436 PRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 152-328 2.72e-41

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 141.92  E-value: 2.72e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 152 YSFRLFYYSMSGDNNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPIPIMISLPYYLKFLTIIVVILGSYLGY 231
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 232 LISSMSISNNLISLdLLSLVSFVGSMWFMPFLSTKFISYLPLKLGYISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWY 311
Cdd:pfam06455  81 ELSNLSNKQLKKSL-NFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|....*..
gi 1273810874 312 DSNFKIYLVTFIFWMFI 328
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLL 176
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 6-233 3.08e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 143.19  E-value: 3.08e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   6 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 85
Cdd:TIGR01974 279 LVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  86 IRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDN 165
Cdd:TIGR01974 359 IRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKE 438

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810874 166 NYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPI-----------PIMISLPYYLKFLTIIVVILGSYLGYLI 233
Cdd:TIGR01974 439 RHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsaepaLEHHHVPALEIWSPTAVAILGILLAYLL 517
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-328 7.89e-126

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 371.78  E-value: 7.89e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   1 FGFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNL 80
Cdd:MTH00165  240 SFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNM 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  81 KDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYS 160
Cdd:MTH00165  320 SNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYS 399

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 161 MSGDNNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPIPIMISLPYYLKFLTIIVVILGSYLGYLISSMSISN 240
Cdd:MTH00165  400 MSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSY 479

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 241 NLISLDLLSLVSFVGSMWFMPFLSTKFISYLPLKLGYISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWYDSNFKIYLV 320
Cdd:MTH00165  480 NLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLL 559


                  ....*...
gi 1273810874 321 TFIFWMFI 328
Cdd:MTH00165  560 SFLLWMII 567
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 3-319 1.66e-82

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 260.47  E-value: 1.66e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   3 FGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKD 82
Cdd:MTH00207  242 FNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHH 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  83 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMS 162
Cdd:MTH00207  322 SQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLW 401

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 163 GDNNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPIPIMISLPYYLKFLTIIVVILGSYLGYLISSMSISNNL 242
Cdd:MTH00207  402 SPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLFTTPNITKTP 481

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1273810874 243 ISLDLLSLVSFVGSMWFMPFLSTKFISYLPLKLGYISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWYDSNFKIYL 319
Cdd:MTH00207  482 LLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMFSRSSNNVMKLQKNIPNNYL 558
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 2-328 1.65e-79

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 252.46  E-value: 1.65e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   2 GFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLK 81
Cdd:MTH00151  238 GFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSS 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  82 DSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSM 161
Cdd:MTH00151  318 GTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLV 397

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 162 SGDNNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPIPIMISLPYYLKFLTIIVVILGSYLGYLISSMSISNN 241
Cdd:MTH00151  398 WGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSFGFWDSGFSSS 477

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 242 LISLdllsLVSFVGSMWFMPFLSTKFISYLPLKLGYISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWYDSNFKIYLVT 321
Cdd:MTH00151  478 KMVK----LSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWPVKWFNFFIGL 553


                  ....*..
gi 1273810874 322 FIFWMFI 328
Cdd:MTH00151  554 ILLLVLF 560
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 3-328 4.77e-78

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 248.41  E-value: 4.77e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   3 FGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKD 82
Cdd:MTH00209  238 FSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGH 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  83 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMS 162
Cdd:MTH00209  318 SQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLW 397

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 163 GDNNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPIPIMISLPYYLKFLTIIVVILGSYLGYlissMSISNNL 242
Cdd:MTH00209  398 GPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY----MVLKKNF 473

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 243 ISLDLLSLVSFVGSMWFMPFLSTKFISYLPLKLGYISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWYDSNFKIYLVTF 322
Cdd:MTH00209  474 FLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQNNSLKLFVTFM 553


                  ....*.
gi 1273810874 323 IFWMFI 328
Cdd:MTH00209  554 MLILLG 559
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-328 7.98e-62

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 206.73  E-value: 7.98e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   1 FGFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNL 80
Cdd:MTH00211  265 QLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGL 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  81 KDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYS 160
Cdd:MTH00211  345 NNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLS 424

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 161 MSGDNNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPI-PIMISLPYYLKFLTIIVVILGSYLGylissMSIS 239
Cdd:MTH00211  425 LGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEkPEILSLPFLLKLMPLLVTIVGLLLG-----LELV 499

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 240 NNLISLDLLSLVSFVGSMWFMPFLSTKFISYLPLKLG-YISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWYDSNFKIY 318
Cdd:MTH00211  500 NLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGqTLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTSPQQGLIKSY 579

                         330
                  ....*....|
gi 1273810874 319 LVTFIFWMFI 328
Cdd:MTH00211  580 LALLLLSLLL 589
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 8-328 3.44e-57

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 194.61  E-value: 3.44e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   8 LIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 87
Cdd:MTH00004  277 LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIR 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  88 FMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNY 167
Cdd:MTH00004  357 KMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 168 YSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPI-PIMISLPYYLKFLTIIVVILGSYLGYLISSMsiSNNLISLD 246
Cdd:MTH00004  437 PPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLALELSNM--TTTLTPPK 514

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 247 LLSLVSFVGSMWFMPFLSTKFISYLPLKLGY-ISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWYDSNFKIYLVTFIFW 325
Cdd:MTH00004  515 QNTLHNFSNQLAFFNPLTHRLLPMTLLKSSQkIATHLIDLSWLEKMGPKGLANLQLTASKTLTTLQKGLIKNYLTSFALT 594


                  ...
gi 1273810874 326 MFI 328
Cdd:MTH00004  595 ILL 597
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 8-328 1.16e-55

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 190.95  E-value: 1.16e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   8 LIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 87
Cdd:MTH00208  304 LILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLR 383

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  88 FMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNY 167
Cdd:MTH00208  384 KMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSF 463

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 168 YSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPIPIMIsLPYYLKFLTIIVVILGSYLGYLISSMSISNNLISldl 247
Cdd:MTH00208  464 SPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPPLT-LPLILKSLPLIVTIIGAAFSFSFLLSLSSNPINS--- 539

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 248 lSLVSFVGSMWFMPFLSTKFISYLPLKLG-YISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWYDSNFKIYLVTFIFWM 326
Cdd:MTH00208  540 -NFFSFLSNQWFFVNISHSIIISFSFFTSlFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLTQTGYIKQYLLSSTLLF 618


                  ..
gi 1273810874 327 FI 328
Cdd:MTH00208  619 LL 620
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 8-324 4.62e-52

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 180.87  E-value: 4.62e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   8 LIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 87
Cdd:MTH00066  275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  88 FMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNY 167
Cdd:MTH00066  355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 168 YSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPI-PIMISLPYYLKFLTIIVVILGSYLGYLISSMSISNNLISLd 246
Cdd:MTH00066  435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDLAKITSKTTPKTK- 513

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810874 247 llsLVSFVGSMWFMPFLSTKFISYLPLKLGY-ISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWYDSNFKIYLVTFIF 324
Cdd:MTH00066  514 ---MHSFSNLLAFFPTIIHRLSPKTNLNSGQnIATHLTDMTWYEKSGPKGLTNQQLPPIKTITNIQTGLIKTYLTLFLI 589
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 14-276 1.73e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 173.89  E-value: 1.73e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  14 TMFMAgLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSVV 93
Cdd:MTH00108  285 TLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLF 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  94 NFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNYYSSYFF 173
Cdd:MTH00108  364 KTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITI 443

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 174 DDSSYFISFGMIGLLIIAVFGGSLLSWIIFP--IPIMiSLPYYLKFLTIIVVILGSYLGYLISSMsiSNNLISLDLLSLV 251
Cdd:MTH00108  444 NENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILGFILALELNLL--TNNLKFKYPSNTF 520

                         250       260
                  ....*....|....*....|....*
gi 1273810874 252 SFVGSMWFMPFLSTKFISYLPLKLG 276
Cdd:MTH00108  521 KFSNMLGYFPTIMHRLPPYMNLTMS 545
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 27-324 2.01e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 163.08  E-value: 2.01e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  27 DLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVS 106
Cdd:MTH00137  302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 107 SLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRL-FYYSMSgdnnyyssyffddSSYFISFGMI 185
Cdd:MTH00137  382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVvFFVSMG-------------HPRFNPLSPI 448

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 186 G---LLII---------AVFGGSLLSWIIFPI--PIMiSLPYYLKFLTIIVVILGSYLGYLISSMSiSNNLISLDLLSLV 251
Cdd:MTH00137  449 NennPAVInpikrlawgSIIAGLLITSNILPLktPVM-TMPPLLKLAALIVTILGLLIALELASLT-NKQFKPTPTLPPH 526

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810874 252 SFVGSMWFMPFLSTKFISYLPLKLG-YISCKSFDYGWGEMMGGQGLYGVFIYMI----NYMQGWydsnFKIYLVTFIF 324
Cdd:MTH00137  527 HFSNMLGFFPAIIHRLTPKLNLTLGqTIATQMVDQTWLEKTGPKGIASLQLPLItttsNIQQGM----IKTYLTLFLL 600
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 6-233 1.49e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 160.70  E-value: 1.49e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   6 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLkDSQD 85
Cdd:COG1009   277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRD 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  86 IRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGD 164
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGK 435

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810874 165 NNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWI---------IFPIPIMISLPYYLKFLTIIVVILGSYLGYLI 233
Cdd:COG1009   436 PRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 152-328 2.72e-41

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 141.92  E-value: 2.72e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 152 YSFRLFYYSMSGDNNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPIPIMISLPYYLKFLTIIVVILGSYLGY 231
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 232 LISSMSISNNLISLdLLSLVSFVGSMWFMPFLSTKFISYLPLKLGYISCKSFDYGWGEMMGGQGLYGVFIYMINYMQGWY 311
Cdd:pfam06455  81 ELSNLSNKQLKKSL-NFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|....*..
gi 1273810874 312 DSNFKIYLVTFIFWMFI 328
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLL 176
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 9-301 5.06e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 148.23  E-value: 5.06e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   9 IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 88
Cdd:MTH00210  280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRK 359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  89 MGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNYY 168
Cdd:MTH00210  360 MGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSK 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 169 SSYFF--DDSSYFISFGMIGLLIIAVFGGSL-----LSWIIFPIpimisLPYYLKFLTIIVVILGSYLGYLISSMSI--- 238
Cdd:MTH00210  440 KEVFIgvHESSWNITFPLLLLAFGSIFVGYLgkevvLSNVIPPI-----VPNSIKMIPLLFSLLGALLAFVIYNSMVfli 514

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1273810874 239 ---SNNLISLDLLSLVSFVGSMWFMPFLSTKFISYLPLKLGY-ISCKSFDYGWGEMMGGQGLYGVFI 301
Cdd:MTH00210  515 kisRRGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHlITYRIIDRGLLEIIGPRGISKVLI 581
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 9-305 6.70e-40

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 147.92  E-value: 6.70e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   9 IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 88
Cdd:MTH00020  279 IVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRK 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  89 MGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNYY 168
Cdd:MTH00020  359 MGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLK 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 169 SSYFFD--DSSYFISFGMIGLLIIAVFGGSLLSWIIF--------PIPIMISL-PYYLKFLTIIVVI-LGSYLGYLISSM 236
Cdd:MTH00020  439 KAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIWsfqitlppIVPLSIKLlPVFLSLGGIGLVIiLYFYSSKTFRVP 518

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 237 SISNNLISLdllslvSFVGSMWFMPFLSTKFISYLPLKLGY-ISCKSFDYGWGEMMGGQGLYGVFIYMIN 305
Cdd:MTH00020  519 FSFIGRNSY------TFLGSAWQFNYILNYFLIKKIWKGGHlISYRTIDKGVLELVGPKGISNFLIILTQ 582
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 6-233 3.08e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 143.19  E-value: 3.08e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   6 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 85
Cdd:TIGR01974 279 LVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  86 IRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDN 165
Cdd:TIGR01974 359 IRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKE 438

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810874 166 NYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPI-----------PIMISLPYYLKFLTIIVVILGSYLGYLI 233
Cdd:TIGR01974 439 RHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsaepaLEHHHVPALEIWSPTAVAILGILLAYLL 517
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 6-233 1.02e-37

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 141.83  E-value: 1.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   6 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 85
Cdd:PRK06590  283 FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  86 IRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDN 165
Cdd:PRK06590  363 IRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGKE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810874 166 NYYsSYFFDDSSYFISFGMIGLLIIAVFGG-----SLLSWIIFP-----IPIMISLPYYLKFLTIIVVILGSYLGYLI 233
Cdd:PRK06590  442 KEK-IHHPHESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLPLVVALAGIALAWLL 518
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
6-164 2.78e-32

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 126.68  E-value: 2.78e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   6 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKD--- 82
Cdd:PRK07376  293 VIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvg 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  83 -----SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSwvNCLIFFLYFISTGLTAAYSFRLF 157
Cdd:PRK07376  373 hdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMY 450


                  ....*..
gi 1273810874 158 YYSMSGD 164
Cdd:PRK07376  451 FLTFEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 6-145 9.74e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.63  E-value: 9.74e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   6 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHNLKD 82
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810874  83 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFIS 145
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 10-186 2.25e-25

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 106.51  E-value: 2.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  10 IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNL--------K 81
Cdd:CHL00025  297 IGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspD 376

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  82 DSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElvcLSWVNCLIF-FLYFISTGLTAAYSFRLFYYS 160
Cdd:CHL00025  377 KSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILN---DSWLYSPIFaIIAWSTAGLTAFYMFRIYLLT 453

                         170       180
                  ....*....|....*....|....*..
gi 1273810874 161 MSGD-NNYYSSYFFDDSSYFISFGMIG 186
Cdd:CHL00025  454 FEGHlRVHFQNYSGKKNSSFYSISLWG 480
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 9-296 1.28e-24

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 104.27  E-value: 1.28e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   9 IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GYSKLAFFHLLTHALFKALLFMCAGSMIHNLK-DSQDI 86
Cdd:MTH00032  294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  87 RFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCL----------------------------------- 131
Cdd:MTH00032  374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTYSgrnmgipfgssllkiqgdigikkddrgsiggpegy 453

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 132 -SWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNYYSSYFFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPI----- 205
Cdd:MTH00032  454 pSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLLCFGAIFVGYLIQDIligdi 533

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 206 ------PIMISLPYYLKFLTIIVVILGSYLGYLISSMSISNNLISLDLLSLVSFVGSMWFMPFLSTKFISYLPLKLGYIS 279
Cdd:MTH00032  534 ehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGGAWQGDHLINKLVAIPLFSFGHWG 613

                         330
                  ....*....|....*...
gi 1273810874 280 C-KSFDYGWGEMMGGQGL 296
Cdd:MTH00032  614 IyKTLDRGWLELFGPQGI 631
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 3-159 1.36e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 97.53  E-value: 1.36e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   3 FGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---AFFHLLTHALFKALLFMCAGSMIHN 79
Cdd:COG0651   271 LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERA 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  80 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVcLSWVNCLIFFLYFISTGLTAAYSFRLFYY 159
Cdd:COG0651   351 TG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-277 6.02e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 90.36  E-value: 6.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   1 FGFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNL 80
Cdd:MTH00095  224 MNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSN 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  81 KDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFyys 160
Cdd:MTH00095  304 FGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRLW--- 380

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874 161 MSGDNNYYSSYFFDDSSYFISFGMIGLLIIAVFggsLLSWIIFPIPIMISLPYYLKFLTIIVVILgsyLGYLISSMSISN 240
Cdd:MTH00095  381 KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVPLFYLF---MIMLFSFFFFKL 454

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1273810874 241 NLISLDLLSLVSFVGSMWFMPFLSTKFISYLPLKLGY 277
Cdd:MTH00095  455 LFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGY 491
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-159 3.66e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 84.93  E-value: 3.66e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   2 GFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIH 78
Cdd:PRK08375  269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  79 NLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILELVCLSWVNCLIFFLyfISTGLTAAYSFRLF 157
Cdd:PRK08375  349 TYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIW 425


                  ..
gi 1273810874 158 YY 159
Cdd:PRK08375  426 YR 427
PRK12650 PRK12650
DUF4040 family protein;
7-156 2.07e-17

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 83.17  E-value: 2.07e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   7 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHNlKDS 83
Cdd:PRK12650  275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVVHTLAHALFKSSLFMLIGVVDHQ-AGT 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1273810874  84 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTA----AYSFRL 156
Cdd:PRK12650  354 RDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAvftfAYSARL 430
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 7-158 6.21e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 81.51  E-value: 6.21e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   7 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHL---LTHALFKALLFMCAGSMIHNlKDS 83
Cdd:PRK12644  270 VLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS-TGT 348

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810874  84 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELV----CLSWVNCLIFFLYFISTGLTAAYSFRLFY 158
Cdd:PRK12644  349 RDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLRFLW 427
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 10-155 8.53e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 81.39  E-value: 8.53e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  10 IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLA----FFHLLTHALFKALLFMCAGSMIHNlKDSQD 85
Cdd:PRK12648  277 AGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAGIIDHE-TGTRD 354

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810874  86 IRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILELVCLSWVNCLIFFLYFISTGLTAAYSFR 155
Cdd:PRK12648  355 MRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 7-127 6.44e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 78.42  E-value: 6.44e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   7 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHNlKDS 83
Cdd:PRK12647  262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSElaiKAAVLFLVAHSLYKGALFMVAGIIDHE-TGT 340

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810874  84 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 127
Cdd:PRK12647  341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 5-158 2.32e-15

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 76.87  E-value: 2.32e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   5 KFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNlKDSQ 84
Cdd:PRK07390  285 TVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQ 363

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810874  85 DIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILELVCLSWVNCLIFFLYFISTGLTAAYS----FRLFY 158
Cdd:PRK07390  364 DLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVNALTAFNltrvFRLVF 438
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-158 9.14e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 74.62  E-value: 9.14e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   7 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKL----AFFHLLTHALFKALLFMCAGSMIHNLKd 82
Cdd:PRK12667  298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIG-TQLglaaALFHIINHAIAKSLLFLASGVFIHAAG- 375

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810874  83 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLyFISTGLTAAYSFRLFY 158
Cdd:PRK12667  376 TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAISLVGYFRAWY 450
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 9-163 1.27e-14

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 74.58  E-value: 1.27e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   9 IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL----------------AFFHLLTHALFKALLFMC 72
Cdd:PRK12645  279 LVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyqgddskiyaaaitaAIFHLINHATFKGSLFMI 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  73 AGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE---------LVCLSWVNCLIFFLYF 143
Cdd:PRK12645  359 VGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsmlnateanLFSLDTWGVLFPVIAW 437

                         170       180
                  ....*....|....*....|
gi 1273810874 144 ISTGLTAAYSFRLFYYSMSG 163
Cdd:PRK12645  438 VASVFTFVYSIIFIFKTFFG 457
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 2-156 2.80e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 73.26  E-value: 2.80e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   2 GFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIH 78
Cdd:PRK08377  271 SVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagvDAGVFHMINHAIVKALLFLAVGYVGI 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810874  79 NLKDSQDIRFMGSVVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeLVCLSWVNCLIFFLYFISTGLTAAYSFRL 156
Cdd:PRK08377  351 TLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK12646 PRK12646
DUF4040 family protein;
10-127 6.72e-14

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 72.48  E-value: 6.72e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  10 IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG----------YSKL-------AFFHLLTHALFKALLFMC 72
Cdd:PRK12646  280 VGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaIASIyvfvlfaALFHLMNHAIFKCALFMG 359

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1273810874  73 AGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 127
Cdd:PRK12646  360 VGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 10-127 1.72e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 71.01  E-value: 1.72e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  10 IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIlsMGYSK---------LAFFHLLTHALFKALLFMCAGSMIHNL 80
Cdd:PRK12649  284 TGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYTTyhepglgvaAATFHLLNHATFKACLFLVAGIVAHEA 361

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810874  81 KdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 127
Cdd:PRK12649  362 A-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-158 6.60e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 68.97  E-value: 6.60e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   4 GKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---------------AFFHLLTHALFKAL 68
Cdd:PRK08376  287 GWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKAL 366

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  69 LFMCAGSMIHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLswVNCLIFFLYFISTGL 148
Cdd:PRK08376  367 LFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVL 443

                         170
                  ....*....|
gi 1273810874 149 TAAYSFRLFY 158
Cdd:PRK08376  444 TLASFVKVFH 453
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 4-132 1.78e-12

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 67.99  E-value: 1.78e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   4 GKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMsiLSMGYSKL----------------AFFHLLTHALFKA 67
Cdd:PRK06521  276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIF--VGLGLAMVfiaygmpllaalaltaALYHLLNHALFKS 353

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810874  68 LLFMCAGSMIHNLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS 132
Cdd:PRK06521  354 LLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-158 1.10e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 65.22  E-value: 1.10e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   1 FGFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGYSKLAFFHLLTHALFKALLFMCAGSmI 77
Cdd:PRK06589  277 FAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-I 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  78 HNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS---WVNCLIFFLYFISTGLTAAYSF 154
Cdd:PRK06589  356 YSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLL 435


                  ....
gi 1273810874 155 RLFY 158
Cdd:PRK06589  436 KILS 439
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-127 2.29e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 64.20  E-value: 2.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   1 FGFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGysklAFFHlLTHALFKALLFMCAGSmIHNL 80
Cdd:PRK07234  242 PGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYA-LAHGLVKSTLFLCAGA-LPSR 315

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810874  81 KDSQDIRFMGSVVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 127
Cdd:PRK07234  316 NFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 3-127 2.38e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 64.37  E-value: 2.38e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   3 FGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGL-----------------MMSILSMGYsklAFFHLLTHALF 65
Cdd:PRK08667  269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIilmgiglyvifgvygldTLALLALGG---ALFHSLNHALF 345

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1273810874  66 KALLFMCAGSMIHNLKDsQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 127
Cdd:PRK08667  346 KSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 3-158 3.13e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 64.25  E-value: 3.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   3 FGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHN 79
Cdd:PRK08668  271 FNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAVIYR 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810874  80 LKDSQdIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVcLSWVNCLIFFLYFISTGLTAAYSFRLFY 158
Cdd:PRK08668  351 TGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
2-126 4.83e-11

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 63.38  E-value: 4.83e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   2 GFGKFLLIIGcMTMFMAGLGANF---EFDLKKIIALSTLSQLGLMMSILSMGySKL----AFFHLLTHALFKALLFMCAG 74
Cdd:PRK12668  236 AFPGTELLIY-IGAAMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIG-TALaingAVAHAFNHILYKGLLFMSAG 313

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1273810874  75 SMIHNLKDSqDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 126
Cdd:PRK12668  314 AVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 6-244 1.50e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 61.82  E-value: 1.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   6 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 85
Cdd:MTH00063  222 FFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQS 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  86 IRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFLYFISTGLTAAYSFRLFYYSMSGDN 165
Cdd:MTH00063  302 SNCVYSSILYGSWNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRLCLILFGVKS 381

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810874 166 NYYSSYFFDdssYFISFGMiglliiaVFGGSLLSWIIFpipIMISLPYYLKFLTIIVVILGSYLGYLISSMSISNNLIS 244
Cdd:MTH00063  382 SLSSGVRFL---FFNSGLM-------VFLWLFINYYVF---LLLDEVVYLGVFISLVLLLVQLLGLLVGVLFYDSNLFS 447
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 4-119 1.83e-10

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 61.77  E-value: 1.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   4 GKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLA--------------FFHLLTHALFKALL 69
Cdd:PRK08042  245 GVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVL 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810874  70 FMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGF 119
Cdd:PRK08042  325 FLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 3-126 2.28e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 61.14  E-value: 2.28e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   3 FGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGY--SKLAF----FHLLTHALFKALLFMCAGSM 76
Cdd:PRK06525  271 IGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlgSRLALegsiAYIFNHAFAKSLFFLVAGAL 350

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810874  77 IHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 126
Cdd:PRK06525  351 SYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 3-157 3.48e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.87  E-value: 3.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   3 FGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHN 79
Cdd:COG1008   274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVGVLYDR 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810874  80 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIleLVCLSWVNCLIFFLYFISTGLTAAYSFRLF 157
Cdd:COG1008   354 TH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLV--LLGAFQVNPWLAILAALGLILTAAYLLWMY 428
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-127 2.67e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 58.04  E-value: 2.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   6 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHnLKD 82
Cdd:PRK07691  277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITG 355

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1273810874  83 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 127
Cdd:PRK07691  356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 3-164 1.16e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.90  E-value: 1.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   3 FGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHN 79
Cdd:PRK05846  276 FAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDR 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  80 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIleLVCLSWVNCLIFFLYFISTGLTAAYSFRLFYY 159
Cdd:PRK05846  356 LH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLI--LLGSFQVNPVIAFIATTGLILAAVYSLWLYQR 432


                  ....*
gi 1273810874 160 SMSGD 164
Cdd:PRK05846  433 VMFGP 437
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-127 3.18e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 48.43  E-value: 3.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   2 GFGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM----GYSKlAFFHLLTHALFKALLFMCAGsMI 77
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALstvaGLSG-AIYYVAHHITVQTTLFLVVG-LI 348

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810874  78 HNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 127
Cdd:PRK12665  349 ERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 4-126 4.77e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.00  E-value: 4.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   4 GKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLAFF----HLLTHALFKALLFMCAGSMIHN 79
Cdd:PRK06458  281 GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQK 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810874  80 lKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 126
Cdd:PRK06458  360 -YGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
7-75 7.23e-06

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 47.39  E-value: 7.23e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810874   7 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGS 75
Cdd:PRK08168  266 LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSASE 334
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 3-158 8.13e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.06  E-value: 8.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   3 FGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAF---FHLLTHALFKALLFMCAGsMIHN 79
Cdd:PRK08676  272 FSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHR 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874  80 LKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELVCLS-WVNCLIFFLYFIstgltAAYSFRLF 157
Cdd:PRK08676  351 QYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLL-----AASSFAIF 425


                  .
gi 1273810874 158 Y 158
Cdd:PRK08676  426 L 426
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-122 9.32e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.04  E-value: 9.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   3 FGKFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-YSKL--AFFHLLTHALFKALLFMCAGSMIHN 79
Cdd:PRK12662  278 FNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVSGSISYH 357

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810874  80 LkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 122
Cdd:PRK12662  358 F-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
7-126 1.39e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.48  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   7 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---AFFHLLTHALFKALLFMCAGSMIHnLKDS 83
Cdd:PRK12663  275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810874  84 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 126
Cdd:PRK12663  354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-122 3.59e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.03  E-value: 3.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   7 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIL----SMGYSkLAFFHLLTHALFKALLFMCAGSMIHNLKD 82
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVS-AALFYLLAYLFMNLGAFAVILLLSRKGGE 350

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1273810874  83 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 122
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 5-129 9.28e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 40.58  E-value: 9.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   5 KFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLAFFHLLTHALFKALLFMcagsMIHNLKdSQ 84
Cdd:MTH00112  152 TLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL----TLNTTS-TK 225

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1273810874  85 DIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELV 129
Cdd:MTH00112  226 TLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILqELT 271
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 27-75 1.09e-03

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 40.40  E-value: 1.09e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1273810874  27 DLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGS 75
Cdd:PRK08601  289 DYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGS 337
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
7-127 1.14e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.40  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810874   7 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG--YSKLA-FFHLLTHALFKALLFMCAGSmIHNLKDS 83
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGtpLGIVAgIFHAINHVIYKSALFLGAGI-VSYRTKT 347

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810874  84 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 127
Cdd:PRK06277  348 SNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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