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Conserved domains on  [gi|1273810858|gb|ATQ39511|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Betiscoides sp. B35_bk_83]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-254 1.35e-103

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 311.69  E-value: 1.35e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  81 AGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 161 SFRLFYYSMSGDNNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMISLPYYLKFLTIIVVVMGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250
                  ....*....|....
gi 1273810858 241 LSKMNISYNLISLS 254
Cdd:MTH00165  472 LSLMSLSYNLKSLK 485
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-254 1.35e-103

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 311.69  E-value: 1.35e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  81 AGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 161 SFRLFYYSMSGDNNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMISLPYYLKFLTIIVVVMGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250
                  ....*....|....
gi 1273810858 241 LSKMNISYNLISLS 254
Cdd:MTH00165  472 LSLMSLSYNLKSLK 485
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 14-241 1.56e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 158.01  E-value: 1.56e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  14 FLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLkDSQD 93
Cdd:COG1009   277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRD 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  94 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWVNCLIFFFYFVSTGLTASYSFRLFYYSMSGD 172
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGK 435

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810858 173 NNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWI---------IFPVPFMISLPYYLKFLTIIVVVMGSYLGYLL 241
Cdd:COG1009   436 PRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 17-241 2.09e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 141.27  E-value: 2.09e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  17 VIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 96
Cdd:TIGR01974 282 IIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRK 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  97 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASYSFRLFYYSMSGDNNFY 176
Cdd:TIGR01974 362 MGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810858 177 SNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWI---IFPVPFMI--------SLPYYLKFLTIIVVVMGSYLGYLL 241
Cdd:TIGR01974 442 ADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLfefLKGVLPTSaepalehhHVPALEIWSPTAVAILGILLAYLL 517
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 14-153 2.46e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 2.46e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  14 FLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHNLKD 90
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810858  91 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVS 153
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-254 1.35e-103

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 311.69  E-value: 1.35e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  81 AGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 161 SFRLFYYSMSGDNNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMISLPYYLKFLTIIVVVMGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250
                  ....*....|....
gi 1273810858 241 LSKMNISYNLISLS 254
Cdd:MTH00165  472 LSLMSLSYNLKSLK 485
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-247 1.29e-69

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 223.57  E-value: 1.29e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVF-GFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00151  228 RFFPFLSSSsGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFL 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  80 CAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTAS 159
Cdd:MTH00151  308 CAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTAL 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 160 YSFRLFYYSMSGDNNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMISLPYYLKFLTIIVVVMGSYLGY 239
Cdd:MTH00151  388 YSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSF 467


                  ....*...
gi 1273810858 240 LLSKMNIS 247
Cdd:MTH00151  468 GFWDSGFS 475
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-254 1.74e-69

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 223.49  E-value: 1.74e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFG-FGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00207  231 RFYPFLSSTYwFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFV 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  80 CAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTAS 159
Cdd:MTH00207  311 CAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAA 390

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 160 YSFRLFYYSMSGDNNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMISLPYYLKFLTIIVVVMGSYLGY 239
Cdd:MTH00207  391 YSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAW 470

                         250
                  ....*....|....*
gi 1273810858 240 LLSKMNISYNLISLS 254
Cdd:MTH00207  471 LFTTPNITKTPLLIN 485
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-245 4.34e-68

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 219.90  E-value: 4.34e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFGFGKF-LLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00209  227 RFFPSLFSSPFFSMsLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFI 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  80 CAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTAS 159
Cdd:MTH00209  307 CAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAA 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 160 YSFRLFYYSMSGDNNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMISLPYYLKFLTIIVVVMGSYLGY 239
Cdd:MTH00209  387 YSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY 466


                  ....*.
gi 1273810858 240 LLSKMN 245
Cdd:MTH00209  467 MVLKKN 472
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-243 2.80e-56

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 189.39  E-value: 2.80e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDV-FGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00211  256 RLSPLFQNnQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFM 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  80 CAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTAS 159
Cdd:MTH00211  336 CSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAA 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 160 YSFRLFYYSMSGDNNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMI-SLPYYLKFLTIIVVVMGSYLG 238
Cdd:MTH00211  416 YSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEIlSLPFLLKLMPLLVTIVGLLLG 495


                  ....*
gi 1273810858 239 YLLSK 243
Cdd:MTH00211  496 LELVN 500
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 16-245 1.15e-55

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 187.68  E-value: 1.15e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  16 LVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 95
Cdd:MTH00004  277 LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIR 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  96 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASYSFRLFYYSMSGDNNF 175
Cdd:MTH00004  357 KMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT 436

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1273810858 176 YSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPV-PFMISLPYYLKFLTIIVVVMGSYLGYLLSKMN 245
Cdd:MTH00004  437 PPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLALELSNMT 507
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 16-244 2.30e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 170.80  E-value: 2.30e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  16 LVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 95
Cdd:MTH00108  278 LCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIR 357

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  96 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASYSFRLFYYSMSGDNNF 175
Cdd:MTH00108  358 KMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRF 437

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1273810858 176 YSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFP--VPFMiSLPYYLKFLTIIVVVMGSYLGYLLSKM 244
Cdd:MTH00108  438 PPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILGFILALELNLL 507
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 16-244 4.28e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 170.09  E-value: 4.28e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  16 LVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 95
Cdd:MTH00066  275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  96 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASYSFRLFYYSMSGDNNF 175
Cdd:MTH00066  355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 176 YSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMI-SLPYYLKFLTIIVVVMGSYLGYLLSKM 244
Cdd:MTH00066  435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQIlTMPTFMKLAALLVTLLGLLIALDLAKI 504
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-252 8.25e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 169.77  E-value: 8.25e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFG-FGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00208  288 RTSPLISNSPwFLSLCLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  80 CAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTAS 159
Cdd:MTH00208  368 CSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAV 447

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 160 YSFRLFYYSMSGDNNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPfMISLPYYLKFLTIIVVVMGSYLGY 239
Cdd:MTH00208  448 YSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSF 526

                         250
                  ....*....|...
gi 1273810858 240 LLSkMNISYNLIS 252
Cdd:MTH00208  527 SFL-LSLSSNPIN 538
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 35-169 1.60e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 160.77  E-value: 1.60e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  35 DLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVS 114
Cdd:MTH00137  302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810858 115 SLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASYSFRL-FYYSM 169
Cdd:MTH00137  382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVvFFVSM 437
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 14-241 1.56e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 158.01  E-value: 1.56e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  14 FLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLkDSQD 93
Cdd:COG1009   277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRD 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  94 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWVNCLIFFFYFVSTGLTASYSFRLFYYSMSGD 172
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGK 435

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810858 173 NNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWI---------IFPVPFMISLPYYLKFLTIIVVVMGSYLGYLL 241
Cdd:COG1009   436 PRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 14-241 6.43e-39

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 142.60  E-value: 6.43e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  14 FLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 93
Cdd:PRK06590  283 FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  94 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElVCLSWVNCLIFFFYFVSTGLTASYSFRLFYYSMSGDN 173
Cdd:PRK06590  363 IRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGKE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810858 174 NfYSNYSFDDSGYFISFGMIGLLIIAVFGG-----SLLSWIIFP-----VPFMISLPYYLKFLTIIVVVMGSYLGYLL 241
Cdd:PRK06590  442 K-EKIHHPHESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLPLVVALAGIALAWLL 518
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 17-241 2.09e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 141.27  E-value: 2.09e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  17 VIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 96
Cdd:TIGR01974 282 IIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRK 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  97 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASYSFRLFYYSMSGDNNFY 176
Cdd:TIGR01974 362 MGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHE 441

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810858 177 SNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWI---IFPVPFMI--------SLPYYLKFLTIIVVVMGSYLGYLL 241
Cdd:TIGR01974 442 ADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLfefLKGVLPTSaepalehhHVPALEIWSPTAVAILGILLAYLL 517
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-252 1.09e-36

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 136.36  E-value: 1.09e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFGFGKFLL-VIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:MTH00020  262 RSSPLFEQAPLALIIVtIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFL 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  80 CAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSwvNCLIFFFYFVSTG--LT 157
Cdd:MTH00020  342 SAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQ--YYLIFAYWLGCFSalLT 419

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 158 ASYSFRLFYYS-MSGDNNFYSNYSFDDSGYFISFGMIGLLII-AVFGGSLLSWIIF--------PVPFMISL-PYYLKFL 226
Cdd:MTH00020  420 AFYSIRLIYLTfLSNTNLKKAVFFHLHEGDWNLLLPLGILALgSIFVGYLAKEMIWsfqitlppIVPLSIKLlPVFLSLG 499

                         250       260
                  ....*....|....*....|....*..
gi 1273810858 227 TII-VVVMGSYLGYLLSKMNISYNLIS 252
Cdd:MTH00020  500 GIGlVIILYFYSSKTFRVPFSFIGRNS 526
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 17-241 1.59e-35

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 133.21  E-value: 1.59e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  17 VIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 96
Cdd:MTH00210  280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRK 359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  97 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASYSFRLFYYSMSGDNNFY 176
Cdd:MTH00210  360 MGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSK 439

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1273810858 177 SN--YSFDDSGYFISFGMIGLLIIAVFGGSL-----LSWIIFPVpfmisLPYYLKFLTIIVVVMGSYLGYLL 241
Cdd:MTH00210  440 KEvfIGVHESSWNITFPLLLLAFGSIFVGYLgkevvLSNVIPPI-----VPNSIKMIPLLFSLLGALLAFVI 506
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
14-172 4.72e-34

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 129.37  E-value: 4.72e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  14 FLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNLKD--- 90
Cdd:PRK07376  293 VIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvg 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  91 -----SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSwvNCLIFFFYFVSTGLTASYSFRLF 165
Cdd:PRK07376  373 hdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMY 450


                  ....*..
gi 1273810858 166 YYSMSGD 172
Cdd:PRK07376  451 FLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 18-194 4.30e-28

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 112.29  E-value: 4.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  18 IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNL--------K 89
Cdd:CHL00025  297 IGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspD 376

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  90 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElvcLSWVNCLIF-FFYFVSTGLTASYSFRLFYYS 168
Cdd:CHL00025  377 KSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILN---DSWLYSPIFaIIAWSTAGLTAFYMFRIYLLT 453

                         170       180
                  ....*....|....*....|....*..
gi 1273810858 169 MSGDNNFYS-NYSFDDSGYFISFGMIG 194
Cdd:CHL00025  454 FEGHLRVHFqNYSGKKNSSFYSISLWG 480
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 14-153 2.46e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 2.46e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  14 FLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHNLKD 90
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810858  91 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVS 153
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 17-136 1.07e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 99.65  E-value: 1.07e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  17 VIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GYPKLAFFHLLTHALFKALLFMCAGSMIHNLK-DSQDI 94
Cdd:MTH00032  294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1273810858  95 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEL 136
Cdd:MTH00032  374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 11-167 5.55e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 96.75  E-value: 5.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  11 FGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL---AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG0651   271 LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERA 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  88 LKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVcLSWVNCLIFFFYFVSTGLTASYSFRLFYY 167
Cdd:COG0651   351 TG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-233 6.20e-21

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 91.13  E-value: 6.20e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00095  216 NFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQ 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  81 AGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTASY 160
Cdd:MTH00095  296 VGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGY 375

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810858 161 SFRLFyysMSGDNNFYSNYSFDDSGYFISFGMIGLLIIAVFggsLLSWIIFPVPFMISLPYYLKFLTIIVVVM 233
Cdd:MTH00095  376 SYRLW---KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVPLFYLF 442
PRK12650 PRK12650
DUF4040 family protein;
1-135 2.15e-20

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 90.10  E-value: 2.15e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPML-DVFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKAL 76
Cdd:PRK12650  260 RFSPVFhDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVVHTLAHALFKSS 339

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810858  77 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12650  340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-254 1.41e-18

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 80.29  E-value: 1.41e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 160 YSFRLFYYSMSGDNNFYSNYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMISLPYYLKFLTIIVVVMGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90
                  ....*....|....*
gi 1273810858 240 LLSKMNISYNLISLS 254
Cdd:pfam06455  81 ELSNLSNKQLKKSLN 95
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-167 1.75e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 84.16  E-value: 1.75e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   7 DVFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGYPKLAFFHLLTHALFKALLFMCAGS 83
Cdd:PRK08375  266 FALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGA 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  84 MIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILELVCLSWVNCLIFFfyFVSTGLTASYSF 162
Cdd:PRK08375  346 IEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVL--LASSLLALLYFL 422


                  ....*
gi 1273810858 163 RLFYY 167
Cdd:PRK08375  423 RIWYR 427
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 15-135 7.48e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 79.58  E-value: 7.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  15 LLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHNlKDS 91
Cdd:PRK12647  262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSElaiKAAVLFLVAHSLYKGALFMVAGIIDHE-TGT 340

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810858  92 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12647  341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 15-166 1.76e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 78.43  E-value: 1.76e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  15 LLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHL---LTHALFKALLFMCAGSMIHNlKDS 91
Cdd:PRK12644  270 VLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS-TGT 348

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810858  92 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELV----CLSWVNCLIFFFYFVSTGLTASYSFRLFY 166
Cdd:PRK12644  349 RDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLRFLW 427
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-163 2.37e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 78.31  E-value: 2.37e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  14 FLLV--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK---LAFFHLLTHALFKALLFMCAGSMIHNl 88
Cdd:PRK12648  271 FWIVggAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLaavAAIFHIINHATFKASLFMAAGIIDHE- 349

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810858  89 KDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILELVCLSWVNCLIFFFYFVSTGLTASYSFR 163
Cdd:PRK12648  350 TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 13-158 2.79e-16

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 77.64  E-value: 2.79e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  13 KFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHNlKDSQ 92
Cdd:PRK07390  285 TVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQ 363

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1273810858  93 DIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILELVCLSWVNCLIFFFYFVST-GLTA 158
Cdd:PRK07390  364 DLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVnALTA 427
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 1-135 2.55e-15

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 74.96  E-value: 2.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPmldVFGFGK--FLLV--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL-------------- 62
Cdd:PRK12645  262 RFTP---IFAGSQvwFWTVtlVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyqgddskiyaaai 338

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810858  63 --AFFHLLTHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12645  339 taAIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFE 412
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-135 3.76e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 74.24  E-value: 3.76e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  15 LLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHNLKdS 91
Cdd:PRK12667  298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQlglAAALFHIINHAIAKSLLFLASGVFIHAAG-T 376

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810858  92 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12667  377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFN 420
PRK12646 PRK12646
DUF4040 family protein;
1-135 4.61e-15

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 74.41  E-value: 4.61e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFGF-GKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG--------------YPKLAF- 64
Cdd:PRK12646  262 RFTPLLGLSNMyIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasiYVFVLFa 341

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810858  65 --FHLLTHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12646  342 alFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-135 1.75e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 72.55  E-value: 1.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  14 FLLV--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIL---SMGYPKLAF----FHLLTHALFKALLFMCAGSM 84
Cdd:PRK12649  278 FILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYgytTYHEPGLGVaaatFHLLNHATFKACLFLVAGIV 357

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1273810858  85 IHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12649  358 AHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-210 1.80e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 72.44  E-value: 1.80e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   2 FSPMLDVFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM-----SILSMGYPKL----------AFFH 66
Cdd:PRK08376  277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglgvGLAALGDPAMasygeialagGIYH 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  67 LLTHALFKALLFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLswVNCLI 146
Cdd:PRK08376  357 IVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810858 147 FFFYFVSTGLTASYSFRLFYYSMSGDNNfYSNYSFDDSGYFISFGMIgLLIIAVFGGSLLSWII 210
Cdd:PRK08376  434 GVIAMIGSVLTLASFVKVFHTAFFGPPS-EKVMNVKEPPKPMLVPML-ILAIAIIGMGLFPWQI 495
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 5-134 4.52e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 71.34  E-value: 4.52e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   5 MLDVFGFG---KFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLF 78
Cdd:PRK08377  263 MQNANGWSsvlKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagvDAGVFHMINHAIVKALLF 342

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810858  79 MCAGSMIHNLKDSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK08377  343 LAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII 397
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 12-140 1.57e-13

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 69.53  E-value: 1.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  12 GKFLLVIGCMTMFMAGLGANFEFDLKKIIALST-------LSQLGLMMSILSMGYPKLA-------FFHLLTHALFKALL 77
Cdd:PRK06521  276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTienigiiFVGLGLAMVFIAYGMPLLAalaltaaLYHLLNHALFKSLL 355

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810858  78 FMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS 140
Cdd:PRK06521  356 FLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-135 2.83e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 68.83  E-value: 2.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   6 LDVFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSilsmgYPKLAFFHLLTHALFKALLFMCAGSmI 85
Cdd:PRK07234  239 LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA-----APLVGGLYALAHGLVKSTLFLCAGA-L 312

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810858  86 HNLKDSQDIRFMGSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07234  313 PSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-166 5.59e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 67.92  E-value: 5.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   8 VFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK---LAFFHLLTHALFKALLFMCAGSm 84
Cdd:PRK06589  276 IFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKalgAAILHLVSHSFAKICLFYSMGS- 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  85 IHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS---WVNCLIFFFYFVSTGLTASYS 161
Cdd:PRK06589  355 IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYL 434


                  ....*
gi 1273810858 162 FRLFY 166
Cdd:PRK06589  435 LKILS 439
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 11-166 6.67e-12

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 65.02  E-value: 6.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  11 FGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK08668  271 FNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAVIYR 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810858  88 LKDSQdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTGLTAsYSFRLFY 166
Cdd:PRK08668  351 TGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFL-YVFRPLA 427
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 11-135 6.93e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 64.75  E-value: 6.93e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  11 FGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-------GYPKLAF-------FHLLTHALFKAL 76
Cdd:PRK08667  269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifgvyGLDTLALlalggalFHSLNHALFKSL 348

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810858  77 LFMCAGSMIHNLKDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK08667  349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
15-134 1.59e-11

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 63.76  E-value: 1.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  15 LLVIGC-MTMFMAGLgANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL---AFFHLLTHALFKALLFMCAGSMIHNLKD 90
Cdd:PRK12668  243 LIYIGAaMAVYGVFF-ALLENDLRRLLSYHIVSQVGYMVAGIGIGTALAingAVAHAFNHILYKGLLFMSAGAVLYRTGT 321

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810858  91 SqDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12668  322 E-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 12-127 3.48e-11

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 62.54  E-value: 3.48e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  12 GKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM-------SILSMGYPKL-------AFFHLLTHALFKALL 77
Cdd:PRK08042  245 GVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILlglgagvTGIALEQPALialglvgGLYHLLNHSLFKSVL 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810858  78 FMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 127
Cdd:PRK08042  325 FLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-241 6.38e-11

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 61.82  E-value: 6.38e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00063  209 RYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFML 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  81 AGSMIHNLKDSQDIR-----FMGSIVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDLILELVCLSWVNCLIFFFYFVSTG 155
Cdd:MTH00063  289 VGDVMSGSGGSQSSNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVF 363

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858 156 LTASYSFRLFyysmsgdNNFYSNYSFDDSGYFISFGMIGLLiiaVFGGSLLSWIIFPVPF-MISLPYYLKFLTIIVVVMG 234
Cdd:MTH00063  364 LSYLYSFRLC-------LILFGVKSSLSSGVRFLFFNSGLM---VFLWLFINYYVFLLLDeVVYLGVFISLVLLLVQLLG 433


                  ....*..
gi 1273810858 235 SYLGYLL 241
Cdd:MTH00063  434 LLVGVLF 440
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-135 2.60e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 59.96  E-value: 2.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  14 FLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL---AFFHLLTHALFKALLFMCAGSMIHnLKD 90
Cdd:PRK07691  277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGmigAIYYLIHDMIVKAALFLLIGIMIK-ITG 355

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1273810858  91 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07691  356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 11-134 2.83e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 59.99  E-value: 2.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  11 FGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGY--PKLAF----FHLLTHALFKALLFMCAGSM 84
Cdd:PRK06525  271 IGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlgSRLALegsiAYIFNHAFAKSLFFLVAGAL 350

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810858  85 IHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06525  351 SYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 11-165 1.29e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.78  E-value: 1.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  11 FGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYPKL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG1008   274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVGVLYDR 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810858  88 LKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIleLVCLSWVNCLIFFFYFVSTGLTASYSFRLF 165
Cdd:COG1008   354 TH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLV--LLGAFQVNPWLAILAALGLILTAAYLLWMY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 11-172 5.57e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.90  E-value: 5.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  11 FGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSMGYPKL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK05846  276 FAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDR 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  88 LKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIleLVCLSWVNCLIFFFYFVSTGLTASYSFRLFYY 167
Cdd:PRK05846  356 LH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLI--LLGSFQVNPVIAFIATTGLILAAVYSLWLYQR 432


                  ....*
gi 1273810858 168 SMSGD 172
Cdd:PRK05846  433 VMFGP 437
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-83 3.94e-07

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 50.47  E-value: 3.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFGFGKFLLVI-GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:PRK08168  251 RFAPLLEQAPPARWLLVLvGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFL 330


                  ....
gi 1273810858  80 CAGS 83
Cdd:PRK08168  331 SASE 334
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 12-134 6.23e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 49.93  E-value: 6.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  12 GKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPkLAFF----HLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK06458  281 GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGP-LGIFaallHMLNHSLTKSAIFFASGNVLQK 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810858  88 lKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06458  360 -YGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 11-165 7.45e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.75  E-value: 7.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  11 FGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAF---FHLLTHALFKALLFMCAGsMIHN 87
Cdd:PRK08676  272 FSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHR 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  88 LKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELVCLS-WVNCLIFFFYFVSTGLTASYSFRLF 165
Cdd:PRK08676  351 QYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLLAASSFAIFLLKAF 430
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-135 8.64e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 49.58  E-value: 8.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  10 GFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK---LAFFHLLTHALFKALLFMCAGsMIH 86
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAglsGAIYYVAHHITVQTTLFLVVG-LIE 349

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1273810858  87 NLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12665  350 RQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
15-134 1.04e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 49.18  E-value: 1.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  15 LLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL---AFFHLLTHALFKALLFMCAGSMIHnLKDS 91
Cdd:PRK12663  275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810858  92 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12663  354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-130 4.62e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.04  E-value: 4.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  11 FGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGYPKLAFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK12662  278 FNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGyiiLAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYH 357

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810858  88 LkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 130
Cdd:PRK12662  358 F-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 13-137 2.17e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 44.81  E-value: 2.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  13 KFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGyPKLAFFHLLTHALFKALLFMcagsMIHNLKdSQ 92
Cdd:MTH00112  152 TLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL----TLNTTS-TK 225

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1273810858  93 DIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELV 137
Cdd:MTH00112  226 TLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILqELT 271
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 1-83 3.96e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 44.26  E-value: 3.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   1 RFSPMLDVFGFGKFLLVIGCMTMFMaGLGANF-EFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLTHALFKALLFM 79
Cdd:PRK08601  255 RFSPLFHDDIAQILLLIFASISVLI-GTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFL 333


                  ....
gi 1273810858  80 CAGS 83
Cdd:PRK08601  334 QSGS 337
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
15-135 4.91e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.87  E-value: 4.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  15 LLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSmIHNLKDS 91
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPlgiVAGIFHAINHVIYKSALFLGAGI-VSYRTKT 347

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810858  92 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK06277  348 SNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-130 1.24e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.80  E-value: 1.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  15 LLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLLTHALFKALLFMCAGSMIHNLKDS 91
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPlgvSAALFYLLAYLFMNLGAFAVILLLSRKGGEA 351

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1273810858  92 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 130
Cdd:COG1007   352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-168 2.51e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 38.94  E-value: 2.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858   5 MLDVFGFGKFLLVIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK-----LAFFHLLTHALFKALLFM 79
Cdd:PRK12664  194 LLLFFSGEEILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSSgvaigILILQIVLSVVYQTLLFM 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810858  80 CAGSMIHNLKdSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWVNCLIF--FFYFVSTGLT 157
Cdd:PRK12664  274 VADSVINRTR-KFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLYkkLFLICSLLLF 351

                         170
                  ....*....|.
gi 1273810858 158 ASYSFRLFYYS 168
Cdd:PRK12664  352 ASVGLKFFWYA 362
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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