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Conserved domains on  [gi|1273810832|gb|ATQ39498|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Betiscoides meridionalis]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-336 3.41e-124

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 367.93  E-value: 3.41e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 161 SFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITISLPYYLKFLTIIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 241 ISSMSIYNNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPGYISCKSFDYGWGEMMGGQGLYGFFIYMIKYMPGWYD 320
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                         330
                  ....*....|....*.
gi 1273810832 321 SNFKIYLVTFIFWMFI 336
Cdd:MTH00165  552 NNLKIYLLSFLLWMII 567
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-336 3.41e-124

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 367.93  E-value: 3.41e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 161 SFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITISLPYYLKFLTIIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 241 ISSMSIYNNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPGYISCKSFDYGWGEMMGGQGLYGFFIYMIKYMPGWYD 320
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                         330
                  ....*....|....*.
gi 1273810832 321 SNFKIYLVTFIFWMFI 336
Cdd:MTH00165  552 NNLKIYLLSFLLWMII 567
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 6.43e-45

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 161.86  E-value: 6.43e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDF-GFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:COG1009   263 RLSPLFALSpVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGSMIHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWMNCLIFFLYFISTGLTA 158
Cdd:COG1009   343 GAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 159 AYSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWI---------IFPVPITISLPYYLKFLTII 229
Cdd:COG1009   422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                         250
                  ....*....|..
gi 1273810832 230 VVILGSYLGYLI 241
Cdd:COG1009   502 LSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 12-241 2.86e-37

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 140.88  E-value: 2.86e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDS 91
Cdd:TIGR01974 277 LYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHE 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAAYSFRLFYYSMSG 171
Cdd:TIGR01974 357 QDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHG 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 172 DNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITI-----------SLPYYLKFLTIIVVILGSYLGYL 240
Cdd:TIGR01974 437 KERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLptsaepalehhHVPALEIWSPTAVAILGILLAYL 516


                  .
gi 1273810832 241 I 241
Cdd:TIGR01974 517 L 517
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-336 5.66e-36

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 128.44  E-value: 5.66e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITISLPYYLKFLTIIVVILGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 240 LISSMSiYNNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPGYISCKSFDYGWGEMMGGQGLYGFFIYMIKYMPGWY 319
Cdd:pfam06455  81 ELSNLS-NKQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|....*..
gi 1273810832 320 DSNFKIYLVTFIFWMFI 336
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLL 176
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-336 3.41e-124

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 367.93  E-value: 3.41e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 161 SFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITISLPYYLKFLTIIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 241 ISSMSIYNNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPGYISCKSFDYGWGEMMGGQGLYGFFIYMIKYMPGWYD 320
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                         330
                  ....*....|....*.
gi 1273810832 321 SNFKIYLVTFIFWMFI 336
Cdd:MTH00165  552 NNLKIYLLSFLLWMII 567
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-336 3.95e-81

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 257.08  E-value: 3.95e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDF-GFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00151  228 RFFPFLSSSsGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFL 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAA 159
Cdd:MTH00151  308 CAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTAL 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITISLPYYLKFLTIIVVIlgsyLGY 239
Cdd:MTH00151  388 YSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVIL----LGL 463

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 240 LISSMSIYNNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPGYISCKSFDYGWGEMMGGQG----LYGFFIYMIKYM 315
Cdd:MTH00151  464 FLSFGFWDSGFSSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGvfkaNKSFSVLNESWP 543

                         330       340
                  ....*....|....*....|.
gi 1273810832 316 PGWYDSNFKIYLVTFIFWMFI 336
Cdd:MTH00151  544 VKWFNFFIGLILLLVLFLVVI 564
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-305 4.62e-80

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 254.30  E-value: 4.62e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFG-FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00207  231 RFYPFLSSTYwFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFV 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAA 159
Cdd:MTH00207  311 CAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAA 390

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITISLPYYLKFLTIIVVILGSYLGY 239
Cdd:MTH00207  391 YSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAW 470

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810832 240 LISSMSIYNNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPGYISCKSFDYGWGEMMGGQGLY 305
Cdd:MTH00207  471 LFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTF 536
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-336 1.54e-78

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 250.33  E-value: 1.54e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFG-FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00209  227 RFFPSLFSSPfFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFI 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAA 159
Cdd:MTH00209  307 CAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAA 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITISLPYYLKFLTIIVVILGSYLGY 239
Cdd:MTH00209  387 YSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY 466

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 240 LISSmsiyNNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPGYISCKSFDYGWGEMMGGQGLYGFFIYMIKYMPGWY 319
Cdd:MTH00209  467 MVLK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQ 542

                         330
                  ....*....|....*..
gi 1273810832 320 DSNFKIYLVTFIFWMFI 336
Cdd:MTH00209  543 NNSLKLFVTFMMLILLG 559
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-336 5.24e-63

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 210.19  E-value: 5.24e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDD-FGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00211  256 RLSPLFQNnQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFM 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAA 159
Cdd:MTH00211  336 CSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAA 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPV-PITISLPYYLKFLTIIVVILGSYLG 238
Cdd:MTH00211  416 YSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEkPEILSLPFLLKLMPLLVTIVGLLLG 495

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 239 YLISsmsiyNNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPG-YISCKSFDYGWGEMMGGQGLYGFFIYMIKYMPG 317
Cdd:MTH00211  496 LELV-----NLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGqTLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTS 570

                         330
                  ....*....|....*....
gi 1273810832 318 WYDSNFKIYLVTFIFWMFI 336
Cdd:MTH00211  571 PQQGLIKSYLALLLLSLLL 589
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-336 2.89e-55

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 190.18  E-value: 2.89e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFG-FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00208  288 RTSPLISNSPwFLSLCLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAA 159
Cdd:MTH00208  368 CSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAV 447

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPiTISLPYYLKFLTIIVVILGSylgy 239
Cdd:MTH00208  448 YSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGA---- 522

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 240 LISSMSIYNNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPG-YISCKSFDYGWGEMMGGQGLYGFFIYMIKYMPGW 318
Cdd:MTH00208  523 AFSFSFLLSLSSNPINSNFFSFLSNQWFFVNISHSIIISFSFFTSlFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLT 602

                         330
                  ....*....|....*...
gi 1273810832 319 YDSNFKIYLVTFIFWMFI 336
Cdd:MTH00208  603 QTGYIKQYLLSSTLLFLL 620
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 16-336 9.15e-55

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 188.45  E-value: 9.15e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  16 LIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 95
Cdd:MTH00004  277 LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIR 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  96 FMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNY 175
Cdd:MTH00004  357 KMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 176 YSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPV-PITISLPYYLKFLTIIVVILGSYLGYLISSMSiyNNLISLD 254
Cdd:MTH00004  437 PPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLALELSNMT--TTLTPPK 514

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 255 LLSLISFVGSMWFMPFLSTKFISYLPLKPGY-ISCKSFDYGWGEMMGGQGLYGFFIYMIKYMPGWYDSNFKIYLVTFIFW 333
Cdd:MTH00004  515 QNTLHNFSNQLAFFNPLTHRLLPMTLLKSSQkIATHLIDLSWLEKMGPKGLANLQLTASKTLTTLQKGLIKNYLTSFALT 594


                  ...
gi 1273810832 334 MFI 336
Cdd:MTH00004  595 ILL 597
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 16-332 3.18e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 170.86  E-value: 3.18e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  16 LIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIR 95
Cdd:MTH00066  275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  96 FMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNY 175
Cdd:MTH00066  355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 176 YSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPV-PITISLPYYLKFLTIIVVILGSYLGYLISSMSIYNNlislD 254
Cdd:MTH00066  435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDLAKITSKTT----P 510

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810832 255 LLSLISFVGSMWFMPFLSTKFISYLPLKPGY-ISCKSFDYGWGEMMGGQGLYGFFIYMIKYMPGWYDSNFKIYLVTFIF 332
Cdd:MTH00066  511 KTKMHSFSNLLAFFPTIIHRLSPKTNLNSGQnIATHLTDMTWYEKSGPKGLTNQQLPPIKTITNIQTGLIKTYLTLFLI 589
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-245 9.30e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 169.65  E-value: 9.30e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFG-SFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00108  262 RFHPLMENNKTIqTLTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFM 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAA 159
Cdd:MTH00108  342 CSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPI-TISLPYYLKFLTIIVVILGSYLG 238
Cdd:MTH00108  422 YSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIpQMTMPLYLKLTALAVTILGFILA 501


                  ....*..
gi 1273810832 239 YLISSMS 245
Cdd:MTH00108  502 LELNLLT 508
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 6.43e-45

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 161.86  E-value: 6.43e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDF-GFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:COG1009   263 RLSPLFALSpVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGSMIHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWMNCLIFFLYFISTGLTA 158
Cdd:COG1009   343 GAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 159 AYSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWI---------IFPVPITISLPYYLKFLTII 229
Cdd:COG1009   422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                         250
                  ....*....|..
gi 1273810832 230 VVILGSYLGYLI 241
Cdd:COG1009   502 LSLLGIALGYLL 513
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 35-169 1.22e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 161.15  E-value: 1.22e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  35 DLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVS 114
Cdd:MTH00137  302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1273810832 115 SLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAAYSFRL-FYYSM 169
Cdd:MTH00137  382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVvFFVSM 437
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-309 3.23e-39

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 146.38  E-value: 3.23e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLL-IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00020  262 RSSPLFEQAPLALIIVtIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFL 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAA 159
Cdd:MTH00020  342 SAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAF 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 160 YSFRLFYYSMSGDNNYYSSYSFDD--SSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITIS--LPYYLKFLTIIVVILGS 235
Cdd:MTH00020  422 YSIRLIYLTFLSNTNLKKAVFFHLheGDWNLLLPLGILALGSIFVGYLAKEMIWSFQITLPpiVPLSIKLLPVFLSLGGI 501

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1273810832 236 YLGYLISSMSIY--NNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPGY-ISCKSFDYGWGEMMGGQGLYGFFI 309
Cdd:MTH00020  502 GLVIILYFYSSKtfRVPFSFIGRNSYTFLGSAWQFNYILNYFLIKKIWKGGHlISYRTIDKGVLELVGPKGISNFLI 578
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 17-309 9.35e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 144.77  E-value: 9.35e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  17 IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQDIRF 96
Cdd:MTH00210  280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRK 359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  97 MGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNYY 176
Cdd:MTH00210  360 MGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSK 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 177 SSYSFDD--SSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITISLPYYLKFLTIIVVILGSYLGYLISSMSIYNNLISLD 254
Cdd:MTH00210  440 KEVFIGVheSSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAFVIYNSMVFLIKISRR 519

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1273810832 255 LLSLIS------FVGSMWFMPFLSTKFISYLPLKPGY-ISCKSFDYGWGEMMGGQGLYGFFI 309
Cdd:MTH00210  520 GVSIRLyhviytFLNSAWQFNYVINHFIVKNIWKFGHlITYRIIDRGLLEIIGPRGISKVLI 581
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 12-241 2.86e-37

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 140.88  E-value: 2.86e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDS 91
Cdd:TIGR01974 277 LYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHE 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAAYSFRLFYYSMSG 171
Cdd:TIGR01974 357 QDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHG 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 172 DNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITI-----------SLPYYLKFLTIIVVILGSYLGYL 240
Cdd:TIGR01974 437 KERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLptsaepalehhHVPALEIWSPTAVAILGILLAYL 516


                  .
gi 1273810832 241 I 241
Cdd:TIGR01974 517 L 517
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 14-165 7.15e-37

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 139.52  E-value: 7.15e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  14 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNLKDSQD 93
Cdd:PRK06590  283 FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 362

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1273810832  94 IRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElVCLSWMNCLIFFLYFISTGLTAAYSFRLF 165
Cdd:PRK06590  363 IRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRLI 433
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-336 5.66e-36

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 128.44  E-value: 5.66e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 160 YSFRLFYYSMSGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITISLPYYLKFLTIIVVILGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 240 LISSMSiYNNLISLDLLSLISFVGSMWFMPFLSTKFISYLPLKPGYISCKSFDYGWGEMMGGQGLYGFFIYMIKYMPGWY 319
Cdd:pfam06455  81 ELSNLS-NKQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|....*..
gi 1273810832 320 DSNFKIYLVTFIFWMFI 336
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLL 176
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-172 1.69e-32

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 127.45  E-value: 1.69e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGF-GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:PRK07376  279 RMYPVFEQFPAvMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFL 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGSMIHNLKD--------SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSwmNCLIFFLYF 151
Cdd:PRK07376  359 GSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGF 436

                         170       180
                  ....*....|....*....|.
gi 1273810832 152 ISTGLTAAYSFRLFYYSMSGD 172
Cdd:PRK07376  437 LTAGMTAFYMFRMYFLTFEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 14-153 1.41e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.33  E-value: 1.41e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  14 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHNLKD 90
Cdd:pfam00361 149 ILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRVH 228

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810832  91 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFIS 153
Cdd:pfam00361 229 TRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 13-165 3.74e-25

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 106.13  E-value: 3.74e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  13 SFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNL---- 88
Cdd:CHL00025  292 NLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepiv 371

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  89 ----KDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElvcLSWMNCLIF-FLYFISTGLTAAYSFR 163
Cdd:CHL00025  372 gyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILN---DSWLYSPIFaIIAWSTAGLTAFYMFR 448


                  ..
gi 1273810832 164 LF 165
Cdd:CHL00025  449 IY 450
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 17-136 3.26e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 100.42  E-value: 3.26e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  17 IIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GYSKLAFFHLLTHALFKALLFMCAGSMIHNLK-DSQDI 94
Cdd:MTH00032  294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1273810832  95 RFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEL 136
Cdd:MTH00032  374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 11-167 6.45e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 98.30  E-value: 6.45e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG0651   271 LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERA 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  88 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLyFISTGLTAAYSFRLFYY 167
Cdd:COG0651   351 TG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL-LLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-166 8.66e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 89.98  E-value: 8.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00095  216 NFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQ 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  81 AGSMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGLTAAY 160
Cdd:MTH00095  296 VGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGY 375


                  ....*.
gi 1273810832 161 SFRLFY 166
Cdd:MTH00095  376 SYRLWK 381
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-167 1.35e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 89.17  E-value: 1.35e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   7 DDFGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGYSKLAFFHLLTHALFKALLFMCAGS 83
Cdd:PRK08375  266 FALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGA 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  84 MIHNLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILELVCLSWMNCLIFFLyfISTGLTAAYSF 162
Cdd:PRK08375  346 IEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFL 422


                  ....*
gi 1273810832 163 RLFYY 167
Cdd:PRK08375  423 RIWYR 427
PRK12650 PRK12650
DUF4040 family protein;
1-164 1.81e-19

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 89.33  E-value: 1.81e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLLII-GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKAL 76
Cdd:PRK12650  260 RFSPVFHDVAVWNWLLIIvGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVVHTLAHALFKSS 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  77 LFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGL 156
Cdd:PRK12650  340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAAL 418

                         170
                  ....*....|..
gi 1273810832 157 TA----AYSFRL 164
Cdd:PRK12650  419 GAvftfAYSARL 430
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 18-163 5.98e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 81.77  E-value: 5.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  18 IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLA----FFHLLTHALFKALLFMCAGSMIHNlKDSQD 93
Cdd:PRK12648  277 AGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAGIIDHE-TGTRD 354

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810832  94 IRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILELVCLSWMNCLIFFLYFISTGLTAAYSFR 163
Cdd:PRK12648  355 MRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-166 7.36e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 81.51  E-value: 7.36e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLLII-GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHL---LTHALFKAL 76
Cdd:PRK12644  255 RLAPGFADVPVWRPTVLVlGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAA 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  77 LFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELV----CLSWMNCLIFFLYFI 152
Cdd:PRK12644  335 LFLVVGIIDHS-TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVL 413

                         170
                  ....*....|....
gi 1273810832 153 STGLTAAYSFRLFY 166
Cdd:PRK12644  414 GSILTVAYSLRFLW 427
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 15-135 5.69e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 78.81  E-value: 5.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHNlKDS 91
Cdd:PRK12647  262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSElaiKAAVLFLVAHSLYKGALFMVAGIIDHE-TGT 340

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810832  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12647  341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-166 8.63e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 78.09  E-value: 8.63e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKL----AFFHLLTHALFKALLFMCAGSMIH 86
Cdd:PRK12667  294 LSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIG-TQLglaaALFHIINHAIAKSLLFLASGVFIH 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  87 NLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLyFISTGLTAAYSFRLFY 166
Cdd:PRK12667  373 AAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAISLVGYFRAWY 450
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 13-166 2.60e-15

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 76.49  E-value: 2.60e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  13 SFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGSMIHNlKDSQ 92
Cdd:PRK07390  285 TVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQ 363

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810832  93 DIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILELVCLSWMNCLIFFLYFISTGLTAAYS----FRLFY 166
Cdd:PRK07390  364 DLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVNALTAFNltrvFRLVF 438
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 1-171 3.45e-15

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 76.50  E-value: 3.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMlddFGFGS----FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL-------------- 62
Cdd:PRK12645  262 RFTPI---FAGSQvwfwTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyqgddskiyaaai 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  63 --AFFHLLTHALFKALLFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE----- 135
Cdd:PRK12645  339 taAIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsmlna 417

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1273810832 136 ----LVCLSWMNCLIFFLYFISTGLTAAYSFRLFYYSMSG 171
Cdd:PRK12645  418 teanLFSLDTWGVLFPVIAWVASVFTFVYSIIFIFKTFFG 457
PRK12646 PRK12646
DUF4040 family protein;
1-135 1.54e-14

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 74.41  E-value: 1.54e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLLI-IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG----------YSKL------- 62
Cdd:PRK12646  262 RFTPLLGLSNMYIYIVTfVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaIASIyvfvlfa 341

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810832  63 AFFHLLTHALFKALLFMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12646  342 ALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 5-164 4.40e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 72.88  E-value: 4.40e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   5 MLDDFGFGSFL---LIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLF 78
Cdd:PRK08377  263 MQNANGWSSVLklvIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagvDAGVFHMINHAIVKALLF 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  79 MCAGSMIHNLKDSQDIRFMGSVVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeLVCLSWMNCLIFFLYFISTGLTA 158
Cdd:PRK08377  343 LAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEA 420


                  ....*.
gi 1273810832 159 AYSFRL 164
Cdd:PRK08377  421 VYYFRL 426
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-166 6.87e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 72.05  E-value: 6.87e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   2 FSPMLDDFGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---------------AFFH 66
Cdd:PRK08376  277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYH 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  67 LLTHALFKALLFMCAGSMIHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLswMNCLI 146
Cdd:PRK08376  357 IVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                         170       180
                  ....*....|....*....|
gi 1273810832 147 FFLYFISTGLTAAYSFRLFY 166
Cdd:PRK08376  434 GVIAMIGSVLTLASFVKVFH 453
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-135 1.52e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 71.40  E-value: 1.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  14 FLLI--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIlsMGYSK---------LAFFHLLTHALFKALLFMCAG 82
Cdd:PRK12649  278 FILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYTTyhepglgvaAATFHLLNHATFKACLFLVAG 355

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1273810832  83 SMIHNLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12649  356 IVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 12-140 1.50e-12

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 68.38  E-value: 1.50e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMsiLSMGYSKL----------------AFFHLLTHALFKA 75
Cdd:PRK06521  276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIF--VGLGLAMVfiaygmpllaalaltaALYHLLNHALFKS 353

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810832  76 LLFMCAGSMIHNLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS 140
Cdd:PRK06521  354 LLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-166 2.92e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 67.15  E-value: 2.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   9 FGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGYSKLAFFHLLTHALFKALLFMCAGSmI 85
Cdd:PRK06589  277 FAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-I 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  86 HNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS---WMNCLIFFLYFISTGLTAAYSF 162
Cdd:PRK06589  356 YSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLL 435


                  ....
gi 1273810832 163 RLFY 166
Cdd:PRK06589  436 KILS 439
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 11-166 3.84e-12

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 66.94  E-value: 3.84e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK08668  271 FNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAVIYR 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810832  88 LKDSQdIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTGlTAAYSFRLFY 166
Cdd:PRK08668  351 TGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIG-SFLYVFRPLA 427
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-135 4.83e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 66.51  E-value: 4.83e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   6 LDDFGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGysklAFFHlLTHALFKALLFMCAGSmI 85
Cdd:PRK07234  239 LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYA-LAHGLVKSTLFLCAGA-L 312

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810832  86 HNLKDSQDIRFMGSVVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07234  313 PSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 8-135 1.01e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 65.91  E-value: 1.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   8 DFGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGL-----------------MMSILSMGYsklAFFHLLTH 70
Cdd:PRK08667  266 ELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIilmgiglyvifgvygldTLALLALGG---ALFHSLNH 342

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810832  71 ALFKALLFMCAGSMIHNLKDsQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK08667  343 ALFKSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
10-134 2.14e-11

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 64.53  E-value: 2.14e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  10 GFGSFLLIIGcMTMFMAGLGANF---EFDLKKIIALSTLSQLGLMMSILSMGySKL----AFFHLLTHALFKALLFMCAG 82
Cdd:PRK12668  236 AFPGTELLIY-IGAAMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIG-TALaingAVAHAFNHILYKGLLFMSAG 313

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1273810832  83 SMIHNLKDSqDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12668  314 AVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 11-134 1.47e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 61.91  E-value: 1.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGY--SKLAF----FHLLTHALFKALLFMCAGSM 84
Cdd:PRK06525  271 IGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlgSRLALegsiAYIFNHAFAKSLFFLVAGAL 350

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810832  85 IHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06525  351 SYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 12-127 1.76e-10

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 61.77  E-value: 1.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLA--------------FFHLLTHALFKALL 77
Cdd:PRK08042  245 GVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVL 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810832  78 FMCAGSMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGF 127
Cdd:PRK08042  325 FLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 11-165 2.61e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.25  E-value: 2.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG1008   274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVGVLYDR 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810832  88 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMncLIFFLYFISTGLTAAYSFRLF 165
Cdd:COG1008   354 TH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNP--WLAILAALGLILTAAYLLWMY 428
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-249 4.64e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 60.66  E-value: 4.64e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00063  209 RYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFML 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  81 AGSMIHNLKDSQDIR-----FMGSVVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLYFISTG 155
Cdd:MTH00063  289 VGDVMSGSGGSQSSNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVF 363

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832 156 LTAAYSFRLFyysmsgdnnYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWIIFPVPITISLPYYLKFLTIIVVILGS 235
Cdd:MTH00063  364 LSYLYSFRLC---------LILFGVKSSLSSGVRFLFFNSGLMVFLWLFINYYVFLLLDEVVYLGVFISLVLLLVQLLGL 434

                         250
                  ....*....|....
gi 1273810832 236 YLGYLISSMSIYNN 249
Cdd:MTH00063  435 LVGVLFYDSNLFSN 448
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-135 1.63e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 58.81  E-value: 1.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  14 FLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHnLKD 90
Cdd:PRK07691  277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITG 355

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1273810832  91 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07691  356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 11-134 1.38e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.90  E-value: 1.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSMGYSKL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK05846  276 FAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDR 355

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810832  88 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK05846  356 LH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 1-83 2.49e-06

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 48.88  E-value: 2.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLLIIGCMTMFMaGLGANF-EFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:PRK08601  255 RFSPLFHDDIAQILLLIFASISVLI-GTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFL 333


                  ....
gi 1273810832  80 CAGS 83
Cdd:PRK08601  334 QSGS 337
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-135 2.96e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 48.81  E-value: 2.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  10 GFGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM----GYSKlAFFHLLTHALFKALLFMCAGsMI 85
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALstvaGLSG-AIYYVAHHITVQTTLFLVVG-LI 348

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810832  86 HNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12665  349 ERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 12-134 3.52e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 3.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  12 GSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLAFF----HLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK06458  281 GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQK 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810832  88 lKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06458  360 -YGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-159 3.95e-06

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 48.16  E-value: 3.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832   1 RFSPMLDDFGFGSFLLII-GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:PRK08168  251 RFAPLLEQAPPARWLLVLvGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFL 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  80 CAGS-----MIHNLKDSQDIRFMGSVVnFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNC--LIFFLYFI 152
Cdd:PRK08168  331 SASEavrdtRLRRLQGPQSAAGVVSLL-LAPLLSAALVLLLQSLLPLGAWPWWWSAVLALAWAPLLWQPCasGASTLSGL 409


                  ....*..
gi 1273810832 153 STGLTAA 159
Cdd:PRK08168  410 GLGLLLV 416
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 11-166 3.95e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.21  E-value: 3.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAF---FHLLTHALFKALLFMCAGsMIHN 87
Cdd:PRK08676  272 FSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHR 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  88 LKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELVCLS-WMNCLIFFLYFIstgltAAYSFRLF 165
Cdd:PRK08676  351 QYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLL-----AASSFAIF 425


                  .
gi 1273810832 166 Y 166
Cdd:PRK08676  426 L 426
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-130 8.00e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.42  E-value: 8.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  11 FGSFLLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-YSKL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK12662  278 FNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVSGSISYH 357

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810832  88 LkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 130
Cdd:PRK12662  358 F-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
15-134 1.26e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.87  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---AFFHLLTHALFKALLFMCAGSMIHnLKDS 91
Cdd:PRK12663  275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810832  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12663  354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-209 2.12e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.80  E-value: 2.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIL----SMGYSkLAFFHLLTHALFKALLFMCAGSMIHNLKD 90
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVS-AALFYLLAYLFMNLGAFAVILLLSRKGGE 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  91 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWMNCLIFFLyFISTGLTAAYSFRLFYYS-M 169
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIA-VLNSVISAYYYLRVVKAMyF 429

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1273810832 170 SGDNNYYSSYSFDDSSYFISFGMIGLLIIAVFGGSLLSWI 209
Cdd:COG1007   430 DEPEEEAPISAPPGLRVALVIAALLVLLLGIFPGPLLDLA 469
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
15-135 7.94e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.17  E-value: 7.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG--YSKLA-FFHLLTHALFKALLFMCAGSmIHNLKDS 91
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGtpLGIVAgIFHAINHVIYKSALFLGAGI-VSYRTKT 347

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810832  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK06277  348 SNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 15-137 1.32e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 40.19  E-value: 1.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810832  15 LLIIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLAFFHLLTHALFKALLFMcagsMIHNLKdSQDI 94
Cdd:MTH00112  154 LLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL----TLNTTS-TKTL 227

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810832  95 RFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELV 137
Cdd:MTH00112  228 KDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILqELT 271
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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